// Gets the specified XML Schema doc if one is mentioned in the file
public static File getSchemaFile(Document xmlDoc) {
/** @todo Must be an easier way of doing this... */
logger.logComment("Getting schema file for: " + xmlDoc.getDocumentURI());
NodeList nl = xmlDoc.getChildNodes();
for (int j = 0; j < nl.getLength(); j++) {
Node node = nl.item(j);
logger.logComment("Type: " + node.getNodeType() + "Name: " + node.getNodeName());
if (node.getNodeName().equals(XML_STYLESHEET_NODE)) {
String nodeVal = node.getNodeValue();
logger.logComment("Looking at: " + nodeVal);
String xslFileName =
nodeVal.substring(nodeVal.indexOf("href=\"") + 6, nodeVal.length() - 1);
File xslFile = new File(xslFileName);
return xslFile;
}
if (node.getAttributes().getLength() > 0) {
logger.logComment("Attributes: " + node.getAttributes());
if (node.getAttributes().getNamedItem(XML_SCHEMA_LOC_ATTR) != null) {
String locString = node.getAttributes().getNamedItem(XML_SCHEMA_LOC_ATTR).getNodeValue();
logger.logComment("Loc string: " + locString);
String file = locString.split("\\s")[1];
return new File(file);
}
}
}
logger.logError("No node found with name: " + XML_STYLESHEET_NODE);
return null;
}
public static void traverseAMLforObjectNames(
HashMap partialMap, Node currentNode, HashMap ObjDef_LinkId, HashMap ModelId_ModelType) {
if (currentNode.hasChildNodes()) {
for (int i = 0; i < currentNode.getChildNodes().getLength(); i++) {
Node currentChild = currentNode.getChildNodes().item(i);
if (currentChild.getNodeName().equals("Group")) {
traverseAMLforObjectNames(partialMap, currentChild, ObjDef_LinkId, ModelId_ModelType);
}
if (currentChild.getNodeName().equals("Model")) {
if (currentChild.hasAttributes()) {
String mid = currentChild.getAttributes().getNamedItem("Model.ID").getNodeValue();
String type = currentChild.getAttributes().getNamedItem("Model.Type").getNodeValue();
ModelId_ModelType.put(mid, type);
}
// traverseAMLforObjectNames(partialMap, currentChild,
// ObjDef_LinkId);
}
if (currentChild.getNodeName().equals("ObjDef")) {
String id = currentChild.getAttributes().getNamedItem("ObjDef.ID").getNodeValue();
NodeList currentChildren = currentChild.getChildNodes();
String ObjName = "";
for (int k = 0; k < currentChildren.getLength(); k++) {
Node Child = currentChildren.item(k);
if (!Child.getNodeName().equals("AttrDef")) {
continue;
} else if (!Child.getAttributes()
.getNamedItem("AttrDef.Type")
.getNodeValue()
.equals("AT_NAME")) {
continue;
} else if (Child.hasChildNodes()) {
for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
continue;
} else {
ObjName = getTextContent(Child.getChildNodes().item(l));
ObjName = ObjName.replaceAll("\n", "\\\\n");
break;
}
}
}
}
partialMap.put(id, ObjName);
for (int j = 0; j < currentChild.getAttributes().getLength(); j++) {
if (currentChild.getAttributes().item(j).getNodeName().equals("LinkedModels.IdRefs")) {
String links =
currentChild.getAttributes().getNamedItem("LinkedModels.IdRefs").getNodeValue();
/*
* if (links.indexOf(" ") > -1) {
* Message.add("yes, yes, yes"); links =
* links.substring(0, links.indexOf(" ")); }
*/
ObjDef_LinkId.put(id, links);
}
}
}
}
}
}
private void loadFromXml(String fileName)
throws ParserConfigurationException, SAXException, IOException, ParseException {
System.out.println("NeuralNetwork : loading network topology from file " + fileName);
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder parser = factory.newDocumentBuilder();
Document doc = parser.parse(fileName);
Node nodeNeuralNetwork = doc.getDocumentElement();
if (!nodeNeuralNetwork.getNodeName().equals("neuralNetwork"))
throw new ParseException(
"[Error] NN-Load: Parse error in XML file, neural network couldn't be loaded.", 0);
// nodeNeuralNetwork ok
// indexNeuralNetworkContent -> indexStructureContent -> indexLayerContent -> indexNeuronContent
// -> indexNeuralInputContent
NodeList nodeNeuralNetworkContent = nodeNeuralNetwork.getChildNodes();
for (int innc = 0; innc < nodeNeuralNetworkContent.getLength(); innc++) {
Node nodeStructure = nodeNeuralNetworkContent.item(innc);
