/** Tests that the handler doesn't attempt to deal with data is should not. */
@Test
public void capabilities() {
CopyNumberAlterationCriterion criterion = new CopyNumberAlterationCriterion();
CopyNumberAlterationCriterionHandler handler =
CopyNumberAlterationCriterionHandler.create(criterion);
assertFalse(handler.hasReporterCriterion());
assertFalse(handler.isReporterMatchHandler());
assertTrue(handler.hasCriterionSpecifiedSegmentValues());
assertFalse(handler.hasCriterionSpecifiedReporterValues());
}
/** Tests for handling calls value criterion type. */
@Test
public void callsValues() {
Set<Integer> callsValues = new HashSet<Integer>();
callsValues.add(1);
CopyNumberAlterationCriterion criterion = new CopyNumberAlterationCriterion();
criterion.setCopyNumberCriterionType(CopyNumberCriterionTypeEnum.CALLS_VALUE);
criterion.setCallsValues(callsValues);
CopyNumberAlterationCriterionHandler handler =
CopyNumberAlterationCriterionHandler.create(criterion);
assertTrue(handler.hasCriterionSpecifiedSegmentValues());
assertTrue(handler.hasCriterionSpecifiedSegmentCallsValues());
assertEquals(
GenomicCriteriaMatchTypeEnum.MATCH_POSITIVE_OR_NEGATIVE,
handler.getSegmentCallsValueMatchCriterionType(1));
assertFalse(
GenomicCriteriaMatchTypeEnum.MATCH_POSITIVE_OR_NEGATIVE.equals(
handler.getSegmentCallsValueMatchCriterionType(2)));
}