@Override
public void update(Observable arg0, Object arg1) {
if (arg1 instanceof String) {
String message = arg1.toString();
if (message.startsWith("Forwarding: ")) {
ForwardButton.setText("Stop Forwarding");
SetChannelButton.setEnabled(false);
BlockButton.setEnabled(false);
Send.setEnabled(false);
MessageInput.setEnabled(false);
MessageDisplay.setEnabled(false);
Availability.setEnabled(false);
} else if (message.startsWith("End Forwarding:")) {
ForwardButton.setText("Forward");
SetChannelButton.setEnabled(true);
BlockButton.setEnabled(true);
Send.setEnabled(true);
MessageInput.setEnabled(true);
MessageDisplay.setEnabled(true);
Availability.setEnabled(true);
} else if (message.startsWith("#send")) {
try {
client.sendToServer(message.substring(6));
} catch (IOException e) {
e.printStackTrace();
}
return;
} else if (message.startsWith("#linedraw")) {
drawPad.updateDraw(message);
return;
} else if (message.startsWith("Login Error:")) {
java.awt.EventQueue.invokeLater(
new Runnable() {
public void run() {
chatFrame.setVisible(false);
LoginGUI login = new LoginGUI(true);
}
});
}
if (!message.substring(message.length() - 1, message.length()).equals("\n")) message += "\n";
// Update UI display safely
final String msg = message;
SwingUtilities.invokeLater(
new Runnable() {
public void run() {
MessageDisplay.append(msg);
}
});
}
}
private void initSouth() {
listButton = new JToggleButton();
listButton.setIcon(
new javax.swing.ImageIcon(
getClass().getResource("/org/gephi/desktop/ranking/resources/list.png"))); // NOI18N
NbBundle.getMessage(RankingTopComponent.class, "RankingTopComponent.listButton.text");
listButton.setEnabled(false);
listButton.setFocusable(false);
southToolbar.add(listButton);
/*barChartButton = new JToggleButton();
barChartButton.setIcon(new javax.swing.ImageIcon(getClass().getResource("/org/gephi/desktop/ranking/resources/barchart.png"))); // NOI18N
NbBundle.getMessage(RankingTopComponent.class, "RankingTopComponent.barchartButton.text");
barChartButton.setEnabled(false);
barChartButton.setFocusable(false);
southToolbar.add(barChartButton);*/
// BarChartPanel & ListPanel
listResultPanel.setVisible(false);
listButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
model.setListVisible(listButton.isSelected());
}
});
/*barChartButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
model.setBarChartVisible(barChartButton.isSelected());
}
});*/
}
protected void makeElementsNotEditable() {
final ActionListener actionListener =
new ActionListener() {
@Override
public void actionPerformed(final ActionEvent e) {
if (e.getSource() instanceof JCheckBox) {
final JCheckBox checkbox = (JCheckBox) e.getSource();
checkbox.setSelected(!checkbox.isSelected());
}
}
};
for (final String key : new String[] {"ctnBody"}) {
final Object component = result.get(key);
if ((component != null)) {
if (component instanceof JCheckBox) {
((JCheckBox) component).addActionListener(actionListener);
} else if (component instanceof JToggleButton) {
((JToggleButton) component).setEnabled(false);
} else if (component instanceof JButton) {
((JButton) component).setEnabled(false);
} else if (component instanceof JTextComponent) {
((JTextComponent) component).setEditable(false);
}
}
}
}
public CategoryToolbar() {
// Init components
elementGroup = new javax.swing.ButtonGroup();
for (final String elmtType : AppearanceUIController.ELEMENT_CLASSES) {
JToggleButton btn = new JToggleButton();
btn.setFocusPainted(false);
String btnLabel = elmtType;
try {
btnLabel =
NbBundle.getMessage(
AppearanceToolbar.class, "AppearanceToolbar." + elmtType + ".label");
} catch (MissingResourceException e) {
}
btn.setText(btnLabel);
btn.setEnabled(false);
btn.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
controller.setSelectedElementClass(elmtType);
}
});
elementGroup.add(btn);
add(btn);
}
box = new javax.swing.JLabel();
addSeparator();
box.setMaximumSize(new java.awt.Dimension(32767, 32767));
add(box);
}
public void addSequences() {
JFileChooser choose = new JFileChooser("Add sequence(s)...");
choose.setCurrentDirectory(new File(System.getProperty("user.dir")));
if (choose.showOpenDialog(this) == JFileChooser.APPROVE_OPTION) {