if (nodeStructure.getNodeName().equals("structure")) { // for structure element
NodeList nodeStructureContent = nodeStructure.getChildNodes();
for (int isc = 0; isc < nodeStructureContent.getLength(); isc++) {
Node nodeLayer = nodeStructureContent.item(isc);
if (nodeLayer.getNodeName().equals("layer")) { // for layer element
NeuralLayer neuralLayer = new NeuralLayer(this);
this.listLayers.add(neuralLayer);
NodeList nodeLayerContent = nodeLayer.getChildNodes();
for (int ilc = 0; ilc < nodeLayerContent.getLength(); ilc++) {
Node nodeNeuron = nodeLayerContent.item(ilc);
if (nodeNeuron.getNodeName().equals("neuron")) { // for neuron in layer
Neuron neuron =
new Neuron(
Double.parseDouble(((Element) nodeNeuron).getAttribute("threshold")),
neuralLayer);
neuralLayer.listNeurons.add(neuron);
NodeList nodeNeuronContent = nodeNeuron.getChildNodes();
for (int inc = 0; inc < nodeNeuronContent.getLength(); inc++) {
Node nodeNeuralInput = nodeNeuronContent.item(inc);
// if (nodeNeuralInput==null) System.out.print("-"); else System.out.print("*");
if (nodeNeuralInput.getNodeName().equals("input")) {
// System.out.println("neuron at
// STR:"+innc+" LAY:"+isc+" NEU:"+ilc+" INP:"+inc);
NeuralInput neuralInput =
new NeuralInput(
Double.parseDouble(((Element) nodeNeuralInput).getAttribute("weight")),
neuron);
neuron.listInputs.add(neuralInput);
}
}
}
}
}
}
}
}
}
/**
* This is just a helper function for the fromXML method.
*
* @param child
*/
public void importHelper(Node child) {
if (child.getFirstChild() instanceof Text) {
Text text = (Text) child.getFirstChild();
String data = text.getData();
if (child.getNodeName().equals("description")) {
setDescription(data);
}
if (child.getNodeName().equals("refChildPattern")) {
int decID = Integer.parseInt(data.substring(1));
subPatternsID.add(decID);
}
}
}
static {
try {
URL url = SpellCheckActivator.bundleContext.getBundle().getResource(RESOURCE_LOC);
InputStream stream = url.openStream();
if (stream == null) throw new IOException();
// strict parsing options
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setValidating(false);
factory.setIgnoringComments(true);
factory.setIgnoringElementContentWhitespace(true);
// parses configuration xml
/*-
* Warning: Felix is unable to import the com.sun.rowset.internal
* package, meaning this can't use the XmlErrorHandler. This causes
* a warning and a default handler to be attached. Otherwise this
* should have: builder.setErrorHandler(new XmlErrorHandler());
*/
DocumentBuilder builder = factory.newDocumentBuilder();
Document doc = builder.parse(stream);
// iterates over nodes, parsing contents
Node root = doc.getChildNodes().item(1);
NodeList categories = root.getChildNodes();
for (int i = 0; i < categories.getLength(); ++i) {
Node node = categories.item(i);
if (node.getNodeName().equals(NODE_DEFAULTS)) {
parseDefaults(node.getChildNodes());
} else if (node.getNodeName().equals(NODE_LOCALES)) {
parseLocales(node.getChildNodes());
} else {
logger.warn("Unrecognized category: " + node.getNodeName());
}
}
} catch (IOException exc) {
logger.error("Unable to load spell checker parameters", exc);
} catch (SAXException exc) {
logger.error("Unable to parse spell checker parameters", exc);
} catch (ParserConfigurationException exc) {
logger.error("Unable to parse spell checker parameters", exc);
}
}
private void guardaRes(String resu, CliGol cliGol)
throws ParserConfigurationException, SAXException, IOException {
String[] nodos = {"NoHit", "Hit", "Buro"};
DocumentBuilder db = DocumentBuilderFactory.newInstance().newDocumentBuilder();
InputSource is = new InputSource(new StringReader(resu));
Document xml = db.parse(is);
Element raiz = xml.getDocumentElement();
String nombre = obtenerNombre(raiz);
for (String s : nodos) {
Node nodo =
raiz.getElementsByTagName(s) == null ? null : raiz.getElementsByTagName(s).item(0);
if (nodo != null) {
String informacion = sustraerInformacionNodo(cliGol, nodo);
guardarEnListas(nodo.getNodeName(), nombre + "," + informacion);
}
}
}
public static final Map parseFrame(Node node) {
