/**
* Convert string, if it is in camelCase, to individual words with each word starting with a
* capital letter
*/
public static String convertCamelCase(String input) {
String[] parts = StringUtils.splitByCharacterTypeCamelCase(input);
String convertedStr = StringUtils.join(parts, " ");
convertedStr = StringUtils.capitalize(convertedStr).trim();
return convertedStr;
}
/**
* Get the number of amino acids in given sequence, excluding the ones only partially present
*
* @param sequence
* @return Number of amino acids
* @throws Exception
*/
public static int getNumFullAminoAcids(String sequence) {
String[] tokens = StringUtils.splitByCharacterTypeCamelCase(sequence);
if (tokens.length < 1) return 0;
int numFullAas = tokens.length;
if (tokens[0].length() < 3) numFullAas--;
if (tokens[tokens.length - 1].length() < 3) numFullAas--;
return numFullAas;
}
/**
* Get the label to display in the webapp for this field. If there is no label, returns the name
* of the field instead.
*
* @return A human readable label.
*/
public String getDisplayName() {
if (label != null) {
return label;
} else {
String[] parts = StringUtils.splitByCharacterTypeCamelCase(fieldName);
String[] ucFirstParts = new String[parts.length];
for (int i = 0; i < parts.length; i++) {
ucFirstParts[i] = StringUtils.capitalize(parts[i]);
}
return StringUtils.join(ucFirstParts, " ");
}
}
private String toUnderscoreSeparated(String camelCase) {
String[] array = StringUtils.splitByCharacterTypeCamelCase(camelCase);
StringBuffer buf = new StringBuffer();
for (int i = 0; i < array.length; i++) {
String s = array[i];
buf.append(s.substring(0, 1).toLowerCase());
buf.append(s.substring(1));
if (i != array.length - 1) {
buf.append("_");
}
}
return buf.toString();
}
/**
* Get the number of amino acids in given sequence, including the ones only partially present
*
* @param sequence
* @return Number of amino acids
* @throws Exception
*/
public static Integer getNumPartAminoAcids(String sequence) {
String[] tokens = StringUtils.splitByCharacterTypeCamelCase(sequence);
return tokens.length;
}