inFile = choose.getSelectedFile();
// System.out.println(inFile.toString().substring(inFile.toString().length()-3,inFile.toString().length()));
if (!(inFile.toString().endsWith(".fasta") || inFile.toString().endsWith(".fas"))) {
// ErrorMessage.showPane(this, "File is not a valid Fasta file.", true);
// return;
}
FileFormatReader reader = new FastaReader();
try {
manager.inputData.seqs.alphabet = "";
manager.inputData.seqs.add(reader.read(inFile));
manager.inputgui.updateSequences();
manager.fullPath = inFile.getAbsolutePath();
if (manager.inputData.model != null) {
try {
manager.inputData.model.acceptable(manager.inputData.seqs);
} catch (RecognitionError e) {
tryModels();
}
} else {
tryModels();
}
if (manager.inputData.model != null) {
runItem.setEnabled(true);
runButton.setEnabled(true);
if (!manager.inputData.seqs.isRNA()) {
rnaButton.setEnabled(false);
} else {
rnaButton.setEnabled(true);
RNAPopup.showPane(this);
}
}
} catch (IOException e) {
ErrorMessage.showPane(this, "An I/O error occured while reading input file.", true);
} catch (ExceptionNonFasta e) {
ErrorMessage.showPane(
this, "The input sequences do not appear to be in Fasta format.", true);
}
}
}
private JToggleButton addToggleButton(Action a) {
JToggleButton tb = new JToggleButton((String) a.getValue(Action.NAME), null);
tb.setEnabled(a.isEnabled());
tb.setToolTipText((String) a.getValue(Action.SHORT_DESCRIPTION));
tb.setAction(a);
add(tb);
return tb;
}
public void syncPanel() {
if (SeaMark.EntMAP.get(dlg.panelMain.mark.getObject()) == Ent.MOORING) {
mooringButton.setBorderPainted(true);
categoryBox.setVisible(false);
mooringBox.setVisible(true);
pillarButton.setEnabled(false);
sparButton.setEnabled(false);
beaconButton.setEnabled(false);
towerButton.setEnabled(false);
stakeButton.setEnabled(false);
cairnButton.setEnabled(false);
noticeButton.setEnabled(false);
topmarkButton.setVisible(false);
for (Cat cat : moorings.keySet()) {
int item = moorings.get(cat);
if (dlg.panelMain.mark.getCategory() == cat) mooringBox.setSelectedIndex(item);
}
} else {
mooringButton.setBorderPainted(false);
mooringBox.setVisible(false);
categoryBox.setVisible(true);
pillarButton.setEnabled(true);
sparButton.setEnabled(true);
beaconButton.setEnabled(true);
towerButton.setEnabled(true);
stakeButton.setEnabled(true);
cairnButton.setEnabled(true);
noticeButton.setEnabled(true);
topmarkButton.setBorderPainted(dlg.panelMain.mark.getTopmark() != Top.NOTOP);
topmarkButton.setSelected(dlg.panelMain.mark.getTopmark() != Top.NOTOP);
topmarkButton.setVisible(dlg.panelMain.mark.testValid());
for (Cat cat : categories.keySet()) {
int item = categories.get(cat);
if (dlg.panelMain.mark.getCategory() == cat) categoryBox.setSelectedIndex(item);
}
}
for (Shp shp : shapes.keySet()) {
JRadioButton button = shapes.get(shp);
if (dlg.panelMain.mark.getShape() == shp) {
button.setBorderPainted(true);
} else button.setBorderPainted(false);
}
noticeButton.setBorderPainted(false);
dlg.panelMain.mark.testValid();
}
private void refreshEnable() {
boolean modelEnabled = isModelEnabled();
// barChartButton.setEnabled(modelEnabled);
listButton.setEnabled(modelEnabled);
rankingChooser.setEnabled(modelEnabled);
rankingToolbar.setEnabled(modelEnabled);
listResultPanel.setEnabled(modelEnabled);
}
protected void enableEdition(boolean enable) {
importmi.setEnabled(enable);
savemi.setEnabled(enable);
sizesl.setEnabled(enable);
sizetf.setEnabled(enable);
colorbt.setEnabled(enable);
resetbt.setEnabled(enable);
savebt.setEnabled(enable);
eraserbt.setEnabled(enable);
}
/**
* Enable or disable various UI elements
*
* @param enable
*/
private void enableSettingsMode(boolean enable) {
textFieldStepsize.setEnabled(enable);
btnStepToMarker.setEnabled(enable);
btnStep.setEnabled(enable);
slider.setEnabled(enable);
textFieldDistFallofExp.setEnabled(enable);
textFieldTriDissimilarity.setEnabled(enable);
textFieldMinTriAngle.setEnabled(enable);
textFieldBadTriPen.setEnabled(enable);
btnDisplayTriangles.setEnabled(enable);
btnRefresh.setEnabled(enable);
tglbtnMouseMode.setEnabled(enable);
}
/** Open button has been pushed, create the actual display connection */
