/** Tests that the handler doesn't attempt to deal with data is should not. */ @Test public void capabilities() { CopyNumberAlterationCriterion criterion = new CopyNumberAlterationCriterion(); CopyNumberAlterationCriterionHandler handler = CopyNumberAlterationCriterionHandler.create(criterion); assertFalse(handler.hasReporterCriterion()); assertFalse(handler.isReporterMatchHandler()); assertTrue(handler.hasCriterionSpecifiedSegmentValues()); assertFalse(handler.hasCriterionSpecifiedReporterValues()); }
/** Tests for handling calls value criterion type. */ @Test public void callsValues() { Set<Integer> callsValues = new HashSet<Integer>(); callsValues.add(1); CopyNumberAlterationCriterion criterion = new CopyNumberAlterationCriterion(); criterion.setCopyNumberCriterionType(CopyNumberCriterionTypeEnum.CALLS_VALUE); criterion.setCallsValues(callsValues); CopyNumberAlterationCriterionHandler handler = CopyNumberAlterationCriterionHandler.create(criterion); assertTrue(handler.hasCriterionSpecifiedSegmentValues()); assertTrue(handler.hasCriterionSpecifiedSegmentCallsValues()); assertEquals( GenomicCriteriaMatchTypeEnum.MATCH_POSITIVE_OR_NEGATIVE, handler.getSegmentCallsValueMatchCriterionType(1)); assertFalse( GenomicCriteriaMatchTypeEnum.MATCH_POSITIVE_OR_NEGATIVE.equals( handler.getSegmentCallsValueMatchCriterionType(2))); }