private void newComps() {
ta = new JTextArea();
// ta.setLineWrap(true);
ta.setWrapStyleWord(true);
ta.setFocusable(false);
ta.setEditable(false);
ta.setFont(new Font("Courier New", Font.BOLD, 20));
ta.setBackground(Color.black);
ta.setForeground(Color.GREEN);
sc = new JScrollPane();
sc.setViewportView(ta);
btnExport = new JButton("Export");
btnExport.setOpaque(false);
btnExport.setFont(ta.getFont());
btnExport.setFocusable(false);
ckWrap = new JCheckBox("Wrap text");
ckWrap.setOpaque(false);
ckWrap.setForeground(Color.white);
ckWrap.setFont(ta.getFont());
ckWrap.setFocusable(false);
chooser = new JFileChooser();
}
public BarUI(BarCntl theBarCntl) {
this.theBarCntl = theBarCntl;
this.newBar = new Bar();
this.setSize(400, 300);
this.setLocationRelativeTo(null);
this.setResizable(false);
this.setLayout(new BorderLayout());
setDefaultCloseOperation(javax.swing.WindowConstants.EXIT_ON_CLOSE);
topPanel = new JPanel();
centerPanel = new JPanel();
back = new JButton("< Back");
back.setBounds(50, 50, 100, 50);
back.addActionListener(this);
topPanel.add(back);
getBar = new JButton("Get Bar");
getBar.setBounds(50, 50, 100, 50);
getBar.addActionListener(this);
topPanel.add(getBar);
displayBar = new JTextArea("Press 'Get Bar'");
displayBar.setMargin(new Insets(20, 20, 20, 50));
displayBar.setFont(displayBar.getFont().deriveFont(18.0f));
displayBar.setEditable(false);
centerPanel.add(displayBar);
this.add(topPanel, BorderLayout.NORTH);
this.add(centerPanel, BorderLayout.CENTER);
}
/**
* Create a new JumpSourcePanel.
*
* @param tab parent JumpTab
*/
public JumpSourcePanel(final JumpTab tab) {
this.tab = tab;
this.editorPane = new JTextArea();
this.highlighter = new DefaultHighlighter();
highlighter.setDrawsLayeredHighlights(false);
setLayout(new BorderLayout());
setBorder(new TitledBorder("Source"));
editorPane.setFont(JumpGui.FONT_MONOSPACED);
editorPane.setHighlighter(highlighter);
final StringBuilder sb = new StringBuilder();
for (int i = 1; i < MAXIMUM_LINE_NUMBER; ++i) {
sb.append(String.format("%3d %n", i));
}
final JTextArea lineNumbers = new JTextArea(sb.toString());
lineNumbers.setFont(editorPane.getFont());
lineNumbers.setBackground(getBackground());
lineNumbers.setEditable(false);
lineNumbers.setFocusable(false);
final JScrollPane scrollPane =
new JScrollPane(
editorPane,
JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED,
JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
scrollPane.setRowHeaderView(lineNumbers);
add(scrollPane);
SwingUtilities.invokeLater(this);
}
/**
* Get the {@link JComponent} that displays the given message.
*
* @param msg Message to display.
* @param breakLines Whether or not {@literal "long"} lines should be broken up.
* @return {@code JComponent} that displays {@code msg}.
*/
private static JComponent getMessageComponent(String msg, boolean breakLines) {
if (msg.startsWith("<html>")) {
Component[] comps = GuiUtils.getHtmlComponent(msg, null, 500, 400);
return (JScrollPane) comps[1];
}
int msgLength = msg.length();
if (msgLength < 50) {
return new JLabel(msg);
}
StringBuilder sb = new StringBuilder(msgLength * 2);
if (breakLines) {
for (String line : StringUtil.split(msg, "\n")) {
line = StringUtil.breakText(line, "\n", 50);
sb.append(line).append('\n');
}
} else {
sb.append(msg).append('\n');
}
JTextArea textArea = new JTextArea(sb.toString());
textArea.setFont(textArea.getFont().deriveFont(Font.BOLD));
textArea.setBackground(new JPanel().getBackground());
textArea.setEditable(false);
JScrollPane textSp = GuiUtils.makeScrollPane(textArea, 400, 200);
textSp.setPreferredSize(new Dimension(400, 200));
return textSp;
}
@Override
public void setFont(Font font) {
if (font == null) font = txtSample.getFont();
fontList.setSelectedValue(font.getName(), true);
fontList.ensureIndexIsVisible(fontList.getSelectedIndex());
sizeList.setSelectedValue("" + font.getSize(), true);
sizeList.ensureIndexIsVisible(sizeList.getSelectedIndex());
cbBold.setSelected(font.isBold());
cbItalic.setSelected(font.isItalic());
}
public tempDisplay() {
// Window for viewing
JFrame frame = new JFrame("Client Window");
frame.setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE);
frame.addWindowListener(this);
Dimension d = new Dimension(500, 500);
frame.setSize(d);
frame.setPreferredSize(d);
frame.setMinimumSize(d);
frame.setLayout(new BorderLayout());
JPanel panel = new JPanel();
panel.setLayout(new BorderLayout());
// The panel for all the messages
read = new JTextArea();
read.setEditable(false);
read.setLineWrap(true);
read.setWrapStyleWord(true);
Font font = read.getFont();
read.setFont(new Font(font.getName(), font.getStyle(), font.getSize() + 2));
JScrollPane scroll = new JScrollPane(read);
scroll.setSize(read.getSize());
panel.add(scroll, BorderLayout.CENTER);
// The area you write in
write = new JTextField();
write.setEnabled(true);
panel.add(write, BorderLayout.SOUTH);
// What you do when you press enter!
write.addKeyListener(
new KeyListener() {
@Override
public void keyPressed(KeyEvent arg0) {}
@Override
public void keyReleased(KeyEvent arg0) {}
@Override
public void keyTyped(KeyEvent arg0) {
if (arg0.getKeyChar() == KeyEvent.VK_ENTER) {
String text = write.getText();
client.send(text);
write.setText("");
}
}
});
// Add the panel and look at it
frame.add(panel);
// client = new chatClient( this, "localhost", "Clifford" );
if (client.connect()) {
client.start();
frame.setVisible(true);
}
}
private void setMessage(JPanel messageContentPanel, String message, boolean isError) {
JTextArea textArea = new JTextArea(message);
Font editorFont =
textArea.getFont().deriveFont(UIManager.getFont("TextField.font").getSize2D());
textArea.setFont(new Font("Monospaced", editorFont.getStyle(), editorFont.getSize()));
textArea.setEditable(false);
if (isError) {
textArea.setForeground(Color.RED);
}
messageContentPanel.add(new JScrollPane(textArea), BorderLayout.CENTER);
messageContentPanel.revalidate();
messageContentPanel.repaint();
}
public static Dimension getPreferredSize(JTextArea textArea, int preferredWidth) {
Font font = textArea.getFont();
String text = textArea.getText();
Hashtable<Attribute, Object> attributes = new Hashtable<Attribute, Object>();
attributes.put(TextAttribute.FONT, font);
/**
* It is crucial this be accurate! I used to have it always true/true, and XP sometimes failed
* because of it.
*/
Graphics2D g = ((Graphics2D) textArea.getGraphics());
FontRenderContext frc = null;
if (g != null) frc = g.getFontRenderContext();
if (frc == null) {
// on Mac "true, false" seemed to be the right combo.
// try testing with QOptionPaneDemo in French and see the
// external changes dialog
frc = new FontRenderContext(null, true, false);
}
String[] paragraphs = Text.getParagraphs(text);
int rows = 0;
for (int a = 0; a < paragraphs.length; a++) {
int textLength = paragraphs[a].length();
if (Text.isWhiteSpace(paragraphs[a])) {
rows++;
} else {
AttributedString attrString = new AttributedString(paragraphs[a], attributes);
LineBreakMeasurer lbm = new LineBreakMeasurer(attrString.getIterator(), frc);
int pos = 0;
while (pos < textLength) {
pos = lbm.nextOffset(preferredWidth);
lbm.setPosition(pos);
rows++;
}
}
}
int extra = 0;
if (JVM.isWindowsXP) { // allow for descents
extra = (int) (font.getLineMetrics("g", frc).getDescent() + 1);
}
FontMetrics metrics = textArea.getFontMetrics(font);
int rowHeight = metrics.getHeight();
return new Dimension(preferredWidth, rows * rowHeight + extra);
}
/** Constructs the <tt>AuthenticationWindow</tt>. */
private void init() {
this.idValue =
new JTextField(
chatRoom.getParentProvider().getProtocolProvider().getAccountID().getUserID());
this.infoTextArea.setOpaque(false);
this.infoTextArea.setLineWrap(true);
this.infoTextArea.setWrapStyleWord(true);
this.infoTextArea.setFont(infoTextArea.getFont().deriveFont(Font.BOLD));
this.infoTextArea.setEditable(false);
this.infoTextArea.setText(
GuiActivator.getResources()
.getI18NString(
"service.gui.CHAT_ROOM_REQUIRES_PASSWORD",
new String[] {chatRoom.getChatRoomName()}));
this.idLabel.setFont(idLabel.getFont().deriveFont(Font.BOLD));
this.passwdLabel.setFont(passwdLabel.getFont().deriveFont(Font.BOLD));
this.labelsPanel.add(idLabel);
this.labelsPanel.add(passwdLabel);
this.textFieldsPanel.add(idValue);
this.textFieldsPanel.add(passwdField);
this.buttonsPanel.add(loginButton);
this.buttonsPanel.add(cancelButton);
this.mainPanel.add(infoTextArea, BorderLayout.NORTH);
this.mainPanel.add(labelsPanel, BorderLayout.WEST);
this.mainPanel.add(textFieldsPanel, BorderLayout.CENTER);
this.mainPanel.add(buttonsPanel, BorderLayout.SOUTH);
this.backgroundPanel.add(mainPanel, BorderLayout.CENTER);
this.loginButton.setName("ok");
this.cancelButton.setName("cancel");
this.loginButton.setMnemonic(GuiActivator.getResources().getI18nMnemonic("service.gui.OK"));
this.cancelButton.setMnemonic(
GuiActivator.getResources().getI18nMnemonic("service.gui.CANCEL"));
this.loginButton.addActionListener(this);
this.cancelButton.addActionListener(this);
this.getRootPane().setDefaultButton(loginButton);
this.setTransparent(true);
}
private Font getCurrentFont() {
try {
String fontFamily = (String) fontList.getSelectedValue();
int fontSize = Integer.parseInt((String) sizeList.getSelectedValue());
int fontType = Font.PLAIN;
if (cbBold.isSelected()) fontType += Font.BOLD;
if (cbItalic.isSelected()) fontType += Font.ITALIC;
return new Font(fontFamily, fontType, fontSize);
} catch (Exception ex) {
// if error return current sample font.