void openPortButtonActionPerformed(java.awt.event.ActionEvent e) {
log.info("Open button pushed");
// can't change this anymore
openPortButton.setEnabled(false);
portBox.setEnabled(false);
// Open the port
openPort((String) portBox.getSelectedItem(), "JMRI");
// start the reader
readerThread = new Thread(new Reader());
readerThread.start();
// enable buttons
checkButton.setEnabled(true);
log.info("Open button processing complete");
}
public void setEnabled(boolean bEnable) {
super.setEnabled(bEnable);
btnDraw.setEnabled(bEnable);
btnPen.setEnabled(bEnable);
btnCalibrate.setEnabled(bEnable);
btnSpline.setEnabled(bEnable);
btnTextTool.setEnabled(bEnable);
btnRulerTool.setEnabled(bEnable);
}
public void disableAllButtons() {
openItem.setEnabled(false);
openButton.setEnabled(false);
runItem.setEnabled(false);
runButton.setEnabled(false);
pauseItem.setEnabled(true);
pauseButton.setEnabled(true);
resumeItem.setEnabled(false);
stopItem.setEnabled(true);
stopButton.setEnabled(true);
rnaButton.setEnabled(false);
}
@Override
public void actionPerformed(ActionEvent e) {
if (e.getSource().equals(rt)) {
view.onUserEvent("rt", tweet);
JToggleButton b = (JToggleButton) rt;
b.setEnabled(false);
} else if (e.getSource().equals(fav)) {
JToggleButton b = (JToggleButton) fav;
if (b.isSelected()) {
view.onUserEvent("fav", tweet);
} else {
view.onUserEvent("unfav", tweet);
}
} else if (e.getSource().equals(rep)) {
view.onUserEvent("reply", tweet);
}
}
/** Enables several menu items that were kept disabled during the run. */
public void finished() {
openItem.setEnabled(true);
openButton.setEnabled(true);
runItem.setEnabled(true);
runButton.setEnabled(true);
rnaButton.setEnabled(true);
// rnaButton.setSelected(false);
pauseItem.setEnabled(false);
pauseButton.setEnabled(false);
resumeItem.setEnabled(false);
resumeButton.setEnabled(false);
stopItem.setEnabled(false);
stopButton.setEnabled(false);
statusText.setText(MainFrame.IDLE_STATUS_MESSAGE);
// SavedFilesPopup.showPane(this);
}
public void deactivateRNA() {
int count = 0;
if (manager.postProcMan.rnaMode) {
for (Postprocess plugin : pluginTabs) {
if (plugin.rnaAssociated) {
plugin.reloadPanel();
tabPluginMap.remove(plugin);
tab.remove(count + 1);
count--;
}
count++;
}
}
manager.postProcMan.rnaMode = false;
rnaButton.setSelected(false);
rnaButton.setEnabled(false);
}
JToggleButton addDecoderIdentButton() {
JToggleButton iddecoder = new JToggleButton(Bundle.getMessage("ButtonReadType"));
iddecoder.setToolTipText(Bundle.getMessage("TipSelectType"));
if (jmri.InstanceManager.getNullableDefault(jmri.ProgrammerManager.class) != null
&& jmri.InstanceManager.getDefault(jmri.ProgrammerManager.class).getGlobalProgrammer()
!= null
&& !jmri.InstanceManager.getDefault(jmri.ProgrammerManager.class)
.getGlobalProgrammer()
.getCanRead()) {
// can't read, disable the button
iddecoder.setEnabled(false);
iddecoder.setToolTipText(Bundle.getMessage("TipNoRead"));
}
iddecoder.addActionListener(
new ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
startIdentifyDecoder();
}
});
return iddecoder;
}
public void initComponents(NceSystemConnectionMemo m) throws Exception {
this.memo = m;
// populate the GUI, invoked as part of startup
// load the port selection part
portBox.setToolTipText("Select the port to use");
portBox.setAlignmentX(JLabel.LEFT_ALIGNMENT);
Vector<String> v = getPortNames();
for (int i = 0; i < v.size(); i++) {
portBox.addItem(v.elementAt(i));
}
openPortButton.setText("Open");
openPortButton.setToolTipText("Configure program to use selected port");
openPortButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
try {
openPortButtonActionPerformed(evt);
// } catch (jmri.jmrix.SerialConfigException ex) {
// log.error("Error while opening port. Did you select the right one?\n"+ex);
} catch (java.lang.UnsatisfiedLinkError ex) {
log.error("Error while opening port. Did you select the right one?\n" + ex);
}
}
});
{
JSeparator js = new JSeparator();
js.setMaximumSize(new Dimension(10000, 10));
add(js);
}
JPanel p1 = new JPanel();
p1.setLayout(new FlowLayout());
p1.add(new JLabel("Serial port: "));
p1.add(portBox);
p1.add(openPortButton);
