/** * Read screen and store result in native buffer. * * @param dim dimension of the video * @return true if success, false otherwise */ private ByteBuffer readScreenNative(Dimension dim) { int size = dim.width * dim.height * 4 + FFmpeg.FF_INPUT_BUFFER_PADDING_SIZE; ByteBuffer data = byteBufferPool.getBuffer(size); data.setLength(size); /* get desktop screen via native grabber */ boolean b; try { b = desktopInteract.captureScreen( displayIndex, x, y, dim.width, dim.height, data.getPtr(), data.getLength()); } catch (Throwable t) { if (t instanceof ThreadDeath) { throw (ThreadDeath) t; } else { b = false; // logger.error("Failed to grab screen!", t); } } if (!b) { data.free(); data = null; } return data; }
/** * Blocks and reads into a <tt>Buffer</tt> from this <tt>PullBufferStream</tt>. * * @param buffer the <tt>Buffer</tt> this <tt>PullBufferStream</tt> is to read into * @throws IOException if an I/O error occurs while this <tt>PullBufferStream</tt> reads into the * specified <tt>Buffer</tt> * @see AbstractVideoPullBufferStream#doRead(Buffer) */ @Override protected void doRead(Buffer buffer) throws IOException { /* * Determine the Format in which we're expected to output. We cannot * rely on the Format always being specified in the Buffer because it is * not its responsibility, the DataSource of this ImageStream knows the * output Format. */ Format format = buffer.getFormat(); if (format == null) { format = getFormat(); if (format != null) buffer.setFormat(format); } if (format instanceof AVFrameFormat) { Object o = buffer.getData(); AVFrame frame; if (o instanceof AVFrame) frame = (AVFrame) o; else { frame = new AVFrame(); buffer.setData(frame); } AVFrameFormat avFrameFormat = (AVFrameFormat) format; Dimension size = avFrameFormat.getSize(); ByteBuffer data = readScreenNative(size); if (data != null) { if (frame.avpicture_fill(data, avFrameFormat) < 0) { data.free(); throw new IOException("avpicture_fill"); } } else { /* * This can happen when we disconnect a monitor from computer * before or during grabbing. */ throw new IOException("Failed to grab screen."); } } else { byte[] bytes = (byte[]) buffer.getData(); Dimension size = ((VideoFormat) format).getSize(); bytes = readScreen(bytes, size); buffer.setData(bytes); buffer.setOffset(0); buffer.setLength(bytes.length); } buffer.setHeader(null); buffer.setTimeStamp(System.nanoTime()); buffer.setSequenceNumber(seqNo); buffer.setFlags(Buffer.FLAG_SYSTEM_TIME | Buffer.FLAG_LIVE_DATA); seqNo++; }
/** * Copy ARGB pixels to a ByteBuffer without changing the ARGB byte order. If used to make a * texture, the pixel format is GL12.GL_BGRA. With this format we can leave pixels in ARGB order * (faster), but unfortunately I had problems building mipmaps in BGRA format * (GLU.gluBuild2DMipmaps() did not recognize GL_UNSIGNED_INT_8_8_8_8 and * GL_UNSIGNED_INT_8_8_8_8_REV types so screwed up the BGRA/ARGB byte order on Mac). * * @return ByteBuffer */ public static ByteBuffer convertImagePixelsARGB( int[] jpixels, int imgw, int imgh, boolean flipVertically) { // flip Y axis if (flipVertically) { jpixels = flipPixels(jpixels, imgw, imgh); // flip Y axis } // put int pixels into Byte Buffer ByteBuffer bb = GLApp.allocBytes(jpixels.length * 4); // 4 bytes per pixel bb.asIntBuffer().put(jpixels); return bb; }