return txtSample.getFont();
}
}
public int createField(JPanel panel, int x, int y, int width) {
JTextArea l = new JTextArea(this.getLabel());
l.setEditable(false);
l.setLineWrap(true);
l.setBackground(this.getOwner().getBackground());
l.setWrapStyleWord(true);
l.setSize(
new Dimension(
this.getOwner().getWidth(), this.height * (l.getFontMetrics(l.getFont())).getHeight()));
this.setLabelControl(null);
l.setLocation(new Point(0, y));
panel.add(l);
return y + 100;
}
// counts lines
public static int countLines(JTextArea textArea) {
AttributedString text = new AttributedString(textArea.getText());
FontRenderContext frc = textArea.getFontMetrics(textArea.getFont()).getFontRenderContext();
int lines = 0;
if (!textArea.getText().equals("")) {
AttributedCharacterIterator charIt = text.getIterator();
LineBreakMeasurer lineMeasurer = new LineBreakMeasurer(charIt, frc);
float formatWidth = (float) textArea.getSize().width;
lineMeasurer.setPosition(charIt.getBeginIndex());
while (lineMeasurer.getPosition() < charIt.getEndIndex()) {
lineMeasurer.nextLayout(formatWidth);
lines++;
}
for (int i = 0; i < textArea.getText().length(); i++) {
if (textArea.getText().charAt(i) == '\r' || textArea.getText().charAt(i) == '\n') lines++;
}
} else {
lines = 1;
}
return lines;
}
public Font getTextFont() {
return txaRaw.getFont();
}
protected final void showMsg(final String msg, final boolean quit) {
final JPanel p = new JPanel();
p.setLayout(new GridBagLayout());
final GridBagConstraints c = new GridBagConstraints();
c.insets = new Insets(10, 10, 10, 10);
c.gridx = 0;
c.gridy = 0;
c.fill = GridBagConstraints.BOTH;
final JImage im = new JImage(new ImageIcon(this.getClass().getResource("error.png")));
final JLabel l = new JLabel("Une erreur est survenue");
l.setFont(l.getFont().deriveFont(Font.BOLD));
final JLabel lError = new JLabel(msg);
final JTextArea textArea = new JTextArea();
textArea.setFont(textArea.getFont().deriveFont(11f));
c.gridheight = 3;
p.add(im, c);
c.insets = new Insets(2, 4, 2, 4);
c.gridheight = 1;
c.gridx++;
c.weightx = 1;
c.gridwidth = 2;
p.add(l, c);
c.gridy++;
p.add(lError, c);
c.gridy++;
p.add(
new JLabel(
"Il s'agit probablement d'une mauvaise configuration ou installation du logiciel."),
c);
c.gridx = 0;
c.gridwidth = 3;
c.gridy++;
c.weighty = 0;
c.gridwidth = 1;
c.gridx = 1;
c.gridy++;
c.fill = GridBagConstraints.NONE;
c.anchor = GridBagConstraints.EAST;
final Desktop desktop = Desktop.isDesktopSupported() ? Desktop.getDesktop() : null;
final boolean browseSupported = desktop != null && desktop.isSupported(Action.BROWSE);
if (ForumURL != null) {
final javax.swing.Action communityAction;
if (browseSupported) {
communityAction =
new AbstractAction("Consulter le forum") {
@Override
public void actionPerformed(ActionEvent e) {
try {
desktop.browse(new URI(ForumURL));
} catch (Exception e1) {
e1.printStackTrace();
}
}
};
} else {
communityAction =
new AbstractAction("Copier l'adresse du forum") {
@Override
public void actionPerformed(ActionEvent e) {
copyToClipboard(ForumURL);
}
};
}
p.add(new JButton(communityAction), c);
}
c.weightx = 0;
c.gridx++;
final javax.swing.Action supportAction;
if (browseSupported)
supportAction =
new AbstractAction("Contacter l'assistance") {
@Override
public void actionPerformed(ActionEvent e) {
try {
desktop.browse(URI.create(ILM_CONTACT));
} catch (Exception e1) {
e1.printStackTrace();
}
}
};
else
supportAction =
new AbstractAction("Copier l'adresse de l'assistance") {
@Override
public void actionPerformed(ActionEvent e) {
copyToClipboard(ILM_CONTACT);
}
};
p.add(new JButton(supportAction), c);
c.gridy++;
c.gridx = 0;
c.gridwidth = 3;
c.fill = GridBagConstraints.BOTH;
c.insets = new Insets(0, 0, 0, 0);
p.add(new JSeparator(), c);
c.gridx = 0;
c.gridwidth = 3;
c.gridy++;
c.insets = new Insets(2, 4, 2, 4);
p.add(new JLabel("Détails de l'erreur:"), c);
c.insets = new Insets(0, 0, 0, 0);
c.gridy++;
String message = this.getCause() == null ? null : this.getCause().getMessage();
if (message == null) {
message = msg;
} else {
message = msg + "\n\n" + message;
}
message += "\n";
message += getTrace();
textArea.setText(message);
textArea.setEditable(false);
// Scroll
JScrollPane scroll = new JScrollPane(textArea);
scroll.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_ALWAYS);
scroll.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
scroll.getViewport().setMinimumSize(new Dimension(200, 300));
c.weighty = 1;
c.gridwidth = 3;
c.gridx = 0;
c.gridy++;
p.add(scroll, c);
c.gridy++;
c.fill = GridBagConstraints.NONE;
c.weighty = 0;
c.insets = new Insets(2, 4, 2, 4);
final JButton buttonClose = new JButton("Fermer");
p.add(buttonClose, c);
final Window window = this.comp == null ? null : SwingUtilities.getWindowAncestor(this.comp);
final JDialog f;
if (window instanceof Frame) {
f = new JDialog((Frame) window, "Erreur", true);
} else {
f = new JDialog((Dialog) window, "Erreur", true);
}
f.setContentPane(p);
f.pack();
f.setSize(580, 680);
f.setMinimumSize(new Dimension(380, 380));
f.setLocationRelativeTo(this.comp);
final ActionListener al =
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (quit) {
System.exit(1);
} else {
f.dispose();
}
}
};
buttonClose.addActionListener(al);
// cannot set EXIT_ON_CLOSE on JDialog
f.addWindowListener(
new WindowAdapter() {
@Override
public void windowClosing(WindowEvent e) {
al.actionPerformed(null);
}
});
f.setVisible(true);
}
/** Constructs the <tt>LoginWindow</tt>. */
private void init() {
String title;
if (windowTitle != null) title = windowTitle;
else
title =
DesktopUtilActivator.getResources()
.getI18NString("service.gui.AUTHENTICATION_WINDOW_TITLE", new String[] {server});
String text;
if (windowText != null) text = windowText;
else
text =
DesktopUtilActivator.getResources()
.getI18NString("service.gui.AUTHENTICATION_REQUESTED_SERVER", new String[] {server});
String uinText;
if (usernameLabelText != null) uinText = usernameLabelText;
else uinText = DesktopUtilActivator.getResources().getI18NString("service.gui.IDENTIFIER");
String passText;
if (passwordLabelText != null) passText = passwordLabelText;
else passText = DesktopUtilActivator.getResources().getI18NString("service.gui.PASSWORD");
setTitle(title);
infoTextArea.setEditable(false);
infoTextArea.setOpaque(false);
infoTextArea.setLineWrap(true);
infoTextArea.setWrapStyleWord(true);
infoTextArea.setFont(infoTextArea.getFont().deriveFont(Font.BOLD));
infoTextArea.setText(text);
infoTextArea.setAlignmentX(0.5f);
JLabel uinLabel = new JLabel(uinText);
uinLabel.setFont(uinLabel.getFont().deriveFont(Font.BOLD));
JLabel passwdLabel = new JLabel(passText);
passwdLabel.setFont(passwdLabel.getFont().deriveFont(Font.BOLD));
TransparentPanel labelsPanel = new TransparentPanel(new GridLayout(0, 1, 8, 8));
labelsPanel.add(uinLabel);
labelsPanel.add(passwdLabel);
TransparentPanel textFieldsPanel = new TransparentPanel(new GridLayout(0, 1, 8, 8));
textFieldsPanel.add(uinValue);
textFieldsPanel.add(passwdField);
JPanel southFieldsPanel = new TransparentPanel(new GridLayout(1, 2));
this.rememberPassCheckBox.setOpaque(false);
this.rememberPassCheckBox.setBorder(null);
southFieldsPanel.add(rememberPassCheckBox);
if (signupLink != null && signupLink.length() > 0)
southFieldsPanel.add(
createWebSignupLabel(
DesktopUtilActivator.getResources().getI18NString("plugin.simpleaccregwizz.SIGNUP"),
signupLink));
else southFieldsPanel.add(new JLabel());
boolean allowRememberPassword = true;
String allowRemPassStr =
DesktopUtilActivator.getResources().getSettingsString(PNAME_ALLOW_SAVE_PASSWORD);
if (allowRemPassStr != null) {
allowRememberPassword = Boolean.parseBoolean(allowRemPassStr);
}
allowRememberPassword =
DesktopUtilActivator.getConfigurationService()
.getBoolean(PNAME_ALLOW_SAVE_PASSWORD, allowRememberPassword);
setAllowSavePassword(allowRememberPassword);
JPanel buttonPanel = new TransparentPanel(new FlowLayout(FlowLayout.CENTER));
buttonPanel.add(loginButton);
buttonPanel.add(cancelButton);
JPanel southEastPanel = new TransparentPanel(new BorderLayout());
southEastPanel.add(buttonPanel, BorderLayout.EAST);
TransparentPanel mainPanel = new TransparentPanel(new BorderLayout(10, 10));
mainPanel.setBorder(BorderFactory.createEmptyBorder(20, 0, 20, 20));
JPanel mainFieldsPanel = new TransparentPanel(new BorderLayout(0, 10));
mainFieldsPanel.add(labelsPanel, BorderLayout.WEST);
mainFieldsPanel.add(textFieldsPanel, BorderLayout.CENTER);
mainFieldsPanel.add(southFieldsPanel, BorderLayout.SOUTH);
mainPanel.add(infoTextArea, BorderLayout.NORTH);
mainPanel.add(mainFieldsPanel, BorderLayout.CENTER);
mainPanel.add(southEastPanel, BorderLayout.SOUTH);
this.getContentPane().add(mainPanel, BorderLayout.EAST);
this.loginButton.setName("ok");
this.cancelButton.setName("cancel");
if (loginButton.getPreferredSize().width > cancelButton.getPreferredSize().width)
cancelButton.setPreferredSize(loginButton.getPreferredSize());
else loginButton.setPreferredSize(cancelButton.getPreferredSize());
this.loginButton.setMnemonic(
DesktopUtilActivator.getResources().getI18nMnemonic("service.gui.OK"));
this.cancelButton.setMnemonic(
DesktopUtilActivator.getResources().getI18nMnemonic("service.gui.CANCEL"));
this.loginButton.addActionListener(this);
this.cancelButton.addActionListener(this);
this.getRootPane().setDefaultButton(loginButton);
}
/**
* Constructor for main GUI
*
* @param configManager The configuration
* @param title The titlebar title
*/
public SQLRunnerGUI(ConfigurationManager configManager, String title) {
this.configManager = configManager;
mainWindow = new JFrame(title);
// XXX DO NOT USE mainWindow.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
// Because the GUI is intended to be embedded in other applications!!