p1.setMaximumSize(p1.getPreferredSize());
add(p1);
// add user part of GUI
{
JSeparator js = new JSeparator();
js.setMaximumSize(new Dimension(10000, 10));
add(js);
}
JPanel p2 = new JPanel();
{
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
checkButton.setToolTipText("?");
checkButton.setEnabled(false);
p.add(checkButton);
checkButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
if (checkButton.isSelected()) {
sendBytes(new byte[] {(byte) '?'});
checkButton.setText("Res.");
checkButton.setToolTipText("Resume packet monitoring");
} else {
sendBytes(new byte[] {(byte) ' '});
checkButton.setText("Info");
checkButton.setToolTipText("?");
}
}
});
truncateCheckBox.setToolTipText("Check this box to suppress identical packets");
p.add(truncateCheckBox);
p2.add(p);
}
{
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
ButtonGroup g = new ButtonGroup();
JRadioButton b;
b = new JRadioButton("Verbose");
b.setToolTipText("V");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'V'});
}
});
b = new JRadioButton("Hex with preamble symbol");
b.setToolTipText("H0");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'H', (byte) '0'});
}
});
p2.add(p);
b = new JRadioButton("(as above with spaces)");
b.setToolTipText("H1");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'H', (byte) '1'});
}
});
p2.add(p);
b = new JRadioButton("Hex without preamble symbol");
b.setToolTipText("H2");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'H', (byte) '2'});
}
});
p2.add(p);
b = new JRadioButton("(as above with spaces)");
b.setToolTipText("H3");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'H', (byte) '3'});
}
});
p2.add(p);
b = new JRadioButton("Hex with preamble count in hex");
b.setToolTipText("H4");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'H', (byte) '4'});
}
});
p2.add(p);
b = new JRadioButton("(as above with spaces)");
b.setToolTipText("H5");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'H', (byte) '5'});
}
});
p2.add(p);
} // end hex/verbose group
{ // start acc off/on
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
ButtonGroup g = new ButtonGroup();
JRadioButton b;
b = new JRadioButton("Hide acc packets");
b.setToolTipText("A-");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'A', (byte) '-'});
}
});
b = new JRadioButton("Show acc packets");
b.setToolTipText("A+");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'A', (byte) '+'});
}
});
p2.add(p);
} // end acc off/on
{ // start idle off/on
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
ButtonGroup g = new ButtonGroup();
JRadioButton b;
b = new JRadioButton("Hide idle packets");
b.setToolTipText("I-");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'I', (byte) '-'});
}
});
b = new JRadioButton("Show idle packets");
b.setToolTipText("I+");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'I', (byte) '+'});
}
});
p2.add(p);
} // end idle off/on
{ // start loco off/on
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
ButtonGroup g = new ButtonGroup();
JRadioButton b;
locoSpeedButton.setToolTipText("L-");
g.add(locoSpeedButton);
p.add(locoSpeedButton);
locoSpeedButton.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'L', (byte) '-'});
}
});
b = new JRadioButton("Show loco packets");
b.setToolTipText("L+");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'L', (byte) '+'});
}
});
p2.add(p);
} // end loco off/on
{ // start reset off/on
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
ButtonGroup g = new ButtonGroup();
JRadioButton b;
b = new JRadioButton("Hide reset packets");
b.setToolTipText("R-");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'R', (byte) '-'});
}
});
b = new JRadioButton("Show reset packets");
b.setToolTipText("R+");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'R', (byte) '+'});
}
});
p2.add(p);
} // end reset off/on
{ // start signal on/off
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
ButtonGroup g = new ButtonGroup();
JRadioButton b;
b = new JRadioButton("Hide signal packets");
b.setToolTipText("S-");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'S', (byte) '-'});
}
});
b = new JRadioButton("Show signal packets");
