private DicomObject mkStgCmtResult(Association as, DicomObject rqdata) {
DicomObject result = new BasicDicomObject();
result.putString(Tag.TransactionUID, VR.UI, rqdata.getString(Tag.TransactionUID));
DicomElement rqsq = rqdata.get(Tag.ReferencedSOPSequence);
DicomElement resultsq = result.putSequence(Tag.ReferencedSOPSequence);
if (stgcmtRetrieveAET != null) {
result.putString(Tag.RetrieveAETitle, VR.AE, stgcmtRetrieveAET);
}
DicomElement failedsq = null;
File dir = getDir(as);
for (int i = 0, n = rqsq.countItems(); i < n; i++) {
DicomObject rqItem = rqsq.getDicomObject(i);
String uid = rqItem.getString(Tag.ReferencedSOPInstanceUID);
DicomObject resultItem = new BasicDicomObject();
rqItem.copyTo(resultItem);
if (stgcmtRetrieveAETs != null) {
resultItem.putString(Tag.RetrieveAETitle, VR.AE, stgcmtRetrieveAETs);
}
File f = new File(dir, uid);
if (f.isFile()) {
resultsq.addDicomObject(resultItem);
} else {
resultItem.putInt(Tag.FailureReason, VR.US, NO_SUCH_OBJECT_INSTANCE);
if (failedsq == null) {
failedsq = result.putSequence(Tag.FailedSOPSequence);
}
failedsq.addDicomObject(resultItem);
}
}
return result;
}
private DicomObject toSCN(DicomObject ian) {
DicomObject scn = new BasicDicomObject();
scn.putString(Tag.PatientID, VR.LO, ian.getString(Tag.PatientID));
scn.putString(Tag.PatientName, VR.PN, ian.getString(Tag.PatientName));
scn.putString(Tag.StudyID, VR.SH, ian.getString(Tag.StudyID));
scn.putString(Tag.StudyInstanceUID, VR.UI, ian.getString(Tag.StudyInstanceUID));
DicomElement ianSeriesSeq = ian.get(Tag.ReferencedSeriesSequence);
DicomElement scnSeriesSeq = scn.putSequence(Tag.ReferencedSeriesSequence);
DicomObject ianSeriesItem, scnSeriesItem, scnSOPItem;
DicomElement ianSOPSeq, scnSOPSeq;
for (int i = 0, n = ianSeriesSeq.countItems(); i < n; ++i) {
ianSeriesItem = ianSeriesSeq.getDicomObject(i);
scnSeriesItem = new BasicDicomObject();
scnSeriesItem.putString(
Tag.SeriesInstanceUID, VR.UI, ianSeriesItem.getString(Tag.SeriesInstanceUID));
scnSeriesSeq.addDicomObject(scnSeriesItem);
ianSOPSeq = ianSeriesItem.get(Tag.ReferencedSOPSequence);
scnSOPSeq = scnSeriesItem.putSequence(Tag.ReferencedImageSequence);
for (int j = 0, m = ianSOPSeq.countItems(); j < m; ++j) {
scnSOPItem = new BasicDicomObject();
ianSOPSeq.getDicomObject(j).exclude(INSTANCE_AVAILABILITY).copyTo(scnSOPItem);
scnSOPSeq.addDicomObject(scnSOPItem);
}
}
return scn;
}
/**
* Set query attributes for C-Move
*
* @return DicomObject contains initial set of attributes for query
*/
private DicomObject setCmoveAttributes() {
DicomObject returnObject = new BasicDicomObject();
returnObject.putString(Tag.SOPClassUID, VR.UI, UID.RTPlanStorage);
returnObject.putString(Tag.SOPInstanceUID, VR.UI, "1.2.34.56");
returnObject.putString(Tag.QueryRetrieveLevel, VR.CS, "IMAGE");
returnObject.putString(Tag.PatientID, VR.LO, "");
returnObject.putString(Tag.StudyInstanceUID, VR.UI, "1.2.1.1");
returnObject.putString(Tag.SeriesInstanceUID, VR.UI, "1.2.1.2");
return returnObject;
}
protected static DicomObject createDicomMetaData(
MimeType mimeType,
String filename,
String description,
TCReferencedInstance ref,
String patId,
String issuerOfPatId,
String patName,
String modality) {
Date now = new Date();
DicomObject attrs = new BasicDicomObject();
// patient level
if (patId != null) {
attrs.putString(Tag.PatientID, VR.LO, patId);
}
if (issuerOfPatId != null) {
attrs.putString(Tag.IssuerOfPatientID, VR.LO, issuerOfPatId);
}
