Beispiel #1
0
  /**
   * Convert string, if it is in camelCase, to individual words with each word starting with a
   * capital letter
   */
  public static String convertCamelCase(String input) {
    String[] parts = StringUtils.splitByCharacterTypeCamelCase(input);
    String convertedStr = StringUtils.join(parts, " ");
    convertedStr = StringUtils.capitalize(convertedStr).trim();

    return convertedStr;
  }
  /**
   * Get the number of amino acids in given sequence, excluding the ones only partially present
   *
   * @param sequence
   * @return Number of amino acids
   * @throws Exception
   */
  public static int getNumFullAminoAcids(String sequence) {
    String[] tokens = StringUtils.splitByCharacterTypeCamelCase(sequence);

    if (tokens.length < 1) return 0;

    int numFullAas = tokens.length;
    if (tokens[0].length() < 3) numFullAas--;
    if (tokens[tokens.length - 1].length() < 3) numFullAas--;

    return numFullAas;
  }
 /**
  * Get the label to display in the webapp for this field. If there is no label, returns the name
  * of the field instead.
  *
  * @return A human readable label.
  */
 public String getDisplayName() {
   if (label != null) {
     return label;
   } else {
     String[] parts = StringUtils.splitByCharacterTypeCamelCase(fieldName);
     String[] ucFirstParts = new String[parts.length];
     for (int i = 0; i < parts.length; i++) {
       ucFirstParts[i] = StringUtils.capitalize(parts[i]);
     }
     return StringUtils.join(ucFirstParts, " ");
   }
 }
Beispiel #4
0
 private String toUnderscoreSeparated(String camelCase) {
   String[] array = StringUtils.splitByCharacterTypeCamelCase(camelCase);
   StringBuffer buf = new StringBuffer();
   for (int i = 0; i < array.length; i++) {
     String s = array[i];
     buf.append(s.substring(0, 1).toLowerCase());
     buf.append(s.substring(1));
     if (i != array.length - 1) {
       buf.append("_");
     }
   }
   return buf.toString();
 }
  /**
   * Get the number of amino acids in given sequence, including the ones only partially present
   *
   * @param sequence
   * @return Number of amino acids
   * @throws Exception
   */
  public static Integer getNumPartAminoAcids(String sequence) {
    String[] tokens = StringUtils.splitByCharacterTypeCamelCase(sequence);

    return tokens.length;
  }