NodeList bones = node.getChildNodes();
Map bone_infos = new HashMap();
for (int i = 0; i < bones.getLength(); i++) {
Node bone = bones.item(i);
if (bone.getNodeName().equals("transform")) {
String name = bone.getAttributes().getNamedItem("name").getNodeValue();
float[] matrix = new float[16];
matrix[0 * 4 + 0] = getAttrFloat(bone, "m00");
matrix[0 * 4 + 1] = getAttrFloat(bone, "m01");
matrix[0 * 4 + 2] = getAttrFloat(bone, "m02");
matrix[0 * 4 + 3] = getAttrFloat(bone, "m03");
matrix[1 * 4 + 0] = getAttrFloat(bone, "m10");
matrix[1 * 4 + 1] = getAttrFloat(bone, "m11");
matrix[1 * 4 + 2] = getAttrFloat(bone, "m12");
matrix[1 * 4 + 3] = getAttrFloat(bone, "m13");
matrix[2 * 4 + 0] = getAttrFloat(bone, "m20");
matrix[2 * 4 + 1] = getAttrFloat(bone, "m21");
matrix[2 * 4 + 2] = getAttrFloat(bone, "m22");
matrix[2 * 4 + 3] = getAttrFloat(bone, "m23");
matrix[3 * 4 + 0] = getAttrFloat(bone, "m30");
matrix[3 * 4 + 1] = getAttrFloat(bone, "m31");
matrix[3 * 4 + 2] = getAttrFloat(bone, "m32");
matrix[3 * 4 + 3] = getAttrFloat(bone, "m33");
bone_infos.put(name, matrix);
}
}
return bone_infos;
}
private List<Node> getChildNodes(Node parentNode, String tagName) {
List<Node> nodeList = new ArrayList<Node>();
for (Node child = parentNode.getFirstChild(); child != null; child = child.getNextSibling()) {
if (child.getNodeType() == Node.ELEMENT_NODE && tagName.equals(child.getNodeName())) {
nodeList.add(child);
}
}
return nodeList;
}
public String getAtributo(Node nodo, String nombreAtributo) {
NamedNodeMap atts;
atts = nodo.getAttributes();
if (atts == null) return null;
for (int i = 0; i < atts.getLength(); i++) {
Node atributo = atts.item(i);
if (atributo.getNodeName().equalsIgnoreCase(nombreAtributo)) return atributo.getNodeValue();
}
return null;
}
private String getXPath(Node node, String xpath) {
if (node == null) {
return "";
}
String nodeName = node.getNodeName();
Node parent = node.getParentNode();
if (parent == null) {
return xpath;
}
return getXPath(parent, "/" + nodeName + xpath);
}
private void call(Node operation)
throws ParserConfigurationException, TransformerConfigurationException {
String opName = operation.getNodeName();
if (opName.equals("call")) {
String script =
Utils.combine(Utils.getParentDir(this.currentScript), operation.getTextContent());
call(script);
} else if (opName.equals("apply")) processApply(operation);
else if (opName.equals("xml")) processXml(operation);
else if (opName.equals("txt")) processTxt(operation);
else if (opName.equals("copy")) processCopy(operation);
else if (opName.equals("delete")) processDelete(operation);
}
FoundItem getFoundItem(Node n, String text) {
String s = n.getNodeValue();
if (s == null) s = n.getNodeName();
String string;
if (text != null) {
int index = s.indexOf(text);
int left = Math.max(0, index - 5);
int right = Math.min(s.length(), index + text.length() + 20);
string = s.substring(left, right);
} else string = s;
TreeNode tn = jtree.getTreeNode(n);
TreePath tp = getTreePath(tn);
return new FoundItem(string, tp);
}
private static final Skeleton parseSkeleton(Node skel_node) {
Map name_to_bone_map = new HashMap();
Map initial_pose =
AnimationLoader.parseFrame(ConvertToBinary.getNodeByName("init_pose", skel_node));
NodeList bone_list = ConvertToBinary.getNodeByName("bones", skel_node).getChildNodes();
Map bone_parent_map = new HashMap();
for (int i = 0; i < bone_list.getLength(); i++) {
Node bone_node = bone_list.item(i);
if (bone_node.getNodeName().equals("bone")) {
String bone_name = bone_node.getAttributes().getNamedItem("name").getNodeValue();
String bone_parent_name = bone_node.getAttributes().getNamedItem("parent").getNodeValue();
// System.out.println("bone name = " + bone_name + " parent name = " + bone_parent_name);
bone_parent_map.put(bone_name, bone_parent_name);
}
}
Map bone_children_map = new HashMap();
Iterator it = bone_parent_map.keySet().iterator();
String root = null;
while (it.hasNext()) {
String name = (String) it.next();
String parent = (String) bone_parent_map.get(name);
if (bone_parent_map.get(parent) == null) {
