private void writeTree(GeneBranch tree, String dir) {
try {
BufferedWriter writer1 = new BufferedWriter(new FileWriter(dir + tree.gene + ".sif"));
BufferedWriter writer2 = new BufferedWriter(new FileWriter(dir + tree.gene + ".format"));
writer2.write("graph\tgrouping\ton\n");
writer2.write("node\t" + tree.gene + "\tcolor\t255 255 200\n");
writeBranches(tree.gene, tree, writer1, writer2);
writer1.close();
writer2.close();
} catch (IOException e) {
e.printStackTrace();
System.exit(1);
}
}
private void printVals(double[] vals1, double[] vals2, String symbol) {
try {
BufferedWriter writer = new BufferedWriter(new FileWriter("/home/ozgun/Desktop/temp.txt"));
writer.write("Ras-mutated\tBRAF-mutated\n");
for (int i = 0; i < Math.max(vals1.length, vals2.length); i++) {
if (i < vals1.length) writer.write(vals1[i] + "");
writer.write("\t");
if (i < vals2.length) writer.write(vals2[i] + "");
writer.write("\n");
}
writer.close();
} catch (IOException e) {
e.printStackTrace();
}
}