public static void update() {
try {
final String msg = "DatabaseSchemaUpdater: Begin";
log(msg);
final String applicationName = CommonServiceLocator.getInstance().getAppName();
DAO dao = DAOConfigFactory.getInstance().getDAOFactory(applicationName).getDAO();
Method getConnectionManagerMethod =
ReflectionUtils.findMethod(dao.getClass(), "getConnectionManager");
ReflectionUtils.makeAccessible(getConnectionManagerMethod);
IConnectionManager connectionManager =
(IConnectionManager) ReflectionUtils.invokeMethod(getConnectionManagerMethod, dao);
Connection c = null;
try {
c = connectionManager.getConnection();
update(c);
} finally {
try {
connectionManager.commit();
} catch (Exception e) {
}
connectionManager.closeConnection();
}
} catch (Exception e) {
final String msg = "DatabaseSchemaUpdater: Failed with " + e.getMessage();
log(msg);
}
}
/**
* This method validate timestamptime value.
*
* @param enteredValue entered Value.
* @param errors errors.
* @return conditionError boolean value.
*/
public boolean validate(String enteredValue, ActionErrors errors) {
Validator validator = new Validator();
boolean conditionError = false;
if (!(validator.isValidTime(
enteredValue, CommonServiceLocator.getInstance().getTimePattern()))) {
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("simpleQuery.time.format"));
conditionError = true;
}
return conditionError;
}
/**
* @param path path.
* @throws Exception Exception
*/
public static void init(String path) throws Exception {
try {
final String absolutePath =
CommonServiceLocator.getInstance().getPropDirPath() + File.separator + path;
final InputStream inpurStream = new FileInputStream(new File(absolutePath));
printimplClassProperties = new Properties();
printimplClassProperties.load(inpurStream);
/*printimplClassProperties = new Properties();
printimplClassProperties.
load(PropertyHandler.class.getClassLoader().getResourceAsStream(path));*/
} catch (final Exception e) {
PropertyHandler.logger.error(e.getMessage(), e);
}
}
private void createSCGUnderCPHavingScientistAsPI() {
try {
CollectionProtocol cp = new CollectionProtocol();
cp.setId(new Long(BizTestCaseUtility.CP_WITH_SCIENTIST_AS_PI));
Participant participant = BaseTestCaseUtility.initParticipant();
participant.setSocialSecurityNumber("111-22-3233");
try {
participant.setBirthDate(
Utility.parseDate("05-02-1984", CommonServiceLocator.getInstance().getDatePattern()));
} catch (ParseException e) {
Logger.out.debug("" + e);
}
System.out.println("Participant" + participant);
SessionDataBean bean = (SessionDataBean) getSession().getAttribute("sessionData");
try {
participant = (Participant) appService.createObject(participant);
} catch (Exception e) {
e.printStackTrace();
assertFalse(e.getMessage(), true);
}
BizTestCaseUtility.setNameObjectMap("ParticipantWithScientistAsPI", participant);
CollectionProtocolRegistration collectionProtocolRegistration =
new CollectionProtocolRegistration();
collectionProtocolRegistration.setCollectionProtocol(cp);
collectionProtocolRegistration.setParticipant(participant);
collectionProtocolRegistration.setProtocolParticipantIdentifier("");
collectionProtocolRegistration.setActivityStatus("Active");
try {
collectionProtocolRegistration.setRegistrationDate(
Utility.parseDate("08/15/2006", Utility.datePattern("08/15/2006")));
collectionProtocolRegistration.setConsentSignatureDate(
Utility.parseDate("11/23/2006", Utility.datePattern("11/23/2006")));
System.out.println("Creating CPR");
} catch (ParseException e) {
e.printStackTrace();
}
collectionProtocolRegistration.setSignedConsentDocumentURL("F:/doc/consentDoc.doc");
User user = new User();
user.setId(new Long(1));
collectionProtocolRegistration.setConsentWitness(user);
// Collection consentTierResponseCollection = new LinkedHashSet();
// Collection consentTierCollection = new LinkedHashSet();
//
// consentTierCollection = cp.getConsentTierCollection();
// System.out.println("Creating CPR");
// Iterator consentTierItr = consentTierCollection.iterator();
// System.out.println("Creating CPR");
// while(consentTierItr.hasNext())
// {
// ConsentTier consent= (ConsentTier) consentTierItr.next();
// ConsentTierResponse response= new ConsentTierResponse();
// response.setResponse("Yes");
// response.setConsentTier(consent);
// consentTierResponseCollection.add(response);
// }
//
//
// collectionProtocolRegistration.setConsentTierResponseCollection(consentTierResponseCollection);