/** * Sets one or more icons for the Display. * * <ul> * <li>On Windows you should supply at least one 16x16 icon and one 32x32. * <li>Linux (and similar platforms) expect one 32x32 icon. * <li>Mac OS X should be supplied one 128x128 icon * </ul> * * The implementation will use the supplied ByteBuffers with image data in RGBA and perform any * conversions nescesarry for the specific platform. * * @param icons Array of icons in RGBA mode * @return number of icons used. */ public int setIcon(ByteBuffer[] icons) { boolean done_small = false; boolean done_large = false; int used = 0; int small_icon_size = 16; int large_icon_size = 32; for (ByteBuffer icon : icons) { int size = icon.limit() / 4; if ((((int) Math.sqrt(size)) == small_icon_size) && (!done_small)) { long small_new_icon = createIcon(small_icon_size, small_icon_size, icon.asIntBuffer()); sendMessage(hwnd, WM_SETICON, ICON_SMALL, small_new_icon); freeSmallIcon(); small_icon = small_new_icon; used++; done_small = true; } if ((((int) Math.sqrt(size)) == large_icon_size) && (!done_large)) { long large_new_icon = createIcon(large_icon_size, large_icon_size, icon.asIntBuffer()); sendMessage(hwnd, WM_SETICON, ICON_BIG, large_new_icon); freeLargeIcon(); large_icon = large_new_icon; used++; done_large = true; // Problem: The taskbar icon won't update until Windows sends a WM_GETICON to our window // proc and we reply. But this method is usually called // on init and it might take a while before the next call to nUpdate (because of resources // being loaded, etc). So we wait for the next // WM_GETICON message (usually received about 100ms after WM_SETICON) to make sure the // taskbar icon has updated before we return to the user. // (We wouldn't need to do this if the event loop was running continuously on its own // thread.) iconsLoaded = false; // Track how long the wait takes and give up at 500ms, just in case. long time = System.nanoTime(); long MAX_WAIT = 500L * 1000L * 1000L; while (true) { nUpdate(); if (iconsLoaded || MAX_WAIT < System.nanoTime() - time) break; Thread.yield(); } } } return used; }
private void readPalette() { RandomAccessFile rIn = null; ByteBuffer buf = null; int i; try { if (paletteFile != null) { // see if the file exists, if not, set it to the default palette. File file = new File(paletteFile); numPaletteEntries = (int) (file.length() / 4); buf = ByteBuffer.allocate(numPaletteEntries * 4); rIn = new RandomAccessFile(paletteFile, "r"); FileChannel inChannel = rIn.getChannel(); inChannel.position(0); inChannel.read(buf); // Check the byte order. buf.order(ByteOrder.LITTLE_ENDIAN); buf.rewind(); IntBuffer ib = buf.asIntBuffer(); paletteData = new int[numPaletteEntries]; ib.get(paletteData); ib = null; } } catch (Exception e) { System.err.println("Caught exception: " + e.toString()); System.err.println(e.getStackTrace()); } finally { if (rIn != null) { try { rIn.close(); } catch (Exception e) { } } } }
/** * Reads an image from an archived file and return it as ByteBuffer object. * * @author Mike Butler, Kiet Le */ private ByteBuffer readImage(String filename, Dimension dim) { if (dim == null) dim = new Dimension(0, 0); ByteBuffer bytes = null; try { DataInputStream dis = new DataInputStream(getClass().getClassLoader().getResourceAsStream(filename)); dim.width = dis.readInt(); dim.height = dis.readInt(); System.out.println("Creating buffer, width: " + dim.width + " height: " + dim.height); // byte[] buf = new byte[3 * dim.height * dim.width]; bytes = BufferUtil.newByteBuffer(3 * dim.width * dim.height); for (int i = 0; i < bytes.capacity(); i++) { bytes.put(dis.readByte()); } dis.close(); } catch (Exception e) { e.printStackTrace(); } bytes.rewind(); return bytes; }