if (patName != null) {
attrs.putString(Tag.PatientName, VR.PN, patName);
}
// study level
attrs.putString(Tag.StudyInstanceUID, VR.UI, ref.getStudyUID());
// series level
attrs.putString(Tag.SeriesInstanceUID, VR.UI, ref.getSeriesUID());
attrs.putString(Tag.SeriesDescription, VR.LO, SERIES_DESCRIPTION);
attrs.putString(Tag.Modality, VR.CS, modality);
// instance level
attrs.putString(Tag.SOPInstanceUID, VR.UI, ref.getInstanceUID());
attrs.putString(Tag.SOPClassUID, VR.UI, ref.getClassUID());
attrs.putInt(Tag.InstanceNumber, VR.IS, ref.getInstanceNumber());
attrs.putDate(Tag.InstanceCreationDate, VR.DA, now);
attrs.putDate(Tag.InstanceCreationTime, VR.TM, now);
attrs.putDate(Tag.ContentDate, VR.DA, now);
attrs.putDate(Tag.ContentTime, VR.TM, now);
attrs.putString(Tag.ContentLabel, VR.CS, filename);
attrs.putString(
Tag.ContentDescription,
VR.CS,
description != null && !description.isEmpty() ? description : getFileName(filename));
return attrs;
}
private DicomStreamMetaData copyMeta(DicomImageReader reader, String tsuid) throws IOException {
DicomStreamMetaData oldMeta = (DicomStreamMetaData) reader.getStreamMetadata();
DicomStreamMetaData ret = new DicomStreamMetaData();
DicomObject ds = oldMeta.getDicomObject();
DicomObject newDs = new BasicDicomObject();
ds.copyTo(newDs);
newDs.putString(Tag.TransferSyntaxUID, VR.UI, tsuid);
ret.setDicomObject(newDs);
return ret;
}
private int sendIAN(String aet, DicomObject ian)
throws IOException, InterruptedException, GeneralSecurityException {
String iuid = UIDUtils.createUID();
Association assoc = open(aet);
TransferCapability tc =
assoc.getTransferCapabilityAsSCU(UID.InstanceAvailabilityNotificationSOPClass);
RspHandler rspHandler = new RspHandler();
if (tc == null) {
tc = assoc.getTransferCapabilityAsSCU(UID.BasicStudyContentNotificationSOPClassRetired);
if (tc == null) {
throw new NoPresentationContextException(
UIDDictionary.getDictionary()
.prompt(
isOfferStudyContentNotification()
? UID.BasicStudyContentNotificationSOPClassRetired
: UID.InstanceAvailabilityNotificationSOPClass));
}
String tsuid = tc.getTransferSyntax()[0];
DicomObject scn = toSCN(ian);
scn.putString(Tag.SOPInstanceUID, VR.UI, iuid);
scn.putString(Tag.SOPClassUID, VR.UI, UID.BasicStudyContentNotificationSOPClassRetired);
LOG.debug("Study Content Notification to {}:\n{}", aet, scn);
assoc.cstore(
UID.BasicStudyContentNotificationSOPClassRetired,
iuid,
priority,
new DataWriterAdapter(scn),
tsuid,
rspHandler);
} else {
String tsuid = tc.getTransferSyntax()[0];
LOG.debug("Instance Availability Notification to {}:\n{}", aet, ian);
assoc.ncreate(UID.InstanceAvailabilityNotificationSOPClass, iuid, ian, tsuid, rspHandler);
}
assoc.waitForDimseRSP();
try {
assoc.release(true);
} catch (InterruptedException t) {
LOG.error("Association release failed! aet:" + aet, t);
}
return rspHandler.getStatus();
}
public DicomObject getAttributes(boolean cfindrsp) {
DicomObject dataset = DicomObjectUtils.decode(encodedAttributes);
if (cfindrsp) {
dataset.putInt(Tag.NumberOfSeriesRelatedInstances, VR.IS, numberOfSeriesRelatedInstances);
if (fileSetUID != null && fileSetID != null) {
dataset.putString(Tag.StorageMediaFileSetUID, VR.UI, fileSetUID);
dataset.putString(Tag.StorageMediaFileSetID, VR.SH, fileSetID);
}
if (retrieveAETs != null || externalRetrieveAET != null) {
dataset.putString(
Tag.RetrieveAETitle,
VR.AE,
externalRetrieveAET == null
? retrieveAETs
: retrieveAETs == null