// They will call SQLRunner.setOkToExit(true) if they want.
mainWindow.addWindowListener(
new WindowAdapter() {
@Override
public void windowClosing(WindowEvent e) {
mainWindow.dispose();
SQLRunner.exit(0);
}
});
final Container controlsArea = new JPanel();
BoxLayout layout = new BoxLayout(controlsArea, BoxLayout.LINE_AXIS);
controlsArea.setLayout(layout);
mainWindow.add(controlsArea, BorderLayout.NORTH);
configurations = configManager.getConfigurations();
connectionsList =
new JComboBox(configurations.toArray(new Configuration[configurations.size()]));
// when you change to a different database you don't want to remember the "force passwd prompt"
// setting
connectionsList.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent e) {
passwdPromptCheckBox.setSelected(false);
}
});
controlsArea.add(new JLabel("Connection"));
controlsArea.add(connectionsList);
passwdPromptCheckBox = new JCheckBox("Ask for passwd");
controlsArea.add(passwdPromptCheckBox);
JButton tb = new JButton("Test");
controlsArea.add(tb);
tb.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent evt) {
// XXX
}
});
final JComboBox inTemplateChoice = new JComboBox();
// XXX Of course these should be editable...
inTemplateChoice.addItem("Input Template:");
for (SQLTemplate t : SQLTemplate.getList()) {
inTemplateChoice.addItem(t);
}
controlsArea.add(inTemplateChoice);
modeList = new JComboBox();
for (OutputMode mode : OutputMode.values()) {
modeList.addItem(mode);
}
// If the mode is set to JTable, switch the
// tab to 1, else reset it to 0 (which is shared
// by Text, SQL, etc...
// XXX should be a third tab for HTML
modeList.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent e) {
mode = (OutputMode) modeList.getSelectedItem();
switch (mode) {
case j:
outputPanel.setSelectedIndex(1);
break;
default:
outputPanel.setSelectedIndex(0);
}
}
});
controlsArea.add(new JLabel("Output Format:"));
controlsArea.add(modeList);
runButton = new JButton(runAction);
controlsArea.add(runButton);
JButton clearOutput = new JButton("Clear Output");
clearOutput.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
textTextArea.setText("");
resultsStatusBar.reset();
}
});
controlsArea.add(clearOutput);
// END OF TOP ROW
// Used by Run...
busyDialog = new JDialog(mainWindow, "Running...");
JProgressBar busyIndicator = new JProgressBar();
busyIndicator.setIndeterminate(true);
busyDialog.add(busyIndicator, BorderLayout.CENTER);
JPanel bottomPanel = new JPanel();
bottomPanel.add(new JButton(cancelAction));
busyDialog.add(bottomPanel, BorderLayout.SOUTH);
busyDialog.pack();
busyDialog.setLocationRelativeTo(mainWindow);
inputTextArea = new JTextArea(6, DISPLAY_COLUMNS);
// Switch to monospaced font
Font msFont = new Font("SansSerif", Font.PLAIN, inputTextArea.getFont().getSize());
inputTextArea.setFont(msFont);
JScrollPane inputAreaScrollPane = new JScrollPane(inputTextArea);
inputAreaScrollPane.setBorder(BorderFactory.createTitledBorder("SQL Command"));
outputPanel = new JTabbedPane();
textTextArea = new JTextArea(20, DISPLAY_COLUMNS);
textTextArea.setFont(msFont);
JScrollPane outputAreaScrollPane = new JScrollPane(textTextArea);
String resultTypeName;
resultTypeName = OutputMode.t.toString();
outputAreaScrollPane.setBorder(BorderFactory.createTitledBorder(resultTypeName));
outputPanel.addTab(resultTypeName, outputAreaScrollPane);
jtable = new JTable();
resultTypeName = OutputMode.j.toString();
outputPanel.addTab(resultTypeName, new JScrollPane(jtable));
inTemplateChoice.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
if (inTemplateChoice.getSelectedIndex() == 0) {
return;
}
final SQLTemplate selectedItem = (SQLTemplate) inTemplateChoice.getSelectedItem();
inputTextArea.setText(selectedItem.getTemplate());
}
});
mainWindow.add(
new JSplitPane(JSplitPane.VERTICAL_SPLIT, inputAreaScrollPane, outputPanel),
BorderLayout.CENTER);
out = new PrintWriter(new TextAreaWriter(textTextArea));
resultsStatusBar = new SuccessFailureBarSwing(mainWindow.getBackground(), 400, 20);
resultsStatusBar.reset();
mainWindow.add((JComponent) resultsStatusBar, BorderLayout.SOUTH);
mainWindow.pack();
UtilGUI.monitorWindowPosition(mainWindow, prefsNode);
mainWindow.setVisible(true);
inputTextArea.requestFocusInWindow();
}
/**
* Method generated by IntelliJ IDEA GUI Designer >>> IMPORTANT!! <<< DO NOT edit this method OR
* call it in your code!