/** * Returns a ByteBuffer of BufferedImage data. Ensure BufferedImage is of 4BYTE_ABGR type. If * imageFormat is set to GL_RGBA, byte stream will be converted. */ private ByteBuffer getByteBuffer(final BufferedImage _image) { final DataBuffer buffer = _image.getRaster().getDataBuffer(); final int type = buffer.getDataType(); if (type == DataBuffer.TYPE_BYTE) { final byte[] data = ((DataBufferByte) buffer).getData(); if (imageFormat == GL3.GL_RGBA) { convertABGRtoRGBA(data); } return ByteBuffer.wrap(data); } System.out.println("Failed to determine DataBuffer type."); return null; }
/** * Sets the data * * @param buffer Bytebuffer to put data into */ public void get(ByteBuffer buffer) { buffer.putInt((int) world.x); buffer.putInt((int) world.y); buffer.putDouble(radians); buffer.put((byte) (moving ? 1 : 0)); for (Bullet b : gun.getBullets()) { if (b != null) { buffer.putInt((int) b.getWorld().x); buffer.putInt((int) b.getWorld().y); buffer.putDouble(b.getAngle()); } else { buffer.putInt(-1); buffer.putInt(-1); buffer.putDouble(-1); } } }
public void init(GLAutoDrawable drawable) { GL gl = drawable.getGL(); float m[] = { 0.0f, 1.0f, 0.0f, 0.0f, // 0.0f, 0.0f, 1.0f, 0.0f, // 1.0f, 0.0f, 0.0f, 0.0f, // 0.0f, 0.0f, 0.0f, 1.0f }; pixels = readImage("Data/leeds.bin", dim); System.out.println(pixels.toString()); gl.glPixelStorei(GL.GL_UNPACK_ALIGNMENT, 1); gl.glClearColor(0.0f, 0.0f, 0.0f, 0.0f); gl.glMatrixMode(GL.GL_COLOR); gl.glLoadMatrixf(m, 0); gl.glMatrixMode(GL.GL_MODELVIEW); }
public void build_bricks() { ImagePlus imp; ImagePlus orgimp; ImageStack stack; FileInfo finfo; if (lvImgTitle.isEmpty()) return; orgimp = WindowManager.getImage(lvImgTitle.get(0)); imp = orgimp; finfo = imp.getFileInfo(); if (finfo == null) return; int[] dims = imp.getDimensions(); int imageW = dims[0]; int imageH = dims[1]; int nCh = dims[2]; int imageD = dims[3]; int nFrame = dims[4]; int bdepth = imp.getBitDepth(); double xspc = finfo.pixelWidth; double yspc = finfo.pixelHeight; double zspc = finfo.pixelDepth; double z_aspect = Math.max(xspc, yspc) / zspc; int orgW = imageW; int orgH = imageH; int orgD = imageD; double orgxspc = xspc; double orgyspc = yspc; double orgzspc = zspc; lv = lvImgTitle.size(); if (filetype == "JPEG") { for (int l = 0; l < lv; l++) { if (WindowManager.getImage(lvImgTitle.get(l)).getBitDepth() != 8) { IJ.error("A SOURCE IMAGE MUST BE 8BIT GLAYSCALE"); return; } } } // calculate levels /* int baseXY = 256; int baseZ = 256; if (z_aspect < 0.5) baseZ = 128; if (z_aspect > 2.0) baseXY = 128; if (z_aspect >= 0.5 && z_aspect < 1.0) baseZ = (int)(baseZ*z_aspect); if (z_aspect > 1.0 && z_aspect <= 2.0) baseXY = (int)(baseXY/z_aspect); IJ.log("Z_aspect: " + z_aspect); IJ.log("BaseXY: " + baseXY); IJ.log("BaseZ: " + baseZ); */ int baseXY = 256; int baseZ = 128; int dbXY = Math.max(orgW, orgH) / baseXY; if (Math.max(orgW, orgH) % baseXY > 0) dbXY *= 2; int dbZ = orgD / baseZ; if (orgD % baseZ > 0) dbZ *= 2; lv = Math.max(log2(dbXY), log2(dbZ)) + 1; int ww = orgW; int hh = orgH; int dd = orgD; for (int l = 0; l < lv; l++) { int bwnum = ww / baseXY; if (ww % baseXY > 0) bwnum++; int bhnum = hh / baseXY; if (hh % baseXY > 0) bhnum++; int bdnum = dd / baseZ; if (dd % baseZ > 0) bdnum++; if (bwnum % 2 == 0) bwnum++; if (bhnum % 2 == 0) bhnum++; if (bdnum % 2 == 0) bdnum++; int bw = (bwnum <= 1) ? ww : ww / bwnum + 1 + (ww % bwnum > 0 ? 1 : 0); int bh = (bhnum <= 1) ? hh : hh / bhnum + 1 + (hh % bhnum > 0 ? 1 : 0); int bd = (bdnum <= 1) ? dd : dd / bdnum + 1 + (dd % bdnum > 0 ? 