try {
collectionProtocolRegistration =
(CollectionProtocolRegistration)
appService.createObject(collectionProtocolRegistration);
} catch (Exception e) {
Logger.out.error(e.getMessage(), e);
e.printStackTrace();
assertFalse(e.getMessage(), true);
}
BizTestCaseUtility.setNameObjectMap("CPRWithScientistAsPI", collectionProtocolRegistration);
SpecimenCollectionGroup scg = new SpecimenCollectionGroup();
scg = (SpecimenCollectionGroup) BaseTestCaseUtility.createSCG(collectionProtocolRegistration);
Site site = new Site();
site.setId(new Long(BizTestCaseUtility.CP_WITH_ALLOW_READ_PRIV));
scg.setSpecimenCollectionSite(site);
scg.setName("New SCG" + UniqueKeyGeneratorUtil.getUniqueKey());
scg = (SpecimenCollectionGroup) BaseTestCaseUtility.setEventParameters(scg);
scg.setSurgicalPathologyNumber("SPN" + UniqueKeyGeneratorUtil.getUniqueKey());
System.out.println("Creating SCG");
try {
scg = (SpecimenCollectionGroup) appService.createObject(scg);
System.out.println("SCG::" + scg.getName());
} catch (Exception e) {
Logger.out.error(e.getMessage(), e);
e.printStackTrace();
assertFalse(e.getMessage(), true);
}
IdentifiedSurgicalPathologyReport identifiedSurgicalPathologyReport =
new IdentifiedSurgicalPathologyReport();
identifiedSurgicalPathologyReport.setActivityStatus(Status.ACTIVITY_STATUS_ACTIVE.toString());
identifiedSurgicalPathologyReport.setCollectionDateTime(new Date());
identifiedSurgicalPathologyReport.setIsFlagForReview(new Boolean(false));
identifiedSurgicalPathologyReport.setReportStatus(CaTIESConstants.PENDING_FOR_DEID);
identifiedSurgicalPathologyReport.setReportSource(site);
TextContent textContent = new TextContent();
String data =
"[FINAL DIAGNOSIS]\n"
+ "This is the Final Diagnosis Text"
+ "\n\n[GROSS DESCRIPTION]"
+ "The specimen is received unfixed labeled hernia sac and consists of a soft, pink to yellow segment of fibrous and fatty tissue measuring 7.5cm in length x 3.2 x 0.9cm with a partly defined lumen. Representative tissue submitted labeled 1A.";
textContent.setData(data);
textContent.setSurgicalPathologyReport(identifiedSurgicalPathologyReport);
Set reportSectionCollection = new HashSet();
ReportSection reportSection1 = new ReportSection();
reportSection1.setName("GDT");
reportSection1.setDocumentFragment(
"The specimen is received unfixed labeled hernia sac and consists of a soft, pink to yellow segment of fibrous and fatty tissue measuring 7.5cm in length x 3.2 x 0.9cm with a partly defined lumen. Representative tissue submitted labeled 1A.");
reportSection1.setTextContent(textContent);
ReportSection reportSection2 = new ReportSection();
reportSection2.setName("FIN");
reportSection2.setDocumentFragment("This is the Final Diagnosis Text");
reportSection2.setTextContent(textContent);
reportSectionCollection.add(reportSection1);
reportSectionCollection.add(reportSection2);
textContent.setReportSectionCollection(reportSectionCollection);
identifiedSurgicalPathologyReport.setTextContent(textContent);
identifiedSurgicalPathologyReport.setSpecimenCollectionGroup(scg);
scg.setSurgicalPathologyNumber("SPN" + UniqueKeyGeneratorUtil.getUniqueKey());
try {
identifiedSurgicalPathologyReport =
(IdentifiedSurgicalPathologyReport)
appService.createObject(identifiedSurgicalPathologyReport);
} catch (Exception e) {
Logger.out.error(e.getMessage(), e);
e.printStackTrace();
assertFalse(e.getMessage(), true);
}
BizTestCaseUtility.setObjectMap(
identifiedSurgicalPathologyReport, IdentifiedSurgicalPathologyReport.class);
BizTestCaseUtility.setNameObjectMap("SCGWithScientistAsPI", scg);
// TissueSpecimen specimenObj = (TissueSpecimen) BaseTestCaseUtility.initTissueSpecimen();
// specimenObj.setSpecimenCollectionGroup(scg);
// StorageContainer sc = new StorageContainer();
// sc.setId(new Long(1));
// specimenObj.setStorageContainer(sc);
// specimenObj.setPositionDimensionOne(new Integer(3));
// specimenObj.setPositionDimensionTwo(new Integer(1));
// try{
// specimenObj = (TissueSpecimen) appService.createObject(specimenObj);
// System.out.println("Mol Specimen:"+ specimenObj.getLabel());
// }
// catch(Exception e){
// Logger.out.error(e.getMessage(),e);
// e.printStackTrace();
// assertFalse("Failed to register participant", true);
// }
} catch (Exception e) {
Logger.out.error(e.getMessage(), e);
e.printStackTrace();
assertFalse(e.getMessage(), true);
}
}
