/**
* Creates a new ProgressData object recording a snapshot of our progress at this instant
*
* @param loc our current position. If null, assumes we are done traversing
* @param nTotalRecordsProcessed the total number of records we've processed
* @return
*/
private ProgressMeterData takeProgressSnapshot(
final GenomeLoc loc, final long nTotalRecordsProcessed) {
// null -> end of processing
final long bpProcessed =
loc == null ? targetSizeInBP : regionsBeingProcessed.sizeBeforeLoc(loc);
return new ProgressMeterData(timer.getElapsedTime(), nTotalRecordsProcessed, bpProcessed);
}
private void testSizeBeforeLocX(int pos, int size) {
GenomeLoc test = genomeLocParser.createGenomeLoc(contigOneName, pos, pos);
assertEquals(
mSortedSet.sizeBeforeLoc(test), size, String.format("X pos=%d size=%d", pos, size));
}