if (root != null) {
System.out.println(
"WARNING: Multiple roots in skeleton, root = "
+ root
+ ", additional root = "
+ name);
parent = root;
bone_parent_map.put(name, parent);
} else root = name;
}
List parent_children = (List) bone_children_map.get(parent);
if (parent_children == null) {
parent_children = new ArrayList();
bone_children_map.put(parent, parent_children);
}
parent_children.add(name);
}
Bone bone_root = buildBone((byte) 0, bone_children_map, root, name_to_bone_map);
return new Skeleton(bone_root, initial_pose, name_to_bone_map);
}
private static final Map[] parseAnimation(Node node) {
NodeList frames = node.getChildNodes();
Map anim_infos_map = new HashMap();
for (int i = 0; i < frames.getLength(); i++) {
Node frame = frames.item(i);
if (frame.getNodeName().equals("frame")) {
int frame_index = getAttrInt(frame, "index");
assert frame_index >= 0;
anim_infos_map.put(new Integer(frame_index), parseFrame(frame));
}
}
Map[] anim_infos = new Map[anim_infos_map.size()];
Iterator it = anim_infos_map.keySet().iterator();
while (it.hasNext()) {
Integer frame_index_obj = (Integer) it.next();
Map frame = (Map) anim_infos_map.get(frame_index_obj);
int index = frame_index_obj.intValue();
assert anim_infos[index] == null;
anim_infos[index] = frame;
}
return anim_infos;
}
public static void dumpElement(Element element, String indent) {
System.out.println(indent + "Element: " + element.getNodeName());
NamedNodeMap attributes = element.getAttributes();
if ((attributes != null) && (attributes.getLength() > 0)) {
System.out.println(indent + "Attributes:");
for (int i = 0; i < attributes.getLength(); i++) {
Node attr = attributes.item(i);
System.out.println(indent + " " + attr.getNodeName() + "=" + attr.getNodeValue());
}
}
NodeList children = element.getChildNodes();
for (int i = 0; i < children.getLength(); i++) {
Node n = children.item(i);
if (n instanceof Element) {
dumpElement((Element) n, indent + " ");
} else if (n instanceof CharacterData) {
System.out.println(indent + " " + ((CharacterData) n).getData());
}
}
}
/**
* @param list
* @param parent
* @exception NumberFormatException
* @exception DicomException
*/
void addAttributesFromNodeToList(AttributeList list, Node parent)
throws NumberFormatException, DicomException {
if (parent != null) {
Node node = parent.getFirstChild();
while (node != null) {
String elementName = node.getNodeName();
NamedNodeMap attributes = node.getAttributes();
if (attributes != null) {
Node vrNode = attributes.getNamedItem("vr");
Node groupNode = attributes.getNamedItem("group");
Node elementNode = attributes.getNamedItem("element");
if (vrNode != null && groupNode != null && elementNode != null) {
String vrString = vrNode.getNodeValue();
String groupString = groupNode.getNodeValue();
String elementString = elementNode.getNodeValue();
if (vrString != null && groupString != null && elementString != null) {
byte[] vr = vrString.getBytes();
int group = Integer.parseInt(groupString, 16);
int element = Integer.parseInt(elementString, 16);
AttributeTag tag = new AttributeTag(group, element);
if ((group % 2 == 0 && element == 0)
|| (group == 0x0008 && element == 0x0001)
|| (group == 0xfffc && element == 0xfffc)) {
// System.err.println("ignoring group length or length to end or dataset trailing
// padding "+tag);
} else {
if (vrString.equals("SQ")) {
SequenceAttribute a = new SequenceAttribute(tag);
// System.err.println("Created "+a);
if (node.hasChildNodes()) {
Node childNode = node.getFirstChild();
while (childNode != null) {
String childNodeName = childNode.getNodeName();
// System.err.println("childNodeName = "+childNodeName);
if (childNodeName != null && childNodeName.equals("Item")) {
// should check item number, but ignore for now :(
// System.err.println("Adding item to sequence");
AttributeList itemList = new AttributeList();
addAttributesFromNodeToList(itemList, childNode);
a.addItem(itemList);
}
// else may be a #text element in between
childNode = childNode.getNextSibling();
}
}
// System.err.println("Sequence Attribute is "+a);
