public static void update() {

    try {
      final String msg = "DatabaseSchemaUpdater: Begin";
      log(msg);

      final String applicationName = CommonServiceLocator.getInstance().getAppName();
      DAO dao = DAOConfigFactory.getInstance().getDAOFactory(applicationName).getDAO();
      Method getConnectionManagerMethod =
          ReflectionUtils.findMethod(dao.getClass(), "getConnectionManager");
      ReflectionUtils.makeAccessible(getConnectionManagerMethod);
      IConnectionManager connectionManager =
          (IConnectionManager) ReflectionUtils.invokeMethod(getConnectionManagerMethod, dao);

      Connection c = null;
      try {
        c = connectionManager.getConnection();
        update(c);
      } finally {
        try {
          connectionManager.commit();
        } catch (Exception e) {
        }
        connectionManager.closeConnection();
      }

    } catch (Exception e) {
      final String msg = "DatabaseSchemaUpdater: Failed with " + e.getMessage();
      log(msg);
    }
  }
 /**
  * This method validate timestamptime value.
  *
  * @param enteredValue entered Value.
  * @param errors errors.
  * @return conditionError boolean value.
  */
 public boolean validate(String enteredValue, ActionErrors errors) {
   Validator validator = new Validator();
   boolean conditionError = false;
   if (!(validator.isValidTime(
       enteredValue, CommonServiceLocator.getInstance().getTimePattern()))) {
     errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("simpleQuery.time.format"));
     conditionError = true;
   }
   return conditionError;
 }
Example #3
0
  /**
   * @param path path.
   * @throws Exception Exception
   */
  public static void init(String path) throws Exception {
    try {
      final String absolutePath =
          CommonServiceLocator.getInstance().getPropDirPath() + File.separator + path;
      final InputStream inpurStream = new FileInputStream(new File(absolutePath));
      printimplClassProperties = new Properties();
      printimplClassProperties.load(inpurStream);

      /*printimplClassProperties = new Properties();
      printimplClassProperties.
      load(PropertyHandler.class.getClassLoader().getResourceAsStream(path));*/

    } catch (final Exception e) {
      PropertyHandler.logger.error(e.getMessage(), e);
    }
  }
Example #4
0
  private void createSCGUnderCPHavingScientistAsPI() {
    try {
      CollectionProtocol cp = new CollectionProtocol();
      cp.setId(new Long(BizTestCaseUtility.CP_WITH_SCIENTIST_AS_PI));
      Participant participant = BaseTestCaseUtility.initParticipant();
      participant.setSocialSecurityNumber("111-22-3233");
      try {
        participant.setBirthDate(
            Utility.parseDate("05-02-1984", CommonServiceLocator.getInstance().getDatePattern()));
      } catch (ParseException e) {
        Logger.out.debug("" + e);
      }
      System.out.println("Participant" + participant);
      SessionDataBean bean = (SessionDataBean) getSession().getAttribute("sessionData");
      try {
        participant = (Participant) appService.createObject(participant);
      } catch (Exception e) {
        e.printStackTrace();
        assertFalse(e.getMessage(), true);
      }
      BizTestCaseUtility.setNameObjectMap("ParticipantWithScientistAsPI", participant);
      CollectionProtocolRegistration collectionProtocolRegistration =
          new CollectionProtocolRegistration();

      collectionProtocolRegistration.setCollectionProtocol(cp);
      collectionProtocolRegistration.setParticipant(participant);
      collectionProtocolRegistration.setProtocolParticipantIdentifier("");
      collectionProtocolRegistration.setActivityStatus("Active");

      try {
        collectionProtocolRegistration.setRegistrationDate(
            Utility.parseDate("08/15/2006", Utility.datePattern("08/15/2006")));

        collectionProtocolRegistration.setConsentSignatureDate(
            Utility.parseDate("11/23/2006", Utility.datePattern("11/23/2006")));
        System.out.println("Creating CPR");
      } catch (ParseException e) {
        e.printStackTrace();
      }

      collectionProtocolRegistration.setSignedConsentDocumentURL("F:/doc/consentDoc.doc");

      User user = new User();
      user.setId(new Long(1));

      collectionProtocolRegistration.setConsentWitness(user);

      //				Collection consentTierResponseCollection = new LinkedHashSet();
      //				Collection consentTierCollection = new LinkedHashSet();
      //
      //				consentTierCollection = cp.getConsentTierCollection();
      //				System.out.println("Creating CPR");
      //				Iterator consentTierItr = consentTierCollection.iterator();
      //				System.out.println("Creating CPR");
      //				 while(consentTierItr.hasNext())
      //				 {
      //					 ConsentTier consent= (ConsentTier) consentTierItr.next();
      //					 ConsentTierResponse response= new ConsentTierResponse();
      //					 response.setResponse("Yes");
      //					 response.setConsentTier(consent);
      //					 consentTierResponseCollection.add(response);
      //				 }
      //
      //
      //	collectionProtocolRegistration.setConsentTierResponseCollection(consentTierResponseCollection);
      try {
        collectionProtocolRegistration =
            (CollectionProtocolRegistration)
                appService.createObject(collectionProtocolRegistration);
      } catch (Exception e) {
        Logger.out.error(e.getMessage(), e);
        e.printStackTrace();
        assertFalse(e.getMessage(), true);
      }
      BizTestCaseUtility.setNameObjectMap("CPRWithScientistAsPI", collectionProtocolRegistration);