*
* @noinspection ALL
*/
private void $$$setupUI$$$() {
rootPanel = new JPanel();
rootPanel.setLayout(new GridLayoutManager(3, 1, new Insets(0, 0, 0, 0), -1, -1));
final JToolBar toolBar1 = new JToolBar();
rootPanel.add(
toolBar1,
new GridConstraints(
0,
0,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_HORIZONTAL,
GridConstraints.SIZEPOLICY_WANT_GROW,
GridConstraints.SIZEPOLICY_FIXED,
null,
new Dimension(-1, 20),
null,
0,
false));
openSrcButton = new JButton();
openSrcButton.setText("Open Src");
openSrcButton.setToolTipText("Open source file");
toolBar1.add(openSrcButton);
openBinButton = new JButton();
openBinButton.setEnabled(true);
openBinButton.setText("Open Bin");
openBinButton.setToolTipText("Open and disassemble binaries");
toolBar1.add(openBinButton);
saveSrcButton = new JButton();
saveSrcButton.setEnabled(true);
saveSrcButton.setText("Save Src");
saveSrcButton.setToolTipText("Save sources");
toolBar1.add(saveSrcButton);
saveBinButton = new JButton();
saveBinButton.setEnabled(true);
saveBinButton.setText("Save Bin");
saveBinButton.setToolTipText("Save assembled binary");
toolBar1.add(saveBinButton);
final JToolBar.Separator toolBar$Separator1 = new JToolBar.Separator();
toolBar1.add(toolBar$Separator1);
asmButton = new JButton();
asmButton.setText("Asm");
asmButton.setToolTipText("Assemble sources");
toolBar1.add(asmButton);
final JToolBar.Separator toolBar$Separator2 = new JToolBar.Separator();
toolBar1.add(toolBar$Separator2);
hardResetButton = new JButton();
hardResetButton.setEnabled(true);
hardResetButton.setText("Hard Reset");
hardResetButton.setToolTipText("Hard Reset - zeroize memory and reupload binary");
toolBar1.add(hardResetButton);
resetButton = new JButton();
resetButton.setEnabled(true);
resetButton.setText("Reset");
resetButton.setToolTipText("Reset CPU (registers to zero)");
toolBar1.add(resetButton);
execButton = new JButton();
execButton.setEnabled(true);
execButton.setText("Exec");
execButton.setToolTipText("Run forever");
toolBar1.add(execButton);
pauseButton = new JButton();
pauseButton.setEnabled(false);
pauseButton.setText("Pause");
pauseButton.setToolTipText("Pause execution");
toolBar1.add(pauseButton);
runButton = new JButton();
runButton.setEnabled(true);
runButton.setText("Run");
runButton.setToolTipText("Run until breakpoint/reserved");
toolBar1.add(runButton);
stepButton = new JButton();
stepButton.setEnabled(true);
stepButton.setText("Step");
stepButton.setToolTipText("Execute one instruction");
toolBar1.add(stepButton);
final JToolBar.Separator toolBar$Separator3 = new JToolBar.Separator();
toolBar1.add(toolBar$Separator3);
breakpointButton = new JButton();
breakpointButton.setEnabled(true);
breakpointButton.setText("Breakpoint");
breakpointButton.setToolTipText("Toggle breakpoint on instruction address");
toolBar1.add(breakpointButton);
final JPanel panel1 = new JPanel();
panel1.setLayout(new GridLayoutManager(2, 3, new Insets(0, 0, 0, 0), -1, -1));
rootPanel.add(
panel1,
new GridConstraints(
1,
0,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_BOTH,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_CAN_GROW,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_CAN_GROW,
null,
null,
null,
0,
false));
final JLabel label1 = new JLabel();
label1.setText("Source");
panel1.add(
label1,
new GridConstraints(
0,
0,
1,
1,
GridConstraints.ANCHOR_WEST,
GridConstraints.FILL_NONE,
GridConstraints.SIZEPOLICY_FIXED,
GridConstraints.SIZEPOLICY_FIXED,
null,
null,
null,
0,
false));
final JLabel label2 = new JLabel();
label2.setText("Memory");
panel1.add(
label2,
new GridConstraints(
0,
1,
1,
1,
GridConstraints.ANCHOR_WEST,
GridConstraints.FILL_NONE,
GridConstraints.SIZEPOLICY_FIXED,
GridConstraints.SIZEPOLICY_FIXED,
null,
null,
null,
0,
false));
final JLabel label3 = new JLabel();
label3.setText("Registers");
panel1.add(
label3,
new GridConstraints(
0,
2,
1,
1,
GridConstraints.ANCHOR_WEST,
GridConstraints.FILL_NONE,
GridConstraints.SIZEPOLICY_FIXED,
GridConstraints.SIZEPOLICY_FIXED,
null,
null,
null,
0,
false));
memoryScrollPane = new JScrollPane();
panel1.add(
memoryScrollPane,
new GridConstraints(
1,
1,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_BOTH,
GridConstraints.SIZEPOLICY_CAN_GROW,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_WANT_GROW,
null,
new Dimension(600, -1),
null,
0,
false));
memoryTable = new JTable();
memoryScrollPane.setViewportView(memoryTable);
final JScrollPane scrollPane1 = new JScrollPane();
panel1.add(
scrollPane1,
new GridConstraints(
1,
2,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_BOTH,
GridConstraints.SIZEPOLICY_CAN_GROW,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_WANT_GROW,
null,
new Dimension(100, -1),
null,
0,
false));
registersTable = new JTable();
scrollPane1.setViewportView(registersTable);
sourceScrollPane = new JScrollPane();
panel1.add(
sourceScrollPane,
new GridConstraints(
1,
0,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_BOTH,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_WANT_GROW,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_WANT_GROW,
null,
new Dimension(500, 400),
null,
0,
false));
sourceTextarea = new JTextArea();
sourceTextarea.setFont(new Font("Courier New", sourceTextarea.getFont().getStyle(), 12));
sourceTextarea.setText(
"; Input your program here\n set a, 1\n add a, 1\n ife a, 2\n set a, 3\n:mainloop\n ife [message + I], 0\n set pc, end\n set a, [message + I]\n add a, 0xA100\n set [0x8000 + I], a\n add i, 1\n set pc, mainloop\n:message dat \"Hello, world!\", 0\n:end set pc, end");
sourceScrollPane.setViewportView(sourceTextarea);
final JPanel panel2 = new JPanel();
panel2.setLayout(new GridLayoutManager(2, 3, new Insets(0, 0, 0, 0), -1, -1));
panel2.setVisible(false);
rootPanel.add(
panel2,
new GridConstraints(
2,
0,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_BOTH,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_CAN_GROW,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_CAN_GROW,
null,
null,
null,
0,
false));
consoleTextarea = new JTextArea();
consoleTextarea.setEditable(true);
panel2.add(
consoleTextarea,
new GridConstraints(
1,
0,
1,
3,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_BOTH,
GridConstraints.SIZEPOLICY_WANT_GROW,
GridConstraints.SIZEPOLICY_WANT_GROW,
null,
new Dimension(150, 200),
null,
0,
false));
final JLabel label4 = new JLabel();
label4.setText("Console");
panel2.add(
label4,
new GridConstraints(
0,
0,
1,
1,
GridConstraints.ANCHOR_WEST,
GridConstraints.FILL_NONE,
GridConstraints.SIZEPOLICY_FIXED,
GridConstraints.SIZEPOLICY_FIXED,
null,
null,
null,
0,
false));
clearButton = new JButton();
clearButton.setText("Clear");
panel2.add(
clearButton,
new GridConstraints(
0,
1,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_HORIZONTAL,
GridConstraints.SIZEPOLICY_CAN_SHRINK | GridConstraints.SIZEPOLICY_CAN_GROW,
GridConstraints.SIZEPOLICY_FIXED,
null,
null,
null,
0,
false));
final Spacer spacer1 = new Spacer();
panel2.add(
spacer1,
new GridConstraints(
0,
2,
1,
1,
GridConstraints.ANCHOR_CENTER,
GridConstraints.FILL_HORIZONTAL,
GridConstraints.SIZEPOLICY_WANT_GROW,
1,
null,
null,
null,
0,
false));
}
private void updateWindow(GraphElementAbstract element) {
p.removeAll();
// this.element = element;
// this.ab = (GraphElementAbstract) graphInstance
// .getPathwayElement(element);
original = element;
PropertyWindowListener pwl = new PropertyWindowListener(element);
JTextField label = new JTextField(20);
JTextField name = new JTextField(20);
if (ref != null) {
this.ab = ref;
label.setText(ref.getLabel());
name.setText(ref.getName());
} else {
this.ab = original;
label.setText(ab.getLabel());
name.setText(ab.getName());
}
reference = new JCheckBox();
knockedOut = new JCheckBox();
colorButton = new JButton("Colour");
hideNeighbours = new JButton("Hide all Neighbours");
showNeighbours = new JButton("Show all Neighbours");
parametersButton = new JButton("Parameters");
showLabels = new JButton("Show Labels");
colorButton.setBackground(ab.getColor());
colorButton.setToolTipText("Colour");
colorButton.setActionCommand("colour");
colorButton.addActionListener(this);
// System.out.println("label: "+ab.getLabel());
// System.out.println("name: "+ab.getName());
label.setName("label");
name.setName("name");
label.addFocusListener(pwl);
name.addFocusListener(pwl);
reference.setSelected(ab.isReference());
reference.setToolTipText("Set this element to a reference");
reference.setActionCommand("reference");
reference.addActionListener(this);
MigLayout headerlayout = new MigLayout("fillx", "[right]rel[grow,fill]", "");
JPanel headerPanel = new JPanel(headerlayout);
// headerPanel.setBackground(new Color(192, 215, 227));
headerPanel.add(new JLabel(ab.getBiologicalElement()), "");
headerPanel.add(new JSeparator(), "gap 10");
MigLayout layout = new MigLayout("fillx", "[grow,fill]", "");
p.setLayout(layout);
p.add(new JLabel("Element"), "gap 5 ");
p.add(new JLabel(ab.getBiologicalElement()), "wrap,span 3");
p.add(new JLabel("Label"), "gap 5 ");
p.add(label, "wrap,span 3");
p.add(new JLabel("Name"), "gap 5 ");
p.add(name, "wrap ,span 3");
// JCheckBox transitionfire = new JCheckBox("Should transition fire:",
// true);
// JTextField transitionStatement = new JTextField("true");
if (ab.isVertex()) {
BiologicalNodeAbstract bna = (BiologicalNodeAbstract) original;
String lbl = "";
if (bna.hasRef()) {
lbl = bna.getID() + "_" + bna.getRef().getLabel();
}
p.add(new JLabel("Reference:"), "gap 5 ");
p.add(new JLabel(lbl), "wrap ,span 3");
if (bna.hasRef()) {
this.deleteRef = new JButton("Delete Reference");
deleteRef.setToolTipText("Delete Reference");
deleteRef.setActionCommand("deleteRef");
deleteRef.addActionListener(this);
p.add(deleteRef);
this.pickOrigin = new JButton("Highlight Origin");