b.setToolTipText("S+");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'S', (byte) '+'});
}
});
p2.add(p);
} // end signal off/on
{ // Monitor command acc single/double
JPanel p = new JPanel();
p.setLayout(new BoxLayout(p, BoxLayout.Y_AXIS));
JLabel t = new JLabel("Monitor Command");
p.add(t);
ButtonGroup g = new ButtonGroup();
JRadioButton b;
b = new JRadioButton("Acc addresses single");
b.setToolTipText("AS");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'A', (byte) 'S'});
}
});
b = new JRadioButton("Acc addresses paired");
b.setToolTipText("AP");
g.add(b);
p.add(b);
b.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
sendBytes(new byte[] {(byte) 'A', (byte) 'P'});
}
});
p2.add(p);
} // end acc single/double
p2.setMaximumSize(p2.getPreferredSize());
JScrollPane ps = new JScrollPane(p2);
ps.setMaximumSize(ps.getPreferredSize());
ps.setVisible(true);
add(ps);
}
public void enablePolygonButton(boolean enable) {
if (polygonButton != null) {
polygonButton.setEnabled(enable);
}
}
public ToolBox(final MainFrame mf) {
JPanel container = new JPanel();
container.setBackground(new Color(0xF2F2F5));
add(container);
container.setLayout(new GridLayout(0, 3, 3, 3));
setBackground(new Color(0xF2F2F5));
ButtonGroup group = new ButtonGroup();
for (int i = 0; i < 7; i++) {
JToggleButton btn = new JToggleButton();
buttons.add(btn);
btn.setPreferredSize(new Dimension(35, 35));
btn.setMinimumSize(new Dimension(35, 35));
btn.setMaximumSize(new Dimension(35, 35));
group.add(btn);
container.add(btn);
}
final JToggleButton jButtonSelect = buttons.get(0);
jButtonSelect.setIcon(new ImageIcon(getClass().getResource("icons/tool-select.png")));
jButtonSelect.setEnabled(true);
jButtonSelect.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(SelectCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.CROSSHAIR_CURSOR));
}
});
final JToggleButton jButtonMove = buttons.get(1);
jButtonMove.setIcon(new ImageIcon(getClass().getResource("icons/tool-move.png")));
jButtonMove.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(MoveCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.MOVE_CURSOR));
}
});
final JToggleButton jButtonZoom = buttons.get(2);
jButtonZoom.setIcon(new ImageIcon(getClass().getResource("icons/tool-zoom.png")));
jButtonZoom.setEnabled(true);
jButtonZoom.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(ZoomCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.N_RESIZE_CURSOR));
}
});
final JToggleButton jButtonPaint = buttons.get(3);
jButtonPaint.setIcon(new ImageIcon(getClass().getResource("icons/tool-paint.png")));
jButtonPaint.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(PaintCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.HAND_CURSOR));
}
});
jButtonPaint.doClick();
final JToggleButton jButtonFill = buttons.get(4);
jButtonFill.setIcon(new ImageIcon(getClass().getResource("icons/tool-fill.png")));
jButtonFill.setEnabled(true);
jButtonFill.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(FillSelectionCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.MOVE_CURSOR));
}
});
final JToggleButton jButtonErase = buttons.get(5);
jButtonErase.setIcon(new ImageIcon(getClass().getResource("icons/tool-erase.png")));
jButtonErase.setEnabled(true);
jButtonErase.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(EraseCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.CROSSHAIR_CURSOR));
}
});
final JToggleButton jButtonPick = buttons.get(6);
jButtonPick.setIcon(new ImageIcon(getClass().getResource("icons/tool-pick.png")));
jButtonPick.setEnabled(true);
jButtonPick.addActionListener(
new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent e) {
mf.setActiveTool(PickCommand.class);
mf.getShowcase().setCursor(new Cursor(Cursor.CROSSHAIR_CURSOR));
}
});
}
/** The only constructor of the class. It launches the main window. */
@SuppressWarnings("unchecked")
public MainFrame() throws Exception {
super("StatAlign " + StatAlign.version);
try {
String syslook = UIManager.getSystemLookAndFeelClassName();
if (!UIManager.getLookAndFeel().getClass().getName().equals(syslook)) {
UIManager.setLookAndFeel(syslook);
SwingUtilities.updateComponentTreeUI(this);