list.put(tag, a);
} else {
Attribute a = AttributeFactory.newAttribute(tag, vr);
// System.err.println("Created "+a);
if (node.hasChildNodes()) {
Node childNode = node.getFirstChild();
while (childNode != null) {
String childNodeName = childNode.getNodeName();
// System.err.println("childNodeName = "+childNodeName);
if (childNodeName != null && childNodeName.equals("value")) {
// should check value number, but ignore for now :(
String value = childNode.getTextContent();
// System.err.println("Value value = "+value);
if (value != null) {
value =
StringUtilities.removeLeadingOrTrailingWhitespaceOrISOControl(
value); // just in case
a.addValue(value);
}
}
// else may be a #text element in between
childNode = childNode.getNextSibling();
}
}
// System.err.println("Attribute is "+a);
list.put(tag, a);
}
}
}
}
}
node = node.getNextSibling();
}
}
}
protected void init(Element root) {
NodeList children = root.getChildNodes();
for (int i = 0; i < children.getLength(); i++) {
Node child = children.item(i);
if (child.getNodeName().equals("meta")) {
Element meta = (Element) child;
String value = XMLUtil.getText(meta);
this.metaAttributes.put(meta.getAttribute("name"), value);
}
}
// handle registers - OPTIONAL
Element r = XMLUtil.getChildElement(root, "registers");
if (r != null) {
List registers = XMLUtil.getChildElements(r, "register");
for (int i = 0; i < registers.size(); i++) {
Element register = (Element) registers.get(i);
RegisterDescriptor registerDescriptor =
DescriptorFactory.getFactory().createRegisterDescriptor(register);
registerDescriptor.setParent(this);
this.registers.add(registerDescriptor);
}
}
// handle global-conditions - OPTIONAL
Element globalConditionsElement = XMLUtil.getChildElement(root, "global-conditions");
if (globalConditionsElement != null) {
Element globalConditions = XMLUtil.getChildElement(globalConditionsElement, "conditions");
ConditionsDescriptor conditionsDescriptor =
DescriptorFactory.getFactory().createConditionsDescriptor(globalConditions);
conditionsDescriptor.setParent(this);
this.globalConditions = conditionsDescriptor;
}
// handle initial-steps - REQUIRED
Element intialActionsElement = XMLUtil.getChildElement(root, "initial-actions");
List initialActions = XMLUtil.getChildElements(intialActionsElement, "action");
for (int i = 0; i < initialActions.size(); i++) {
Element initialAction = (Element) initialActions.get(i);
ActionDescriptor actionDescriptor =
DescriptorFactory.getFactory().createActionDescriptor(initialAction);
actionDescriptor.setParent(this);
this.initialActions.add(actionDescriptor);
}
// handle global-actions - OPTIONAL
Element globalActionsElement = XMLUtil.getChildElement(root, "global-actions");
if (globalActionsElement != null) {
List globalActions = XMLUtil.getChildElements(globalActionsElement, "action");
for (int i = 0; i < globalActions.size(); i++) {
Element globalAction = (Element) globalActions.get(i);
ActionDescriptor actionDescriptor =
DescriptorFactory.getFactory().createActionDescriptor(globalAction);
actionDescriptor.setParent(this);
this.globalActions.add(actionDescriptor);
}
}
// handle common-actions - OPTIONAL
// - Store actions in HashMap for now. When parsing Steps, we'll resolve
// any common actions into local references.
Element commonActionsElement = XMLUtil.getChildElement(root, "common-actions");
if (commonActionsElement != null) {
List commonActions = XMLUtil.getChildElements(commonActionsElement, "action");
for (int i = 0; i < commonActions.size(); i++) {
Element commonAction = (Element) commonActions.get(i);
ActionDescriptor actionDescriptor =
DescriptorFactory.getFactory().createActionDescriptor(commonAction);
actionDescriptor.setParent(this);
addCommonAction(actionDescriptor);
}
}
// handle timer-functions - OPTIONAL
Element timerFunctionsElement = XMLUtil.getChildElement(root, "trigger-functions");
if (timerFunctionsElement != null) {
List timerFunctions = XMLUtil.getChildElements(timerFunctionsElement, "trigger-function");
for (int i = 0; i < timerFunctions.size(); i++) {