pickOrigin.setToolTipText("Highlight Origin");
pickOrigin.setActionCommand("pickOrigin");
pickOrigin.addActionListener(this);
p.add(pickOrigin);
} else {
this.chooseRef = new JButton("Choose Reference");
chooseRef.setToolTipText("Choose Reference");
chooseRef.setActionCommand("chooseRef");
chooseRef.addActionListener(this);
p.add(chooseRef);
if (bna.getRefs().size() > 0) {
this.pickRefs = new JButton("Highlight References");
pickRefs.setToolTipText("Highlight References");
pickRefs.setActionCommand("pickRefs");
pickRefs.addActionListener(this);
p.add(pickRefs);
}
}
showLabels.setToolTipText("Show all Labels");
showLabels.setActionCommand("showLabels");
showLabels.addActionListener(this);
p.add(showLabels, "wrap");
JComboBox<String> compartment = new JComboBox<String>();
addCompartmentItems(compartment);
AutoCompleteDecorator.decorate(compartment);
compartment.setSelectedItem(bna.getCompartment());
compartment.addItemListener(this);
p.add(new JLabel("Compartment"), "gap 5 ");
p.add(compartment, "wrap ,span 3");
// ADDing Attributes (for all nodes)
// Show Database IDs
JTextArea dbids = new JTextArea();
String dbidstring = new String();
dbids.setEditable(false);
dbids.setFont(dbids.getFont().deriveFont(Font.BOLD));
dbids.setBackground(Color.WHITE);
p.add(new JLabel("IDs known:"), "gap 5");
p.add(dbids, "wrap, span 3");
// Show Experiment names and values
JTextArea experiments = new JTextArea();
String experimentstring = new String();
experiments.setEditable(false);
experiments.setBackground(Color.WHITE);
p.add(new JLabel("Dataset:"), "gap 5");
p.add(experiments, "wrap, span 3");
// Show GO annotations
JTextArea goannoations = new JTextArea();
String annotationstring = new String();
goannoations.setEditable(false);
goannoations.setForeground(Color.BLUE);
goannoations.setBackground(Color.WHITE);
p.add(new JLabel("Gene Ontology:"), "gap 5");
p.add(goannoations, "wrap, span 3");
// Show graph properties (local property)
JTextArea graphproperties = new JTextArea();
String propertiesstring = new String();
graphproperties.setEditable(false);
graphproperties.setForeground(new Color(255, 55, 55));
graphproperties.setBackground(Color.WHITE);
p.add(new JLabel("Graph properties:"), "gap 5");
p.add(graphproperties, "wrap, span 3");
// JTextField aaSequence = new JTextField(20);
// aaSequence.setText(protein.getAaSequence());
// aaSequence.setName("protein");
// aaSequence.addFocusListener(pwl);
// p.add(new JLabel("AA-Sequence"), "gap 5 ");
// p.add(aaSequence, "wrap, span 3");
String atname, atsvalue;
double atdvalue;
ArrayList<String> experimententries = new ArrayList<>(),
databaseidentries = new ArrayList<>(),
annotationentries = new ArrayList<>(),
graphpropertiesentries = new ArrayList<>();
for (NodeAttribute att : bna.getNodeAttributes()) {
atname = att.getName();
atsvalue = att.getStringvalue();
atdvalue = att.getDoublevalue();
switch (att.getType()) {
case NodeAttributeTypes.EXPERIMENT:
experimententries.add(atname + ":\t" + atdvalue + "\n");
break;
case NodeAttributeTypes.DATABASE_ID:
databaseidentries.add(atname + ":\t" + atsvalue + "\n");
break;
case NodeAttributeTypes.ANNOTATION:
annotationentries.add(atname + ":\t" + atsvalue + "\n");
break;
case NodeAttributeTypes.GRAPH_PROPERTY:
graphpropertiesentries.add(atname + ":\t" + atdvalue + "\n");
break;
default:
break;
}
}
// Sort for more convenient display
Collections.sort(experimententries);
for (String exp : experimententries) experimentstring += exp;
Collections.sort(databaseidentries);
for (String dbid : databaseidentries) dbidstring += dbid;
Collections.sort(annotationentries);
for (String ann : annotationentries) annotationstring += ann;
Collections.sort(graphpropertiesentries);
for (String gprop : graphpropertiesentries) propertiesstring += gprop;
experiments.setText(experimentstring);
dbids.setText(dbidstring);
goannoations.setText(annotationstring);
graphproperties.setText(propertiesstring);
if (ab instanceof PathwayMap) {
p.add(new JLabel("Linked to Pathway"), "gap 5 ");
boolean b = ((PathwayMap) ab).getPathwayLink() == null;
JCheckBox linked = new JCheckBox("", !b);
linked.setToolTipText(
"Shows whether there is a connected Pathway in Memory to this Map (uncheck the Box to delete that Pathway)");
linked.setActionCommand("pathwayLink");
linked.addActionListener(this);
linked.setEnabled(!b);
p.add(linked, "wrap ,span 3");
} else if (ab instanceof Protein) {
Protein protein = (Protein) ab;
JTextField aaSequence = new JTextField(20);
aaSequence.setText(protein.getAaSequence());
aaSequence.setName("protein");
aaSequence.addFocusListener(pwl);
p.add(new JLabel("AA-Sequence"), "gap 5 ");
p.add(aaSequence, "wrap, span 3");
} else if (ab instanceof DNA) {
DNA dna = (DNA) ab;
JTextField ntSequence = new JTextField(20);
ntSequence.setText(dna.getNtSequence());
ntSequence.setName("dna");
ntSequence.addFocusListener(pwl);
p.add(new JLabel("NT-Sequence"), "gap 5 ");
p.add(ntSequence, "wrap, span 3");
} else if (ab instanceof Gene) {
Gene dna = (Gene) ab;
JTextField ntSequence = new JTextField(20);
ntSequence.setText(dna.getNtSequence());
ntSequence.setName("gene");
ntSequence.addFocusListener(pwl);
p.add(new JLabel("NT-Sequence"), "gap 5 ");
p.add(ntSequence, "wrap, span 3");
} else if (ab instanceof RNA) {
RNA rna = (RNA) ab;
JTextField ntSequence = new JTextField(20);
ntSequence.setText(rna.getNtSequence());
ntSequence.setName("rna");
ntSequence.addFocusListener(pwl);
p.add(new JLabel("NT-Sequence"), "gap 5 ");
p.add(ntSequence, "wrap, span 3");
} else if (ab instanceof Place) {
p.add(new JLabel("ID"), "gap 5 ");
JTextField id = new JTextField(20);
id.setText("P" + Integer.toString(ab.getID()));
id.setEditable(false);
p.add(id, "wrap ,span 3");
Place place = (Place) ab;
JLabel lswitchPlace = new JLabel("Place Type");
JComboBox<String> placeList =
new JComboBox<String>(new String[] {"discrete", "continuous"});
if (place.isDiscrete()) placeList.setSelectedItem("discrete");
else placeList.setSelectedItem("continuous");
placeList.setName("placeList");
placeList.addFocusListener(pwl);
p.add(lswitchPlace, "gap 5 ");
p.add(placeList, "wrap");
MyJFormattedTextField token;
MyJFormattedTextField tokenStart;
JLabel lblTokenStart = new JLabel("Token Start");
if (place.isDiscrete()) {
token = new MyJFormattedTextField(MyNumberFormat.getIntegerFormat());
tokenStart = new MyJFormattedTextField(MyNumberFormat.getIntegerFormat());
tokenMin = new MyJFormattedTextField(MyNumberFormat.getIntegerFormat());
tokenMax = new MyJFormattedTextField(MyNumberFormat.getIntegerFormat());
token.setText((int) place.getToken() + "");
tokenStart.setText((int) place.getTokenStart() + "");
tokenMin.setText((int) place.getTokenMin() + "");
tokenMax.setText((int) place.getTokenMax() + "");
} else {
token = new MyJFormattedTextField(MyNumberFormat.getDecimalFormat());
tokenStart = new MyJFormattedTextField(MyNumberFormat.getDecimalFormat());
tokenMin = new MyJFormattedTextField(MyNumberFormat.getDecimalFormat());
tokenMax = new MyJFormattedTextField(MyNumberFormat.getDecimalFormat());
token.setText(place.getToken() + "");
tokenStart.setText(place.getTokenStart() + "");
tokenMin.setText(place.getTokenMin() + "");
tokenMax.setText(place.getTokenMax() + "");
}
JLabel lblToken = new JLabel("Token");
token.setName("token");
// token.addFocusListener(pwl);
token.setEditable(false);
token.setFocusLostBehavior(JFormattedTextField.COMMIT_OR_REVERT);
tokenStart.setName("tokenStart");
tokenStart.setFocusLostBehavior(JFormattedTextField.COMMIT);
tokenStart.addFocusListener(pwl);
tokenMin.setName("tokenMin");
tokenMin.setFocusLostBehavior(JFormattedTextField.COMMIT_OR_REVERT);
tokenMin.addFocusListener(pwl);
JLabel lblTokenMin = new JLabel("min Tokens");
tokenMax.setName("tokenMax");
tokenMax.setFocusLostBehavior(JFormattedTextField.COMMIT_OR_REVERT);
tokenMax.addFocusListener(pwl);
JLabel lblTokenMax = new JLabel("max Tokens");
p.add(lblToken, "gap 5 ");
p.add(token, "wrap");
p.add(lblTokenStart, "gap 5 ");
p.add(tokenStart, "");
constCheck = new JCheckBox("constant");
constCheck.setActionCommand("constCheck");
constCheck.addActionListener(this);
constCheck.setSelected(place.isConstant());
p.add(constCheck, "wrap");
if (constCheck.isSelected()) {
tokenMin.setEnabled(false);
tokenMax.setEnabled(false);
}
p.add(lblTokenMin, "gap 5 ");
p.add(tokenMin, "wrap");
p.add(lblTokenMax, "gap 5");
p.add(tokenMax, "wrap");
} else if (ab instanceof Transition) {
JLabel lswitchTrans = new JLabel("Transition Type");
JComboBox<String> transList =
new JComboBox<String>(
new String[] {
DiscreteTransition.class.getName(),
ContinuousTransition.class.getName(),
StochasticTransition.class.getName()
});
transList.setSelectedItem(ab.getClass().getCanonicalName());
transList.setName("transList");
transList.addFocusListener(pwl);
p.add(lswitchTrans, "gap 5");
p.add(transList, "wrap");
JTextField firingCondition = new JTextField(4);
JLabel lblFiringCondition = new JLabel("Firing Condition");
firingCondition.setText(((Transition) ab).getFiringCondition());
firingCondition.setName("firingCondition");
firingCondition.addFocusListener(pwl);
p.add(lblFiringCondition, "gap 5");
p.add(firingCondition, "wrap");
if (ab instanceof DiscreteTransition) {
DiscreteTransition trans = (DiscreteTransition) ab;
JTextField delay = new JTextField(4);
JLabel lbldelay = new JLabel("Delay");
delay.setText(trans.getDelay() + "");
delay.setName("delay");
delay.addFocusListener(pwl);
p.add(lbldelay, "gap 5");
p.add(delay, "wrap");
} else if (ab instanceof StochasticTransition) {
StochasticTransition trans = (StochasticTransition) ab;
String[] disStrings = {"norm", "exp"};
// Create the combo box, select item at index 4.
// Indices start at 0, so 4 specifies the pig.