}
} catch (Exception ex) {
JOptionPane.showMessageDialog(this, ex);
}
ArrayList<Class<?>> substModList = new ArrayList<Class<?>>();
for (String model :
Utils.classesInPackage(SubstitutionModel.class.getPackage().getName() + ".plugins")) {
try {
Class<?> cl = Class.forName(model);
/* Only include non-abstract substitution models that extend SubstitutionModel */
if (!Modifier.isAbstract(cl.getModifiers()) && SubstitutionModel.class.isAssignableFrom(cl))
substModList.add(cl);
} catch (Exception ex) {
}
}
substModels =
(Class<? extends SubstitutionModel>[])
substModList.toArray(new Class<?>[substModList.size()]);
manager = new MainManager(this);
mcmcSettingsDlg = new McmcSettingsDlg(this);
setMinimumSize(new Dimension(500, 250));
///
/// Creates the MenuBar and the ToolBar
///
toolBar = new JToolBar();
toolBar.setFloatable(false);
toolBar.setRollover(true);
JMenuBar menubar = new JMenuBar();
JMenu menu = new JMenu("File");
menu.setMnemonic(KeyEvent.VK_F);
JMenuItem item;
String openText = "Add sequence(s)...";
ImageIcon icon = new ImageIcon(ClassLoader.getSystemResource("icons/open.png"));
openItem = createMenuItem(openText, true);
openItem.setAccelerator(KeyStroke.getKeyStroke("control O"));
openItem.setMnemonic(KeyEvent.VK_A);
openItem.setIcon(icon);
menu.add(openItem);
openButton = createButton(icon, "Add sequence(s)...");
toolBar.add(openButton);
toolBar.addSeparator();
JMenuItem ioPreferencesItem = createMenuItem("Preferences...", true);
ioPreferencesItem.setAccelerator(KeyStroke.getKeyStroke("control 1"));
ioPreferencesItem.setMnemonic(KeyEvent.VK_P);
menu.add(ioPreferencesItem);
menu.addSeparator();
item = createMenuItem("Exit", true);
item.setAccelerator(KeyStroke.getKeyStroke("alt F4"));
item.setMnemonic(KeyEvent.VK_X);
menu.add(item);
menubar.add(menu);
// menu = new JMenu("Edit");
// menu.setMnemonic(KeyEvent.VK_E);
// item = new JMenuItem("Cut");
// item.addActionListener(this);
// item.setAccelerator(KeyStroke.getKeyStroke("control X"));
// menu.add(item);
// item = new JMenuItem("Copy");
// item.addActionListener(this);
// item.setAccelerator(KeyStroke.getKeyStroke("control C"));
// menu.add(item);
// item = new JMenuItem("Paste");
// item.addActionListener(this);
// item.setAccelerator(KeyStroke.getKeyStroke("control V"));
// menu.add(item);
// menubar.add(menu);
menu = new JMenu("Analysis");
menu.setMnemonic(KeyEvent.VK_M);
// item = createMenuItem("Settings", true);
// item.setAccelerator(KeyStroke.getKeyStroke("control M"));
// item.setMnemonic(KeyEvent.VK_S);
// menu.add(item);
String runText = "Set up and run";
icon = new ImageIcon(ClassLoader.getSystemResource("icons/play.png"));
runItem = createMenuItem(runText, false);
runItem.setAccelerator(KeyStroke.getKeyStroke("control ENTER"));
runItem.setIcon(icon);
menu.add(runItem);
menu.addSeparator();
runButton = createButton(icon, runText);
runButton.setEnabled(false);
toolBar.add(runButton);
String pauseText = "Pause";
icon = new ImageIcon(ClassLoader.getSystemResource("icons/pause.png"));
pauseItem = createMenuItem("Pause", false);
pauseItem.setIcon(icon);
menu.add(pauseItem);
pauseButton = createButton(icon, pauseText);
pauseButton.setEnabled(false);
toolBar.add(pauseButton);
String resumeText = "Resume";
icon = new ImageIcon(ClassLoader.getSystemResource("icons/resume.png"));
resumeItem = createMenuItem(resumeText, false);
resumeItem.setIcon(icon);
menu.add(resumeItem);
resumeButton = createButton(icon, resumeText);
resumeButton.setEnabled(false);
toolBar.add(resumeButton);
String stopText = "Stop";
icon = new ImageIcon(ClassLoader.getSystemResource("icons/stop.png"));
stopItem = createMenuItem("Stop", false);
stopItem.setIcon(icon);
menu.add(stopItem);
menubar.add(menu);
stopButton = createButton(icon, stopText);
stopButton.setEnabled(false);
toolBar.add(stopButton);
String rnaText = "RNA mode";
rnaButton =
createToggleButton(new ImageIcon(ClassLoader.getSystemResource("icons/rna1.png")), rnaText);
rnaButton.setEnabled(false);
rnaButton.setSelected(false);
toolBar.add(rnaButton);
// String settingsText = "Settings";
// JButton settingsButton = createButton(new ImageIcon(ClassLoader.