Element timerFunction = (Element) timerFunctions.get(i);
Integer id = new Integer(timerFunction.getAttribute("id"));
FunctionDescriptor function =
DescriptorFactory.getFactory()
.createFunctionDescriptor(XMLUtil.getChildElement(timerFunction, "function"));
function.setParent(this);
this.timerFunctions.put(id, function);
}
}
// handle steps - REQUIRED
Element stepsElement = XMLUtil.getChildElement(root, "steps");
List steps = XMLUtil.getChildElements(stepsElement, "step");
for (int i = 0; i < steps.size(); i++) {
Element step = (Element) steps.get(i);
StepDescriptor stepDescriptor =
DescriptorFactory.getFactory().createStepDescriptor(step, this);
this.steps.add(stepDescriptor);
}
// handle splits - OPTIONAL
Element splitsElement = XMLUtil.getChildElement(root, "splits");
if (splitsElement != null) {
List split = XMLUtil.getChildElements(splitsElement, "split");
for (int i = 0; i < split.size(); i++) {
Element s = (Element) split.get(i);
SplitDescriptor splitDescriptor = DescriptorFactory.getFactory().createSplitDescriptor(s);
splitDescriptor.setParent(this);
this.splits.add(splitDescriptor);
}
}
// handle joins - OPTIONAL:
Element joinsElement = XMLUtil.getChildElement(root, "joins");
if (joinsElement != null) {
List join = XMLUtil.getChildElements(joinsElement, "join");
for (int i = 0; i < join.size(); i++) {
Element s = (Element) join.get(i);
JoinDescriptor joinDescriptor = DescriptorFactory.getFactory().createJoinDescriptor(s);
joinDescriptor.setParent(this);
this.joins.add(joinDescriptor);
}
}
}
public void serializeNode(Node node, Writer writer, String indentLevel) throws IOException {
// Determine action based on node type
switch (node.getNodeType()) {
case Node.DOCUMENT_NODE:
writer.write("<?xml version = '1.0'?>"); // "<xml version=\"1.0\">");
writer.write(lineSeparator);
// recurse on each child
NodeList nodes = node.getChildNodes();
if (nodes != null) {
for (int i = 0; i < nodes.getLength(); i++) {
serializeNode(nodes.item(i), writer, "");
}
}
/*
* Document doc = (Document)node;
* serializeNode(doc.getDocumentElement( ), writer, " ");
*/
break;
case Node.ELEMENT_NODE:
String name = node.getNodeName();
writer.write(indentLevel + "<" + name);
NamedNodeMap attributes = node.getAttributes();
for (int i = 0; i < attributes.getLength(); i++) {
Node current = attributes.item(i);
writer.write(" " + current.getNodeName() + "=\"" + current.getNodeValue() + "\"");
}
writer.write(">");
// recurse on each child
NodeList children = node.getChildNodes();
if (children != null) {
if ((children.item(0) != null) && (children.item(0).getNodeType() == Node.ELEMENT_NODE)) {
writer.write(lineSeparator);
}
for (int i = 0; i < children.getLength(); i++) {
serializeNode(children.item(i), writer, indentLevel + indent);
}
if ((children.item(0) != null)
&& (children.item(children.getLength() - 1).getNodeType() == Node.ELEMENT_NODE)) {
writer.write(indentLevel);
}
}
writer.write("</" + name + ">");
writer.write(lineSeparator);
break;
case Node.TEXT_NODE:
writer.write(node.getNodeValue());
break;
case Node.CDATA_SECTION_NODE:
writer.write("<![CDATA[" + node.getNodeValue() + "]]>");
break;
case Node.COMMENT_NODE:
writer.write(indentLevel + "<!-- " + node.getNodeValue() + " -->");
writer.write(lineSeparator);
break;
case Node.PROCESSING_INSTRUCTION_NODE:
writer.write("<?" + node.getNodeName() + " " + node.getNodeValue() + "?>");
writer.write(lineSeparator);
break;
case Node.ENTITY_REFERENCE_NODE:
writer.write("&" + node.getNodeName() + ";");
break;
case Node.DOCUMENT_TYPE_NODE:
DocumentType docType = (DocumentType) node;
writer.write("<!DOCTYPE " + docType.getName());
if (docType.getPublicId() != null) {
System.out.print(" PUBLIC \"" + docType.getPublicId() + "\" ");
} else {
writer.write(" SYSTEM ");
}
writer.write("\"" + docType.getSystemId() + "\">");
writer.write(lineSeparator);
break;
}
}
/**
* Returns the full name (i.e. the name including an eventual namespace prefix) of the element.
*
* @webref xml:method
* @brief Gets the element's full name
* @return the name, or null if the element only contains #PCDATA.