JComboBox<String> distributionList = new JComboBox<String>(disStrings);
distributionList.setSelectedItem(trans.getDistribution());
distributionList.setName("disList");
distributionList.addFocusListener(pwl);
p.add(new JLabel("Distribution"), "gap 5");
p.add(distributionList, "wrap");
} else if (ab instanceof ContinuousTransition) {
ContinuousTransition trans = (ContinuousTransition) ab;
JTextField maxSpeed = new JTextField(4);
JLabel lblMaxSpeed = new JLabel("Maximum Speed");
maxSpeed.setText(trans.getMaximumSpeed());
maxSpeed.setName("maximumSpeed");
maxSpeed.addFocusListener(pwl);
p.add(lblMaxSpeed, "gap 5");
p.add(maxSpeed, "wrap");
if (trans.isKnockedOut()) {
maxSpeed.setEnabled(false);
}
}
}
} else if (ab.isEdge()) {
// System.out.println("edge");
if (ab instanceof PNEdge) {
PNEdge e = (PNEdge) ab;
JTextField prob = new JTextField(4);
prob.setText(e.getActivationProbability() + "");
prob.setName("activationProb");
prob.addFocusListener(pwl);
JLabel lblProb = new JLabel("activation Probability");
JTextField function = new JTextField(5);
function.setText(e.getFunction());
function.setName("function");
function.addFocusListener(pwl);
JLabel lblpassingTokens = new JLabel("Edge Function");
JTextField lowBoundary = new JTextField(5);
lowBoundary.setText(e.getLowerBoundary() + "");
lowBoundary.setName("lowBoundary");
lowBoundary.addFocusListener(pwl);
JLabel lblLow = new JLabel("lower Boundary");
JTextField upBoundary = new JTextField(5);
upBoundary.setText(e.getUpperBoundary() + "");
upBoundary.setName("upBoundary");
upBoundary.addFocusListener(pwl);
JLabel lblUp = new JLabel("upper Boundary");
// String[] types = { "discrete", "continuous", "inhibition" };
// Create the combo box, select item at index 4.
// Indices start at 0, so 4 specifies the pig.
// JLabel typeList = new JComboBox(types);
p.add(new JLabel("Edge Type"), "gap 5 ");
p.add(new JLabel(e.getType()), "wrap");
JButton dirChanger = new JButton("Change Direction");
dirChanger.setActionCommand("dirChanger");
dirChanger.addActionListener(this);
p.add(dirChanger, "wrap");
p.add(lblProb, "gap 5");
p.add(prob, "wrap");
p.add(lblpassingTokens, "gap 5");
p.add(function, "wrap");
p.add(lblLow, "gap 5");
p.add(lowBoundary, "wrap");
p.add(lblUp, "gap 5");
p.add(upBoundary, "wrap");
}
}
p.add(new JLabel("Reference"), "gap 5 ");
p.add(reference, "wrap, span 3");
if (ab instanceof Transition) {
knockedOut.setSelected(((Transition) ab).isKnockedOut());
knockedOut.setToolTipText("Knock out");
knockedOut.setActionCommand("knockedOut");
knockedOut.addActionListener(this);
p.add(new JLabel("Knocked out"), "gap 5 ");
p.add(knockedOut, "wrap ,span 3");
}
if (ab.isVertex()) {
hideNeighbours.setToolTipText("Sets all Neighbors of the selected Node to Reference");
hideNeighbours.setActionCommand("hideNeighbours");
hideNeighbours.addActionListener(this);
hideNeighbours.setMaximumSize(new Dimension(120, 30));
showNeighbours.setToolTipText("Delete Reference flag of all Neighbours of the current Node");
showNeighbours.setActionCommand("showNeighbours");
showNeighbours.addActionListener(this);
showNeighbours.setMaximumSize(new Dimension(120, 30));
p.add(showNeighbours);
p.add(hideNeighbours);
}
parametersButton.setToolTipText("Show all Parameters");
parametersButton.setActionCommand("showParameters");
parametersButton.addActionListener(this);
p.add(parametersButton);
p.add(colorButton, "gap 5");
}
public RegisterPane(final Controller controller) {
setLayout(new GridBagLayout());
GridBagConstraints constraints = new GridBagConstraints();
JPanel panel1 = new JPanel();
panel1.setLayout(new GridBagLayout());
panel1.setOpaque(false);
titleLabel = new JLabel("Create a new account");
titleLabel.setForeground(Color.WHITE);
titleLabel.setFont(new Font("Helvatica", Font.BOLD, 14));
constraints.gridx = 0;
constraints.gridy = 0;
constraints.gridwidth = 3;
panel1.add(titleLabel, constraints);
usernameLabel = new JLabel("Username:"******"Email:");
emailLabel.setForeground(Color.WHITE);
constraints.gridx = 0;
constraints.gridy = 2;
constraints.gridwidth = 1;
constraints.insets.top = 0;
constraints.anchor = GridBagConstraints.EAST;
panel1.add(emailLabel, constraints);
emailField = new JTextField(16);
constraints.gridx = 1;
constraints.gridy = 2;
constraints.gridwidth = 3;
constraints.insets.top = 0;
constraints.anchor = GridBagConstraints.EAST;
panel1.add(emailField, constraints);
passwordLabel = new JLabel("Password:"******"Register");
constraints.gridx = 3;
constraints.gridy = 4;
constraints.gridwidth = 1;
constraints.insets.top = 20;
constraints.ipady = 5;
constraints.anchor = GridBagConstraints.EAST;
panel1.add(registerButton, constraints);
registerButton.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (registerButton.isEnabled()) {
statusLabel.setText("");
controller.register(
usernameField.getText(),
emailField.getText(),
new String(passwordField.getPassword()));
registerButton.setEnabled(false);
}
}
});
backButton = new JLabel("<HTML><FONT color=\"#00ffff\"><U>Back</U></FONT></HTML>");
backButton.setOpaque(false);
backButton.setCursor(new Cursor(Cursor.HAND_CURSOR));
constraints.gridx = 3;
constraints.gridy = 5;
constraints.gridwidth = 1;
constraints.insets.top = 20;
constraints.insets.right = 0;
constraints.ipady = 5;
constraints.anchor = GridBagConstraints.EAST;
panel1.add(backButton, constraints);
backButton.addMouseListener(
new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
if (backButton.isEnabled()) {
controller.goBack(RegisterPane.class);
}
}
});
constraints.gridx = 0;
constraints.gridy = 0;
constraints.gridwidth = 1;
constraints.insets.top = 0;
constraints.insets.right = 0;
constraints.ipady = 0;
constraints.anchor = GridBagConstraints.CENTER;
add(panel1, constraints);
JPanel panel2 = new JPanel();
panel2.setLayout(new BorderLayout());
panel2.setOpaque(false);
statusLabel = new JTextArea();
statusLabel.putClientProperty("html.disable", Boolean.TRUE);
statusLabel.setFont(statusLabel.getFont().deriveFont(Font.BOLD));
statusLabel.setBackground(new Color(0, 0, 0, 0));
statusLabel.setForeground(Color.PINK);
statusLabel.setOpaque(false);
statusLabel.setBorder(null);
statusLabel.setEditable(false);
// statusLabel.setHorizontalAlignment(SwingConstants.CENTER);
panel2.add(statusLabel, BorderLayout.CENTER);
constraints.gridx = 0;
constraints.gridy = 1;
constraints.gridwidth = 1;
constraints.insets.top = 20;
constraints.insets.right = 0;
constraints.ipady = 5;
constraints.anchor = GridBagConstraints.WEST;
add(panel2, constraints);
}
/**
* This method is called from within the constructor to initialize the form. WARNING: Do NOT
* modify this code. The content of this method is always regenerated by the Form Editor.