// getSystemResource("icons/settings.png")), settingsText);
// toolBar.add(settingsButton);
menu = new JMenu("Model");
menu.setMnemonic(KeyEvent.VK_L);
modelButtons = new JMenuItem[substModels.length];
ButtonGroup modelGroup = new ButtonGroup();
HashMap<String, ArrayList<Class<? extends SubstitutionModel>>> substModTypes =
new HashMap<String, ArrayList<Class<? extends SubstitutionModel>>>();
for (Class<? extends SubstitutionModel> cl : substModels) {
String type = SubstitutionModel.getType(cl);
ArrayList<Class<? extends SubstitutionModel>> arr = substModTypes.get(type);
if (arr == null)
substModTypes.put(type, arr = new ArrayList<Class<? extends SubstitutionModel>>());
arr.add(cl);
}
String[] typeArr = new String[substModTypes.keySet().size()];
int s = 0;
if (typeArr.length >= 2) {
typeArr[0] = "protein"; // amino acid subst models first
typeArr[1] = "nucleotide"; // then nucleotide models, then the rest
s = 2;
}
for (String type : substModTypes.keySet()) {
if (!type.equals("protein") && !type.equals("nucleotide")) typeArr[s++] = type;
}
s = 0;
for (String type : typeArr) {
if (s > 0) menu.addSeparator();
for (Class<? extends SubstitutionModel> cl : substModTypes.get(type)) {
String name = SubstitutionModel.getMenuName(cl);
item = new JRadioButtonMenuItem(name);
item.addActionListener(this);
modelButtons[s++] = item;
modelGroup.add(item);
menu.add(item);
}
}
modelGroup.clearSelection();
menubar.add(menu);
/*menu = new JMenu("View");
menu.setMnemonic(KeyEvent.VK_V);
JMenuItem zoomInItem = new JMenuItem("Zoom in");
zoomInItem.setEnabled(false);
zoomInItem.addActionListener(this);
menu.add(zoomInItem);
JMenuItem zoomOutItem = new JMenuItem("Zoom out");
zoomOutItem.setEnabled(false);
zoomOutItem.addActionListener(this);
menu.add(zoomOutItem);
JMenuItem autofitItem = new JMenuItem("Fit to frame");
autofitItem.setEnabled(false);
autofitItem.addActionListener(this);
menu.add(autofitItem);
menubar.add(menu);*/
menu = new JMenu("Help");
menu.setMnemonic(KeyEvent.VK_H);
item = new JMenuItem("About...");
item.addActionListener(this);
menu.add(item);
menu.addSeparator();
item = new JMenuItem("Help for users");
item.addActionListener(this);
menu.add(item);
menu.addSeparator();
item = new JMenuItem("Html doc for developers");
item.addActionListener(this);
menu.add(item);
item = new JMenuItem("Description of plugins");
item.addActionListener(this);
menu.add(item);
menubar.add(menu);
setJMenuBar(menubar);
add(toolBar, BorderLayout.PAGE_START);
///
/// Creates the main panel
///
Container cp = getContentPane();
JPanel mainPanel = new JPanel(new BorderLayout());
Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
mainPanel.setMinimumSize(new Dimension(screenSize.width / 3, screenSize.height / 3));
mainPanel.setMaximumSize(new Dimension(screenSize.width, screenSize.height));
mainPanel.setPreferredSize(new Dimension(screenSize.width / 2, screenSize.height / 2));
tab = new JTabbedPane();
input = new Input(manager);
tab.addTab(input.getTabName(), input.getIcon(), input.getJPanel(), input.getTip());
manager.inputgui = input.inputgui;
// Sorts the tab according to their getTabOrder()
pluginTabs = manager.postProcMan.plugins.clone();
Arrays.sort(
pluginTabs,
new Comparator<Postprocess>() {
@Override
public int compare(Postprocess firstTab, Postprocess secondTab) {
return Double.compare(firstTab.getTabOrder(), secondTab.getTabOrder());
}
});
tabPluginMap = new HashMap<Integer, Postprocess>();
for (int i = 0; i < pluginTabs.length; i++) {
Postprocess plugin = pluginTabs[i];
if (plugin.selected && !plugin.rnaAssociated) {
tabPluginMap.put(i + 1, plugin); // TODO: Jesus Java, horrible.
