/** Called from bicat.gui.window.Filter */
public void filter(
int data, int list, int idx, int minG, int maxG, int minC, int maxC, int nrBCs, int overlap) {
if (engine.isDebug()) System.out.println("Starting filter ...");
Dataset BcR = (Dataset) engine.getDatasetList().get(data);
LinkedList biclusterList = (LinkedList) BcR.getBCsList(list).get(idx);
int limit_G = BcR.getGeneCount();
int limit_C = BcR.getWorkingChipCount();
biclusterList = filterBySize(biclusterList, minG, maxG, minC, maxC, limit_G, limit_C);
biclusterList = filterByOverlap(biclusterList, nrBCs, overlap);
// do management ...
BcR.updateFilterBiclustersLists(biclusterList, list, idx);
if (owner != null) {
owner.updateFilterMenu();
owner.buildTree();
owner.getTree().setSelectionPath(owner.getPreprocessedPath());
int row = owner.getTree().getRowCount() - 1;
while (row >= 0) {
owner.getTree().collapseRow(row);
row--;
}
}
}