*/
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
java.awt.GridBagConstraints gridBagConstraints;
buttonGroup1 = new javax.swing.ButtonGroup();
buttonGroup2 = new javax.swing.ButtonGroup();
buttonGroup3 = new javax.swing.ButtonGroup();
xmlPanel = new javax.swing.JPanel();
javax.swing.JPanel xmlFilePanel = new javax.swing.JPanel();
javax.swing.JPanel trainXmlFilePanel = new javax.swing.JPanel();
trainXmlFileTextField = new javax.swing.JTextField();
javax.swing.JButton trainXmlFileButton = new javax.swing.JButton();
javax.swing.JPanel targetPanel = new javax.swing.JPanel();
javax.swing.JPanel targetFilePanel = new javax.swing.JPanel();
targetFileTextField = new javax.swing.JTextField();
javax.swing.JButton targetFileButton = new javax.swing.JButton();
javax.swing.JPanel ptmPanel = new javax.swing.JPanel();
ptmComboBox = new javax.swing.JComboBox();
javax.swing.JPanel aatypePanel1 = new javax.swing.JPanel();
javax.swing.JPanel aatypeComboPanel = new javax.swing.JPanel();
javax.swing.JScrollPane noteTypeScrollPane = new javax.swing.JScrollPane();
javax.swing.JTextArea noteTypeTextArea = new javax.swing.JTextArea();
typePanel = new javax.swing.JPanel();
crossValidationRadioButton = new javax.swing.JRadioButton();
looRadioButton = new javax.swing.JRadioButton();
selfTrainingRadioButton = new javax.swing.JRadioButton();
kfoldPanel = new javax.swing.JPanel();
javax.swing.JLabel kfoldLabel = new javax.swing.JLabel();
kfoldTextField = new javax.swing.JTextField();
javax.swing.JLabel repeatLabel = new javax.swing.JLabel();
repeatTextField = new javax.swing.JTextField();
javax.swing.JLabel repeatTimesLabel = new javax.swing.JLabel();
negSizePanel = new javax.swing.JPanel();
sameSizeNegRadioButton = new javax.swing.JRadioButton();
samePercentageRadioButton = new javax.swing.JRadioButton();
negDataPanel = new javax.swing.JPanel();
javax.swing.JPanel negFromOtherFilePanel = new javax.swing.JPanel();
negFromTrainFileRadioButton = new javax.swing.JRadioButton();
negFromValidFileRadioButton = new javax.swing.JRadioButton();
negFileTextField = new javax.swing.JTextField();
negFileButton = new javax.swing.JButton();
javax.swing.JPanel negValidSizePanel = new javax.swing.JPanel();
negValidSizeTextField = new javax.swing.JTextField();
javax.swing.JLabel numValidSizeNoteLabel = new javax.swing.JLabel();
javax.swing.JPanel optionPanel = new javax.swing.JPanel();
javax.swing.JButton optionBtn = new javax.swing.JButton();
javax.swing.JPanel OKPanel = new javax.swing.JPanel();
OKBtn = new javax.swing.JButton();
javax.swing.JButton cancelBtn = new javax.swing.JButton();
setDefaultCloseOperation(javax.swing.WindowConstants.DISPOSE_ON_CLOSE);
setTitle("PHOSIDE train");
getContentPane().setLayout(new java.awt.GridBagLayout());
xmlPanel.setLayout(new java.awt.GridBagLayout());
xmlFilePanel.setBorder(
javax.swing.BorderFactory.createTitledBorder("Training file in XML format"));
xmlFilePanel.setMinimumSize(new java.awt.Dimension(400, 63));
xmlFilePanel.setPreferredSize(new java.awt.Dimension(500, 63));
xmlFilePanel.setLayout(new java.awt.GridBagLayout());
trainXmlFilePanel.setLayout(new java.awt.GridBagLayout());
trainXmlFileTextField.setToolTipText("Please select a FASTA training file");
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 1;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
trainXmlFilePanel.add(trainXmlFileTextField, gridBagConstraints);
trainXmlFileButton.setText("Open");
trainXmlFileButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
trainXmlFileButtonActionPerformed(evt);
}
});
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 2;
gridBagConstraints.gridy = 0;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_END;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
trainXmlFilePanel.add(trainXmlFileButton, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.weightx = 1.0;
xmlFilePanel.add(trainXmlFilePanel, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
xmlPanel.add(xmlFilePanel, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
getContentPane().add(xmlPanel, gridBagConstraints);
targetPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Save to "));
targetPanel.setMinimumSize(new java.awt.Dimension(400, 63));
targetPanel.setPreferredSize(new java.awt.Dimension(500, 63));
targetPanel.setLayout(new java.awt.GridBagLayout());
targetFilePanel.setLayout(new java.awt.GridBagLayout());
targetFileTextField.setToolTipText("Please select a FASTA training file");
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 1;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
targetFilePanel.add(targetFileTextField, gridBagConstraints);
targetFileButton.setText("Open");
targetFileButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
targetFileButtonActionPerformed(evt);
}
});
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 2;
gridBagConstraints.gridy = 0;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_END;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
targetFilePanel.add(targetFileButton, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.weightx = 1.0;
targetPanel.add(targetFilePanel, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(targetPanel, gridBagConstraints);
// ptmPanel.setVisible(false); // TODO: remove this line for other ptm
ptmPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("PTM type"));
ptmPanel.setLayout(new java.awt.GridBagLayout());
ptmComboBox.setModel(new javax.swing.DefaultComboBoxModel(PTM.values()));
ptmComboBox.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
ptmComboBoxActionPerformed(evt);
}
});
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
ptmPanel.add(ptmComboBox, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(ptmPanel, gridBagConstraints);
aatypePanel1.setBorder(javax.swing.BorderFactory.createTitledBorder("Residue types"));
aatypePanel1.setLayout(new java.awt.GridBagLayout());
aatypeComboPanel.setLayout(
new javax.swing.BoxLayout(aatypeComboPanel, javax.swing.BoxLayout.LINE_AXIS));
typesCombo = new CheckComboBox(((PTM) ptmComboBox.getSelectedItem()).getAminoAcids());
aatypeComboPanel.add(typesCombo);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
aatypePanel1.add(aatypeComboPanel, gridBagConstraints);
noteTypeScrollPane.setBorder(null);
noteTypeScrollPane.setVerticalScrollBarPolicy(
javax.swing.ScrollPaneConstants.VERTICAL_SCROLLBAR_NEVER);
noteTypeTextArea.setColumns(20);
noteTypeTextArea.setEditable(false);
noteTypeTextArea.setFont(
noteTypeTextArea.getFont().deriveFont(noteTypeTextArea.getFont().getSize() - 2f));
noteTypeTextArea.setLineWrap(true);
noteTypeTextArea.setRows(5);
noteTypeTextArea.setText(
"Hint: selected amino acids will be trained together. For example, for phosphorylation, it is advisable to train serine and threonine together, but it may not be a good practice to train serine, threonine, and tyrosine together.");
noteTypeTextArea.setWrapStyleWord(true);
noteTypeTextArea.setOpaque(false);
noteTypeScrollPane.setViewportView(noteTypeTextArea);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.BOTH;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.weighty = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
aatypePanel1.add(noteTypeScrollPane, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(aatypePanel1, gridBagConstraints);
// typePanel.setVisible(false);
typePanel.setLayout(new java.awt.FlowLayout(java.awt.FlowLayout.LEFT));
buttonGroup1.add(crossValidationRadioButton);
crossValidationRadioButton.setSelected(true);
crossValidationRadioButton.setText("K Cross Validation");
crossValidationRadioButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
crossValidationRadioButtonActionPerformed(evt);
}
});
typePanel.add(crossValidationRadioButton);
buttonGroup1.add(looRadioButton);
looRadioButton.setText("Leave-one-out Validation");
looRadioButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
looRadioButtonActionPerformed(evt);
}
});
typePanel.add(looRadioButton);
buttonGroup1.add(selfTrainingRadioButton);
selfTrainingRadioButton.setText("Self Training");
selfTrainingRadioButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
selfTrainingRadioButtonActionPerformed(evt);
}
});
typePanel.add(selfTrainingRadioButton);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
getContentPane().add(typePanel, gridBagConstraints);
kfoldPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Kfold cross validation"));
kfoldPanel.setLayout(new java.awt.FlowLayout(java.awt.FlowLayout.LEFT));
kfoldLabel.setText("K: ");
kfoldPanel.add(kfoldLabel);
kfoldTextField.setText("10");
kfoldTextField.setMinimumSize(new java.awt.Dimension(50, 19));
kfoldTextField.setPreferredSize(new java.awt.Dimension(50, 19));
kfoldPanel.add(kfoldTextField);
repeatLabel.setText("Repeat for ");
kfoldPanel.add(repeatLabel);
repeatTextField.setText("1");
repeatTextField.setPreferredSize(new java.awt.Dimension(40, 19));
kfoldPanel.add(repeatTextField);
repeatTimesLabel.setText("times");
kfoldPanel.add(repeatTimesLabel);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(kfoldPanel, gridBagConstraints);
negSizePanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Negative test data size"));
negSizePanel.setLayout(new java.awt.FlowLayout(java.awt.FlowLayout.LEFT));
buttonGroup2.add(sameSizeNegRadioButton);
sameSizeNegRadioButton.setSelected(true);
sameSizeNegRadioButton.setText("Same size as positive test data");
negSizePanel.add(sameSizeNegRadioButton);
buttonGroup2.add(samePercentageRadioButton);
samePercentageRadioButton.setText("Same percentage as positive test data");
negSizePanel.add(samePercentageRadioButton);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(negSizePanel, gridBagConstraints);
negDataPanel.setVisible(false);
negDataPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Negative data"));
negDataPanel.setLayout(new java.awt.GridBagLayout());
negFromOtherFilePanel.setBorder(
javax.swing.BorderFactory.createTitledBorder("Select negative validation data from"));
negFromOtherFilePanel.setLayout(new java.awt.GridBagLayout());
buttonGroup3.add(negFromTrainFileRadioButton);
negFromTrainFileRadioButton.setSelected(true);
negFromTrainFileRadioButton.setText("Training file");
negFromTrainFileRadioButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
negFromTrainFileRadioButtonActionPerformed(evt);
}
});
negFromOtherFilePanel.add(negFromTrainFileRadioButton, new java.awt.GridBagConstraints());
buttonGroup3.add(negFromValidFileRadioButton);
negFromValidFileRadioButton.setText("A validation file");
negFromValidFileRadioButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
negFromValidFileRadioButtonActionPerformed(evt);
}
});
negFromOtherFilePanel.add(negFromValidFileRadioButton, new java.awt.GridBagConstraints());
negFileTextField.setVisible(false);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
negFromOtherFilePanel.add(negFileTextField, gridBagConstraints);
negFileButton.setVisible(false);
negFileButton.setText("Open");
negFileButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
negFileButtonActionPerformed(evt);
}
});
negFromOtherFilePanel.add(negFileButton, new java.awt.GridBagConstraints());
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
negDataPanel.add(negFromOtherFilePanel, gridBagConstraints);
