/**
* Genotype-specific functions -- how many hom ref calls are there in the genotypes?
*
* @return number of hom ref calls
*/
public int getHomRefCount() {
calculateGenotypeCounts();
return genotypeCounts[Genotype.Type.HOM_REF.ordinal()];
}
/**
* Genotype-specific functions -- how many het calls are there in the genotypes?
*
* @return number of het calls
*/
public int getHetCount() {
calculateGenotypeCounts();
return genotypeCounts[Genotype.Type.HET.ordinal()];
}
/**
* Genotype-specific functions -- how many no-calls are there in the genotypes?
*
* @return number of no calls
*/
public int getNoCallCount() {
calculateGenotypeCounts();
return genotypeCounts[Genotype.Type.NO_CALL.ordinal()];
}