*/
public String getName() {
// return name;
return node.getNodeName();
}
private static void parseNet(
Node node,
EPC net,
HashMap ObjDef_Name,
HashMap ObjDef_LinkId,
HashMap function_LinkId,
String ModelName)
throws Exception {
HashMap mapping = new HashMap();
// read all nodes
NodeList nodes = node.getChildNodes();
net.setIdentifier(ModelName);
// Message.add("here I am still happy");
for (int i = 0; i < nodes.getLength(); i++) {
Node n = nodes.item(i);
if (!n.getNodeName().equals("ObjOcc")) {
continue;
}
if (n.getAttributes().getNamedItem("SymbolNum") == null) {
continue;
}
String symbolnum = n.getAttributes().getNamedItem("SymbolNum").getNodeValue();
if (!(symbolnum.equals("ST_FUNC")
|| symbolnum.equals("ST_EV")
|| symbolnum.equals("ST_OPR_AND_1")
|| symbolnum.equals("ST_OPR_OR_1")
|| symbolnum.equals("ST_OPR_XOR_1"))) {
continue;
}
String ObjDef = n.getAttributes().getNamedItem("ObjDef.IdRef").getNodeValue();
String ownName = (String) ObjDef_Name.get(ObjDef);
// Message.add("YES " +
// n.getAttributes().getNamedItem("ObjOcc.ID").getNodeValue());
String id = n.getAttributes().getNamedItem("ObjOcc.ID").getNodeValue();
// Message.add(id + " " + ownName);
if (ownName == null || ownName == "") {
ownName = id.substring(7, 11);
}
if (symbolnum.equals("ST_FUNC")) {
if (ObjDef_LinkId.containsKey(ObjDef)) {
EPCSubstFunction sf =
(EPCSubstFunction)
net.addFunction(
new EPCSubstFunction(new LogEvent(ownName, "unknown:normal"), net, null));
sf.setIdentifier(ownName);
mapping.put(id, sf);
function_LinkId.put(sf, ObjDef_LinkId.get(ObjDef));
} else {
EPCFunction f =
net.addFunction(new EPCFunction(new LogEvent(ownName, "unknown:normal"), net));
f.setIdentifier(ownName);
mapping.put(id, f);
}
} else if (symbolnum.equals("ST_EV")) {
EPCEvent e = net.addEvent(new EPCEvent(ownName, net));
e.setIdentifier(ownName);
mapping.put(id, e);
} else if (symbolnum.equals("ST_OPR_AND_1")) {
EPCConnector c = net.addConnector(new EPCConnector(EPCConnector.AND, net));
mapping.put(id, c);
} else if (symbolnum.equals("ST_OPR_OR_1")) {
// EPCConnector c = net.addConnector(new
// EPCConnector(EPCConnector.OR, net));
EPCConnector c = net.addConnector(new EPCConnector(EPCConnector.AND, net));
mapping.put(id, c);
} else if (symbolnum.equals("ST_OPR_XOR_1")) {
EPCConnector c = net.addConnector(new EPCConnector(EPCConnector.XOR, net));
mapping.put(id, c);
}
}
for (int i = 0; i < nodes.getLength(); i++) {
Node n = nodes.item(i);
if (!n.getNodeName().equals("ObjOcc")) {
continue;
}
if (n.getAttributes().getNamedItem("SymbolNum") == null) {
continue;
}
String symbolnum = n.getAttributes().getNamedItem("SymbolNum").getNodeValue();
if (!(symbolnum.equals("ST_FUNC")
|| symbolnum.equals("ST_EV")
|| symbolnum.equals("ST_OPR_AND_1")
|| symbolnum.equals("ST_OPR_OR_1")
|| symbolnum.equals("ST_OPR_XOR_1"))) {
continue;
}
String source = n.getAttributes().getNamedItem("ObjOcc.ID").getNodeValue();
if (n.hasChildNodes()) {
for (int j = 0; j < n.getChildNodes().getLength(); j++) {
if (n.getChildNodes().item(j).getNodeName().equals("CxnOcc")) {
Node CxnOcc = n.getChildNodes().item(j);
String dest = CxnOcc.getAttributes().getNamedItem("ToObjOcc.IdRef").getNodeValue();
if (mapping.get(dest) == null) {
continue;
}
if (net.addEdge((EPCObject) mapping.get(source), (EPCObject) mapping.get(dest))
== null) {
throw (new Exception(
"<html>Structural properties of EPCs are violated in input file.<br>"
+ "The following edge could not be added:<br><br>"
+ mapping.get(source).toString()
+ " ==> "
+ mapping.get(dest).toString()
+ "<br><br>Import aborted.</html>"));
}
}
}
}
}
}
public static EPCResult traverseAML(
EPCResult partialResult,
Node currentNode,
Object parent,
HashMap ObjDef_Name,
HashMap ObjDef_LinkId,
HashMap modelid_net,
HashMap function_LinkId)
throws Exception {
if (currentNode.hasChildNodes()) {
for (int i = 0; i < currentNode.getChildNodes().getLength(); i++) {
Node currentChild = currentNode.getChildNodes().item(i);
if (currentChild.getNodeName().equals("Group")) {
String id = currentChild.getAttributes().getNamedItem("Group.ID").getNodeValue();