negValidSizePanel.setBorder(
javax.swing.BorderFactory.createTitledBorder("No. of negarive validation sites"));
negValidSizePanel.setLayout(new java.awt.FlowLayout(java.awt.FlowLayout.LEFT));
negValidSizeTextField.setText("1000");
negValidSizeTextField.setPreferredSize(new java.awt.Dimension(60, 19));
negValidSizePanel.add(negValidSizeTextField);
numValidSizeNoteLabel.setText("Put -1 to use all");
negValidSizePanel.add(numValidSizeNoteLabel);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
negDataPanel.add(negValidSizePanel, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(negDataPanel, gridBagConstraints);
optionBtn.setText("Advanced options");
optionBtn.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
optionBtnActionPerformed(evt);
}
});
optionPanel.add(optionBtn);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 10;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_START;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(optionPanel, gridBagConstraints);
OKBtn.setText(" OK ");
OKBtn.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
OKBtnActionPerformed(evt);
}
});
OKPanel.add(OKBtn);
cancelBtn.setText("Cancel");
cancelBtn.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
cancelBtnActionPerformed(evt);
}
});
OKPanel.add(cancelBtn);
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 10;
gridBagConstraints.anchor = java.awt.GridBagConstraints.LINE_END;
gridBagConstraints.insets = new java.awt.Insets(5, 5, 5, 5);
getContentPane().add(OKPanel, gridBagConstraints);
pack();
} // </editor-fold>//GEN-END:initComponents
public ErrorMessageDialog(
Frame owner, String title, String friendlyMessage, String moreInfo, Throwable t) {
super(owner, (title == null || title.length() == 0 ? "Error" : title), true);
getContentPane().setLayout(new BorderLayout());
if ((moreInfo == null || moreInfo.length() == 0) && t != null) {
moreInfo = t.getMessage();
}
if (friendlyMessage == null || friendlyMessage.length() == 0) {
friendlyMessage = moreInfo;
moreInfo = null;
}
friendLabel = new JLabel(friendlyMessage == null ? "Unknown error" : friendlyMessage);
friendPanel = new JPanel(new BorderLayout());
friendPanel.add(friendLabel, BorderLayout.CENTER);
getContentPane().add(friendPanel, BorderLayout.NORTH);
okButton = new JButton("OK");
okButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
THIS.setVisible(false);
}
});
JPanel okPanel = new JPanel(new FlowLayout());
okPanel.add(okButton);
getContentPane().add(okPanel, BorderLayout.SOUTH);
if (moreInfo != null) {
moreButton = new JButton("More info");
moreButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
showMore = !showMore;
moreButton.setText(showMore ? "Less info" : "More info");
arrange();
}
});
friendPanel.add(moreButton, BorderLayout.EAST);
// Make html out of long texts to enable line breaking
if (moreInfo.length() > 80 && !moreInfo.startsWith("<html>")) {
StringBuffer sb = new StringBuffer(moreInfo.length() + 40);
sb.append("<html><p>");
for (int i = 0; i < moreInfo.length(); i++) {
char c = moreInfo.charAt(i);
if (c == '&') {
sb.append("&");
} else if (c == '<') {
sb.append("<");
} else if (c == '>') {
sb.append(">");
} else if (c == '\n') {
sb.append("<br/>");
} else {
sb.append(c);
}
}
sb.append("</p></html>");
moreInfo = sb.toString();
}
moreLabel = new JLabel(moreInfo);
morePanel = new JPanel(new BorderLayout());
morePanel.add(moreLabel, BorderLayout.CENTER);
extraPanel = new JPanel(new BorderLayout());
extraPanel.add(morePanel, BorderLayout.NORTH);
}
if (t != null) {
advancedButton = new JButton("Advanced");
advancedButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
showAdvanced = !showAdvanced;
if (morePanel == null) showMore = showAdvanced;
advancedButton.setText(showAdvanced ? "Simple" : "Advanced");
arrange();
}
});
if (morePanel == null) {
friendPanel.add(advancedButton, BorderLayout.EAST);
} else {
final Box box = Box.createVerticalBox();
box.add(advancedButton);
box.add(Box.createVerticalGlue());
morePanel.add(box, BorderLayout.EAST);
}
final StringBuffer buf = new StringBuffer(200);
Throwable cause = t;
while (null != cause) {
if (buf.length() > 0) {
buf.append("\nCaused by ");
}
buf.append(cause.toString());
final StackTraceElement[] elements = cause.getStackTrace();
for (int i = 0; i < elements.length; i++) {
buf.append("\n at ").append(elements[i].toString());
}
cause = cause.getCause();
}
JTextArea advancedTextArea = new JTextArea(buf.toString());
final Font oldFont = advancedTextArea.getFont();
final Font newFont = new Font(oldFont.getName(), oldFont.getStyle(), 10);
advancedTextArea.setFont(newFont);
advancedLabel = new JScrollPane(advancedTextArea);
}
arrange();
setLocationRelativeTo(getOwner());
String friendliness =
Util.getProperty("org.knopflerfish.desktop.errordialogfriendliness", null);
if (friendliness != null) {
if ("more".equals(friendliness)) {
moreButton.doClick();
} else if ("advanced".equals(friendliness)) {
moreButton.doClick();
advancedButton.doClick();
}
}
}
/** create the form */
private void createForm() {
// create the panel
setName(getMyType() + " editor");
// create the information message
String msg =
"1. Use the buttons to the right to add/remove and re-order the points in the "
+ getMyType()
+ ".\r\n";
msg +=
" 2. Use the Drag button to switch on and off dragging of " + getMyType() + " points.\r\n";
msg += " 3. Select a point from the list below to edit it in Point Editor (below).\r\n";
msg += " 4. Use Reset to return to the original " + getMyType() + ".\r\n";
msg += " 5. Finally use Apply then Close to update the shape.\r\n";
// create the information panel
final JTextArea info = new JTextArea();
info.setBackground(this.getBackground());
info.setLineWrap(true);
info.setWrapStyleWord(true);
info.setText(msg);
// make the text a little smaller
final Font infoFont = info.getFont();
info.setFont(infoFont.deriveFont((float) 10.0));
// create the top panel (with the new, up, down button)
final JPanel infoPanel = new JPanel();
infoPanel.setLayout(new BorderLayout());
final JPanel btnBar = new JPanel();
btnBar.setLayout(new GridLayout(2, 0));
infoPanel.add("East", btnBar);
infoPanel.add("Center", info);
// and the new, up, down buttons
final JButton upBtn = createButton("Move current point up", "images/Up.gif", "Up");
upBtn.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
doUpDown(true);
}
});
final JButton downBtn = createButton("Move current point down", "images/Down.gif", "Down");
downBtn.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
doUpDown(false);
}
});
final JButton newBtn = createButton("Add new point", "images/NewPin.gif", "New");
newBtn.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
addNew();
}
});
final JButton deleteBtn =
createButton("Delete current point", "images/DeletePin.gif", "Delete");
deleteBtn.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
deleteCurrent();
}
});
btnBar.add(upBtn);
btnBar.add(downBtn);
btnBar.add(newBtn);
btnBar.add(deleteBtn);
// create the list
_myList = new JList();
_myList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
_myList.setBorder(new javax.swing.border.EtchedBorder());
_myList.addListSelectionListener(
new ListSelectionListener() {
public void valueChanged(final ListSelectionEvent e) {
if (!e.getValueIsAdjusting()) {
if (!_myList.isSelectionEmpty()) {
final WorldLocation loc = (WorldLocation) _myList.getSelectedValue();
if (loc != null) editThis(_myList.getSelectedValue());
}
}
}
});
// show the list
final JPanel listHolder = new JPanel();
listHolder.setLayout(new BorderLayout());
_dragger = new DragButton(getChart(), _theParent);
listHolder.add("North", _dragger);
listHolder.add("Center", _myList);
// create the sub-form
_subPanel = new JPanel();
_subPanel.setBorder(javax.swing.BorderFactory.createTitledBorder("Point Editor"));
_subPanel.setName("Point editor");
_subPanel.setLayout(new BorderLayout());
_subPanel.add("Center", _editor.getCustomEditor());
final JButton subApply = new JButton("Apply");
subApply.setToolTipText("Apply the changes to our " + getMyType());
subApply.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
final WorldLocation curLoc = (WorldLocation) _myList.getSelectedValue();
if (curLoc != null) {
curLoc.copy((WorldLocation) _editor.getValue());
_myList.repaint();
// also update the point in the path
final int index = _myList.getSelectedIndex();
getPath().getLocationAt(index).copy(curLoc);
// update the plot
getChart().getLayers().fireReformatted(null);
}
}
});
// create the bottom toolbar
final JButton closeBtn = new JButton("Close");
closeBtn.setToolTipText("Close this panel");
closeBtn.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
doClose();
}
});
// now the reset button
final JButton resetBtn = new JButton("Reset");
resetBtn.setToolTipText("Reset the data");
resetBtn.addActionListener(
new ActionListener() {
public void actionPerformed(final ActionEvent e) {
doReset();
}
});
final JPanel buttonHolder = new JPanel();
buttonHolder.setLayout(new GridLayout(1, 0));
buttonHolder.add(closeBtn);
buttonHolder.add(subApply);
buttonHolder.add(resetBtn);
final JPanel bottomHolder = new JPanel();
bottomHolder.setLayout(new BorderLayout());
bottomHolder.add("Center", _subPanel);
bottomHolder.add("South", buttonHolder);
// put them into the form
setLayout(new BorderLayout());
add("North", infoPanel);
add("Center", listHolder);
add("South", bottomHolder);
}
private static int getTextAreaBaseline(JTextArea text, int height) {
Insets insets = text.getInsets();
FontMetrics fm = text.getFontMetrics(text.getFont());
return insets.top + fm.getAscent();
}
/**
* Shows a dialog request to enter text in a multiline text field <br>
* Though not all text might be visible, everything entered is delivered with the returned text
* <br>
* The main purpose for this feature is to allow pasting text from somewhere preserving line
* breaks <br>
*
* @param msg the message to display.
* @param title the title for the dialog (default: Sikuli input request)
* @param lines the maximum number of lines visible in the text field (default 9)
* @param width the maximum number of characters visible in one line (default 20)
* @return The user's input including the line breaks.
*/
public static String inputText(String msg, String title, int lines, int width) {
width = Math.max(20, width);
lines = Math.max(9, lines);
if ("".equals(title)) {
title = "Sikuli input request";
}
JTextArea ta = new JTextArea("");
int w = width * ta.getFontMetrics(ta.getFont()).charWidth('m');
int h = (int) (lines * ta.getFontMetrics(ta.getFont()).getHeight());
ta.setPreferredSize(new Dimension(w, h));
ta.setMaximumSize(new Dimension(w, 2 * h));
JScrollPane sp = new JScrollPane(ta);
sp.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
JTextArea tm = new JTextArea(msg);
tm.setColumns(width);
tm.setLineWrap(true);
tm.setWrapStyleWord(true);
tm.setEditable(false);
tm.setBackground(new JLabel().getBackground());
JPanel pnl = new JPanel();
pnl.setLayout(new BoxLayout(pnl, BoxLayout.Y_AXIS));
pnl.add(sp);
pnl.add(Box.createVerticalStrut(10));
pnl.add(tm);
pnl.add(Box.createVerticalStrut(10));
if (0 == JOptionPane.showConfirmDialog(null, pnl, title, JOptionPane.OK_CANCEL_OPTION)) {
return ta.getText();
} else {
return "";
}
}