protected HttpUriRequest createGoodCoAnnotationRequest(int n) throws URISyntaxException {
URIBuilder uriBuilder =
new URIBuilder()
.setScheme("http")
.setHost("localhost")
.setPort(9031)
// .setPath("/owlsim/getCoAnnotationListForAttribute/");
.setPath("/owlsim/getCoAnnotatedClasses/");
List<OWLClass> allClasses = new ArrayList<OWLClass>();
allClasses.addAll(g.getAllOWLClasses());
Collections.shuffle(allClasses);
int i = 0;
/*
for (OWLClass c : allClasses) {
String id = g.getIdentifier(c);
uriBuilder.addParameter("a", id);
i++;
if (i >= n)
break;
} */
// uriBuilder.addParameter("a","HP:0001252");
// uriBuilder.addParameter("a","HP:0001250");
// uriBuilder.addParameter("a","HP:0000252");
uriBuilder.addParameter("a", "MP:0002082");
uriBuilder.addParameter("limit", "5");
URI uri = uriBuilder.build();
LOG.info("Getting URL=" + uri);
HttpUriRequest httpUriRequest = new HttpGet(uri);
LOG.info("Got URL=" + uri);
return httpUriRequest;
}
protected HttpUriRequest createGoodAnnotSufRequest(int n) throws URISyntaxException {
URIBuilder uriBuilder =
new URIBuilder()
.setScheme("http")
.setHost("localhost")
.setPort(9031)
.setPath("/owlsim/getAnnotationSufficiencyScore/");
List<OWLClass> allClasses = new ArrayList<OWLClass>();
allClasses.addAll(g.getAllOWLClasses());
Collections.shuffle(allClasses);
int i = 0;
for (OWLClass c : allClasses) {
String id = g.getIdentifier(c);
uriBuilder.addParameter("a", id);
i++;
if (i >= n) break;
}
uriBuilder.addParameter("limit", "5");
URI uri = uriBuilder.build();
LOG.info("Getting URL=" + uri);
HttpUriRequest httpUriRequest = new HttpGet(uri);
LOG.info("Got URL=" + uri);
return httpUriRequest;
}
protected HttpUriRequest createBadAnnotProfileWithSubgraphsRequest(int n)
throws URISyntaxException {
URIBuilder uriBuilder =
new URIBuilder()
.setScheme("http")
.setHost("localhost")
.setPort(9031)
.setPath("/owlsim/getAttributeInformationProfile/");
List<OWLClass> allClasses = new ArrayList<OWLClass>();
allClasses.addAll(g.getAllOWLClasses());
Collections.shuffle(allClasses);
int i = 0;
for (OWLClass c : allClasses) {
String id = g.getIdentifier(c);
uriBuilder.addParameter("a", id);
// get at least one ancestor of each class
OWLClass r = (OWLClass) g.getAncestors(c).iterator().next();
uriBuilder.addParameter("r", g.getIdentifier(r));
i++;
if (i >= n) break;
}
uriBuilder.addParameter("a", "BOGUS:1234567");
uriBuilder.addParameter("r", "BOGUS:0000003");
Random rand = new Random();
int r = 0;
// get some random classes
for (i = 0; i < n; i++) {
r = rand.nextInt(allClasses.size());
OWLClass c = allClasses.get(r);
String id = g.getIdentifier(c);
uriBuilder.addParameter("r", id);
i++;
if (i >= n) break;
}
uriBuilder.addParameter("limit", "5");
URI uri = uriBuilder.build();
LOG.info("Getting URL=" + uri);
HttpUriRequest httpUriRequest = new HttpGet(uri);
LOG.info("Got URL=" + uri);
return httpUriRequest;
}
protected HttpUriRequest createCompareByAttributeSetsRequest(int nA, int nB)
throws URISyntaxException {
URIBuilder uriBuilder =
new URIBuilder()
.setScheme("http")
.setHost("localhost")
.setPort(9031)
.setPath("/owlsim/compareAttributeSets/");
List<OWLClass> allClasses = new ArrayList<OWLClass>();
allClasses.addAll(g.getAllOWLClasses());
Collections.shuffle(allClasses);
int i = 0;
for (OWLClass c : allClasses) {
String id = g.getIdentifier(c);
uriBuilder.addParameter("a", id);
// get at least one ancestor of each class
i++;
if (i >= nA) break;
}
Collections.shuffle(allClasses);
i = 0;
for (OWLClass c : allClasses) {
String id = g.getIdentifier(c);
uriBuilder.addParameter("b", id);
// get at least one ancestor of each class
i++;
if (i >= nB) break;
}
URI uri = uriBuilder.build();
LOG.info("Getting URL=" + uri);
HttpUriRequest httpUriRequest = new HttpGet(uri);
LOG.info("Got URL=" + uri);
return httpUriRequest;
}
protected HttpUriRequest createPartiallyBogusAnnotSufRequest(int n) throws URISyntaxException {
URIBuilder uriBuilder =
new URIBuilder()
.setScheme("http")
.setHost("localhost")
.setPort(9031)
.setPath("/owlsim/getAnnotationSufficiencyScore/");
int i = 0;
for (OWLClass c : g.getAllOWLClasses()) {
String id = g.getIdentifier(c);
uriBuilder.addParameter("a", id);
uriBuilder.addParameter("a", "BOGUS:000000" + i);
i++;
if (i >= n) break;
}
uriBuilder.addParameter("limit", "5");
URI uri = uriBuilder.build();
LOG.info("Getting URL=" + uri);
HttpUriRequest httpUriRequest = new HttpGet(uri);
LOG.info("Got URL=" + uri);
return httpUriRequest;
}