      SpecimenCollectionGroup scg = new SpecimenCollectionGroup();

      scg = (SpecimenCollectionGroup) BaseTestCaseUtility.createSCG(collectionProtocolRegistration);
      Site site = new Site();
      site.setId(new Long(BizTestCaseUtility.CP_WITH_ALLOW_READ_PRIV));
      scg.setSpecimenCollectionSite(site);
      scg.setName("New SCG" + UniqueKeyGeneratorUtil.getUniqueKey());
      scg = (SpecimenCollectionGroup) BaseTestCaseUtility.setEventParameters(scg);
      scg.setSurgicalPathologyNumber("SPN" + UniqueKeyGeneratorUtil.getUniqueKey());
      System.out.println("Creating SCG");

      try {
        scg = (SpecimenCollectionGroup) appService.createObject(scg);
        System.out.println("SCG::" + scg.getName());
      } catch (Exception e) {
        Logger.out.error(e.getMessage(), e);
        e.printStackTrace();
        assertFalse(e.getMessage(), true);
      }

      IdentifiedSurgicalPathologyReport identifiedSurgicalPathologyReport =
          new IdentifiedSurgicalPathologyReport();
      identifiedSurgicalPathologyReport.setActivityStatus(Status.ACTIVITY_STATUS_ACTIVE.toString());
      identifiedSurgicalPathologyReport.setCollectionDateTime(new Date());
      identifiedSurgicalPathologyReport.setIsFlagForReview(new Boolean(false));
      identifiedSurgicalPathologyReport.setReportStatus(CaTIESConstants.PENDING_FOR_DEID);
      identifiedSurgicalPathologyReport.setReportSource(site);
      TextContent textContent = new TextContent();
      String data =
          "[FINAL DIAGNOSIS]\n"
              + "This is the Final Diagnosis Text"
              + "\n\n[GROSS DESCRIPTION]"
              + "The specimen is received unfixed labeled hernia sac and consists of a soft, pink to yellow segment of fibrous and fatty tissue measuring 7.5cm in length x 3.2 x 0.9cm with a partly defined lumen.  Representative tissue submitted labeled 1A.";

      textContent.setData(data);
      textContent.setSurgicalPathologyReport(identifiedSurgicalPathologyReport);
      Set reportSectionCollection = new HashSet();
      ReportSection reportSection1 = new ReportSection();
      reportSection1.setName("GDT");
      reportSection1.setDocumentFragment(
          "The specimen is received unfixed labeled hernia sac and consists of a soft, pink to yellow segment of fibrous and fatty tissue measuring 7.5cm in length x 3.2 x 0.9cm with a partly defined lumen.  Representative tissue submitted labeled 1A.");
      reportSection1.setTextContent(textContent);

      ReportSection reportSection2 = new ReportSection();
      reportSection2.setName("FIN");
      reportSection2.setDocumentFragment("This is the Final Diagnosis Text");
      reportSection2.setTextContent(textContent);

      reportSectionCollection.add(reportSection1);
      reportSectionCollection.add(reportSection2);

      textContent.setReportSectionCollection(reportSectionCollection);

      identifiedSurgicalPathologyReport.setTextContent(textContent);
      identifiedSurgicalPathologyReport.setSpecimenCollectionGroup(scg);
      scg.setSurgicalPathologyNumber("SPN" + UniqueKeyGeneratorUtil.getUniqueKey());

      try {
        identifiedSurgicalPathologyReport =
            (IdentifiedSurgicalPathologyReport)
                appService.createObject(identifiedSurgicalPathologyReport);
      } catch (Exception e) {
        Logger.out.error(e.getMessage(), e);
        e.printStackTrace();
        assertFalse(e.getMessage(), true);
      }
      BizTestCaseUtility.setObjectMap(
          identifiedSurgicalPathologyReport, IdentifiedSurgicalPathologyReport.class);

      BizTestCaseUtility.setNameObjectMap("SCGWithScientistAsPI", scg);
      //				TissueSpecimen specimenObj = (TissueSpecimen) BaseTestCaseUtility.initTissueSpecimen();
      //				specimenObj.setSpecimenCollectionGroup(scg);
      //				StorageContainer sc = new StorageContainer();
      //				sc.setId(new Long(1));
      //				specimenObj.setStorageContainer(sc);
      //				specimenObj.setPositionDimensionOne(new Integer(3));
      //				specimenObj.setPositionDimensionTwo(new Integer(1));
      //				try{
      //					specimenObj =  (TissueSpecimen) appService.createObject(specimenObj);
      //					System.out.println("Mol Specimen:"+ specimenObj.getLabel());
      //				}
      //				catch(Exception e){
      //					Logger.out.error(e.getMessage(),e);
      //		           	e.printStackTrace();
      //		           	assertFalse("Failed to register participant", true);
      //				}
    } catch (Exception e) {
      Logger.out.error(e.getMessage(), e);
      e.printStackTrace();
      assertFalse(e.getMessage(), true);
    }
  }