String GroupName = "";
if (currentChild.hasChildNodes()) {
NodeList currentChildren = currentChild.getChildNodes();
for (int j = 0; j < currentChildren.getLength(); j++) {
Node Child = currentChildren.item(j);
if (!(Child.getNodeName().equals("AttrDef"))) {
continue;
}
if (Child.getAttributes()
.getNamedItem("AttrDef.Type")
.getNodeValue()
.equals("AT_NAME")) {
if (Child.hasChildNodes()) {
for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
continue;
} else {
GroupName = getTextContent(Child.getChildNodes().item(l));
}
}
break;
}
}
}
if (GroupName.equals("")) {
GroupName = id;
}
}
ModelHierarchyDirectory dir = new ModelHierarchyDirectory(id, GroupName);
partialResult.addInHierarchy(dir, parent, GroupName);
partialResult =
traverseAML(
partialResult,
currentChild,
dir,
ObjDef_Name,
ObjDef_LinkId,
modelid_net,
function_LinkId);
}
if (currentChild.getNodeName().equals("Model")
&& currentChild
.getAttributes()
.getNamedItem("Model.Type")
.getNodeValue()
.equals("MT_EEPC")) {
String ModelName = "gaga";
if (currentChild.hasChildNodes()) {
NodeList currentChildren = currentChild.getChildNodes();
for (int j = 0; j < currentChildren.getLength(); j++) {
Node Child = currentChildren.item(j);
if (!(Child.getNodeName().equals("AttrDef"))) {
continue;
}
if (Child.getAttributes()
.getNamedItem("AttrDef.Type")
.getNodeValue()
.equals("AT_NAME")) {
if (Child.hasChildNodes()) {
for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
continue;
} else {
ModelName = getTextContent(Child.getChildNodes().item(l));
}
}
}
break;
}
}
}
try {
ModelName = ModelName.replaceAll("\n", " ");
EPC net = read(currentChild, ObjDef_Name, ObjDef_LinkId, function_LinkId, ModelName);
partialResult.addInHierarchy(net, parent, ModelName);
modelid_net.put(
currentChild.getAttributes().getNamedItem("Model.ID").getNodeValue(), net);
} catch (Throwable x) {
Message.add(x.getClass().getName());
// throw new IOException(x.getMessage());
}
}
}
}
return partialResult;
}
/** Prints the specified node, recursively. */
public String print(Node node) {
// is there anything to do?
if (node == null) {
return sb.toString();
}
int type = node.getNodeType();
switch (type) {
// print document
case Node.DOCUMENT_NODE:
{
return print(((Document) node).getDocumentElement());
// out.flush();
// break;
}
// print element with attributes
case Node.ELEMENT_NODE:
{
sb.append('<');
sb.append(node.getNodeName());
Attr attrs[] = sortAttributes(node.getAttributes());
for (int i = 0; i < attrs.length; i++) {
Attr attr = attrs[i];
sb.append(' ');
sb.append(attr.getNodeName());
sb.append("=\"");
sb.append(normalize(attr.getNodeValue()));
sb.append('"');
}
sb.append('>');
NodeList children = node.getChildNodes();
if (children != null) {
int len = children.getLength();
for (int i = 0; i < len; i++) {
print(children.item(i));
}
}
break;
}
// handle entity reference nodes
case Node.ENTITY_REFERENCE_NODE:
{
if (canonical) {
NodeList children = node.getChildNodes();
if (children != null) {
int len = children.getLength();
for (int i = 0; i < len; i++) {
print(children.item(i));
}
}
} else {
sb.append('&');
sb.append(node.getNodeName());
sb.append(';');
}
break;
}
// print cdata sections
case Node.CDATA_SECTION_NODE:
{
if (canonical) {
sb.append(normalize(node.getNodeValue()));
} else {
sb.append("<![CDATA[");
sb.append(node.getNodeValue());
sb.append("]]>");
}
break;
}
// print text
case Node.TEXT_NODE:
{
sb.append(normalize(node.getNodeValue()));
break;
}
// print processing instruction
case Node.PROCESSING_INSTRUCTION_NODE:
{
sb.append("<?");
sb.append(node.getNodeName());
String data = node.getNodeValue();
if (data != null && data.length() > 0) {
sb.append(' ');
sb.append(data);
}
sb.append("?>");
break;
}
// handle entity reference nodes
case Node.DOCUMENT_FRAGMENT_NODE:
{
NodeList children = node.getChildNodes();
if (children != null) {
int len = children.getLength();
for (int i = 0; i < len; i++) {
print(children.item(i));
}
}
break;
}
}
if (type == Node.ELEMENT_NODE) {
sb.append("</");
sb.append(node.getNodeName());
sb.append('>');
}
return sb.toString();
} // print(Node)
