Example #1
0
 /**
  * Genotype-specific functions -- how many hom ref calls are there in the genotypes?
  *
  * @return number of hom ref calls
  */
 public int getHomRefCount() {
   calculateGenotypeCounts();
   return genotypeCounts[Genotype.Type.HOM_REF.ordinal()];
 }
Example #2
0
 /**
  * Genotype-specific functions -- how many het calls are there in the genotypes?
  *
  * @return number of het calls
  */
 public int getHetCount() {
   calculateGenotypeCounts();
   return genotypeCounts[Genotype.Type.HET.ordinal()];
 }
Example #3
0
 /**
  * Genotype-specific functions -- how many no-calls are there in the genotypes?
  *
  * @return number of no calls
  */
 public int getNoCallCount() {
   calculateGenotypeCounts();
   return genotypeCounts[Genotype.Type.NO_CALL.ordinal()];
 }