? externalRetrieveAET
: retrieveAETs + '\\' + externalRetrieveAET);
}
dataset.putString(Tag.InstanceAvailability, VR.CS, availability.name());
}
return dataset;
}
public static TCEncapsulatedDocument create(
TCObject tc, MimeType mimeType, String filename, InputStream in, String description)
throws Exception {
if (mimeType == null || !DOC_TYPES.contains(mimeType.getDocumentType())) {
throw new Exception("Mime-Type is not supported (" + mimeType + ")");
}
TCReferencedInstance ref = createReferencedInstance(tc, UID.EncapsulatedPDFStorage, MODALITY);
DicomObject metaData =
TCDocumentObject.createDicomMetaData(
mimeType,
filename,
description,
ref,
tc.getPatientId(),
tc.getPatientIdIssuer(),
tc.getPatientName(),
MODALITY);
metaData.putString(Tag.TransferSyntaxUID, VR.UI, UID.ExplicitVRLittleEndian);
metaData.putString(
Tag.DocumentTitle,
VR.ST,
description != null && !description.isEmpty() ? description : getFileName(filename));
metaData.putString(Tag.MIMETypeOfEncapsulatedDocument, VR.LO, mimeType.getMimeTypeString());
metaData.putString(Tag.BurnedInAnnotation, VR.CS, "NO"); // $NON-NLS-1$
metaData.putSequence(Tag.ConceptNameCodeSequence, 0);
try {
return new TCEncapsulatedDocument(mimeType, ref, metaData, IOUtils.toByteArray(in));
} finally {
if (in != null) {
in.close();
}
}
}
private static DicomObject toDicom(BufferedImage image) throws Exception {
int numSamples = image.getColorModel().getNumComponents();
if (numSamples == 4) {
numSamples = 3;
}
String pmi = numSamples > 1 ? "RGB" : "MONOCHROME2";
int bits = image.getColorModel().getComponentSize(0);
int allocated = 8;
if (bits > 8) {
allocated = 16;
}
DicomObject attrs = new BasicDicomObject();
attrs.putString(Tag.TransferSyntaxUID, VR.UI, UID.ImplicitVRLittleEndian);
attrs.putInt(Tag.Rows, VR.US, image.getHeight());
attrs.putInt(Tag.Columns, VR.US, image.getWidth());
attrs.putInt(Tag.SamplesPerPixel, VR.US, numSamples);
attrs.putInt(Tag.BitsStored, VR.US, bits);
attrs.putInt(Tag.BitsAllocated, VR.US, allocated);
attrs.putInt(Tag.PixelRepresentation, VR.US, 0);
attrs.putString(Tag.PhotometricInterpretation, VR.CS, pmi);
if (numSamples > 1) {
attrs.putInt(Tag.PlanarConfiguration, VR.US, 0);
}
int biType =
numSamples == 3
? BufferedImage.TYPE_INT_RGB
: allocated > 8 ? BufferedImage.TYPE_USHORT_GRAY : BufferedImage.TYPE_BYTE_GRAY;
BufferedImage tmpImage = image;
if (image.getType() != biType) {
tmpImage = new BufferedImage(image.getWidth(), image.getHeight(), biType);
tmpImage.getGraphics().drawImage(image, 0, 0, null);
}
byte[] pixelData = null;
DataBuffer dataBuffer = tmpImage.getRaster().getDataBuffer();
if (dataBuffer instanceof DataBufferInt) {
final int[] data = (int[]) ((DataBufferInt) dataBuffer).getData();
pixelData = new byte[data.length * 3];
int index = 0;
for (final int i : data) {
pixelData[index++] = (byte) ((i >>> 16) & 0xFF);
pixelData[index++] = (byte) ((i >>> 8) & 0xFF);
pixelData[index++] = (byte) (i & 0xFF);
}
} else if (dataBuffer instanceof DataBufferUShort) {
final short[] data = (short[]) ((DataBufferUShort) dataBuffer).getData();
pixelData = new byte[data.length * 2];
int index = 0;
for (final int i : data) {
pixelData[index++] = (byte) ((i >>> 8) & 0xFF);
pixelData[index++] = (byte) (i & 0xFF);
}
} else if (dataBuffer instanceof DataBufferByte) {
pixelData = ((DataBufferByte) dataBuffer).getData();
}
attrs.putBytes(Tag.PixelData, allocated > 8 ? VR.OW : VR.OB, pixelData);
return attrs;
}