tab.addTab(plugin.getTabName(), plugin.getIcon(), plugin.getJPanel(), plugin.getTip());
}
}
tab.addChangeListener(
new ChangeListener() {
@Override
public void stateChanged(ChangeEvent changeEvent) {
JTabbedPane pane = (JTabbedPane) changeEvent.getSource();
Integer i = pane.getSelectedIndex();
// Remove the last tabs toolbar items.
if (lastSelectedTabIndex != -1) {
Postprocess lastPlugin = tabPluginMap.get(lastSelectedTabIndex);
if (lastPlugin != null && lastPlugin.hasToolBar) {
for (JComponent item : lastPlugin.getToolBarItems()) {
toolBar.remove(item);
}
toolBar.revalidate(); // TODO: optimize.
toolBar.repaint();
}
}
// Add the currents tab toolbar items.
Postprocess plugin = tabPluginMap.get(i);
if (plugin != null && plugin.hasToolBar) {
for (JComponent item : plugin.getToolBarItems()) {
toolBar.add(item);
}
toolBar.revalidate();
toolBar.repaint();
}
lastSelectedTabIndex = i;
}
});
mainPanel.add(tab, BorderLayout.CENTER);
cp.add(mainPanel, BorderLayout.CENTER);
JPanel statusBar = new JPanel(new BorderLayout());
statusText = new JLabel(IDLE_STATUS_MESSAGE);
statusBar.add(statusText, BorderLayout.CENTER);
cp.add(statusBar, BorderLayout.SOUTH);
// setSize(300, 200);
// setLocationByPlatform(true);
// setLocation(screenSize.width/4,screenSize.height/4);
pack();
setBounds(
screenSize.width / 5 - 15,
screenSize.height / 5 - 15,
screenSize.width * 3 / 5 + 30,
screenSize.height * 3 / 5 + 30);
setVisible(true);
setDefaultCloseOperation(EXIT_ON_CLOSE);
}
void setCardEnabled(DevCardType cardType, boolean enabled) {
JToggleButton button = devCards.get(cardType);
button.setEnabled(enabled);
}
/**
* Wird aufgerufen, wenn ein FSM-Programm gestartet bzw. gestoppt wird. Während einer
* Programm-Ausführung sollte das Programm nicht verändert werden können (locked == true)
*/
public void setLocked(boolean locked) {
if (locked) {
this.setEnabled(false);
this.automataPanel.setLocked(true);
editMode.setEnabled(false);
deleteMode.setEnabled(false);
createState.setEnabled(false);
markStartState.setEnabled(false);
markFinalState.setEnabled(false);
createTransistion.setEnabled(false);
createComment.setEnabled(false);
zoomIn.setEnabled(false);
zoomOut.setEnabled(false);
layout.setEnabled(false);
nondeterministic.setEnabled(false);
deterministic.setEnabled(false);
} else {
this.setEnabled(true);
this.automataPanel.setLocked(false);
editMode.setEnabled(true);
deleteMode.setEnabled(true);
createState.setEnabled(true);
markStartState.setEnabled(true);
markFinalState.setEnabled(true);
createTransistion.setEnabled(true);
createComment.setEnabled(true);
zoomIn.setEnabled(true);
zoomOut.setEnabled(true);
layout.setEnabled(true);
nondeterministic.setEnabled(true);
deterministic.setEnabled(true);
}
}