1 : 0); bwlist.add(bw); bhlist.add(bh); bdlist.add(bd); IJ.log("LEVEL: " + l); IJ.log(" width: " + ww); IJ.log(" hight: " + hh); IJ.log(" depth: " + dd); IJ.log(" bw: " + bw); IJ.log(" bh: " + bh); IJ.log(" bd: " + bd); int xyl2 = Math.max(ww, hh) / baseXY; if (Math.max(ww, hh) % baseXY > 0) xyl2 *= 2; if (lv - 1 - log2(xyl2) <= l) { ww /= 2; hh /= 2; } IJ.log(" xyl2: " + (lv - 1 - log2(xyl2))); int zl2 = dd / baseZ; if (dd % baseZ > 0) zl2 *= 2; if (lv - 1 - log2(zl2) <= l) dd /= 2; IJ.log(" zl2: " + (lv - 1 - log2(zl2))); if (l < lv - 1) { lvImgTitle.add(lvImgTitle.get(0) + "_level" + (l + 1)); IJ.selectWindow(lvImgTitle.get(0)); IJ.run( "Scale...", "x=- y=- z=- width=" + ww + " height=" + hh + " depth=" + dd + " interpolation=Bicubic average process create title=" + lvImgTitle.get(l + 1)); } } for (int l = 0; l < lv; l++) { IJ.log(lvImgTitle.get(l)); } Document doc = newXMLDocument(); Element root = doc.createElement("BRK"); root.setAttribute("version", "1.0"); root.setAttribute("nLevel", String.valueOf(lv)); root.setAttribute("nChannel", String.valueOf(nCh)); root.setAttribute("nFrame", String.valueOf(nFrame)); doc.appendChild(root); for (int l = 0; l < lv; l++) { IJ.showProgress(0.0); int[] dims2 = imp.getDimensions(); IJ.log( "W: " + String.valueOf(dims2[0]) + " H: " + String.valueOf(dims2[1]) + " C: " + String.valueOf(dims2[2]) + " D: " + String.valueOf(dims2[3]) + " T: " + String.valueOf(dims2[4]) + " b: " + String.valueOf(bdepth)); bw = bwlist.get(l).intValue(); bh = bhlist.get(l).intValue(); bd = bdlist.get(l).intValue(); boolean force_pow2 = false; /* if(IsPowerOf2(bw) && IsPowerOf2(bh) && IsPowerOf2(bd)) force_pow2 = true; if(force_pow2){ //force pow2 if(Pow2(bw) > bw) bw = Pow2(bw)/2; if(Pow2(bh) > bh) bh = Pow2(bh)/2; if(Pow2(bd) > bd) bd = Pow2(bd)/2; } if(bw > imageW) bw = (Pow2(imageW) == imageW) ? imageW : Pow2(imageW)/2; if(bh > imageH) bh = (Pow2(imageH) == imageH) ? imageH : Pow2(imageH)/2; if(bd > imageD) bd = (Pow2(imageD) == imageD) ? imageD : Pow2(imageD)/2; */ if (bw > imageW) bw = imageW; if (bh > imageH) bh = imageH; if (bd > imageD) bd = imageD; if (bw <= 1 || bh <= 1 || bd <= 1) break; if (filetype == "JPEG" && (bw < 8 || bh < 8)) break; Element lvnode = doc.createElement("Level"); lvnode.setAttribute("lv", String.valueOf(l)); lvnode.setAttribute("imageW", String.valueOf(imageW)); lvnode.setAttribute("imageH", String.valueOf(imageH)); lvnode.setAttribute("imageD", String.valueOf(imageD)); lvnode.setAttribute("xspc", String.valueOf(xspc)); lvnode.setAttribute("yspc", String.valueOf(yspc)); lvnode.setAttribute("zspc", String.valueOf(zspc)); lvnode.setAttribute("bitDepth", String.valueOf(bdepth)); root.appendChild(lvnode); Element brksnode = doc.createElement("Bricks"); brksnode.setAttribute("brick_baseW", String.valueOf(bw)); brksnode.setAttribute("brick_baseH", String.valueOf(bh)); brksnode.setAttribute("brick_baseD", String.valueOf(bd)); lvnode.appendChild(brksnode); ArrayList<Brick> bricks = new ArrayList<Brick>(); int mw, mh, md, mw2, mh2, md2; double tx0, ty0, tz0, tx1, ty1, tz1; double bx0, by0, bz0, bx1, by1, bz1; for (int k = 0; k < imageD; k += bd) { if (k > 0) k--; for (int j = 0; j < imageH; j += bh) { if (j > 0) j--; for (int i = 0; i < imageW; i += bw) { if (i > 0) i--; mw = Math.min(bw, imageW - i); mh = Math.min(bh, imageH - j); md = Math.min(bd, imageD - k); if (force_pow2) { mw2 = Pow2(mw); mh2 = Pow2(mh); md2 = Pow2(md); } else { mw2 = mw; mh2 = mh; md2 = md; } if (filetype == "JPEG") { if (mw2 < 8) mw2 = 8; if (mh2 < 8) mh2 = 8; } tx0 = i == 0 ? 0.0d : ((mw2 - mw + 0.5d) / mw2); ty0 = j == 0 ? 0.0d : ((mh2 - mh + 0.5d) / mh2); tz0 = k == 0 ? 0.0d : ((md2 - md + 0.5d) / md2); tx1 = 1.0d - 0.5d / mw2; if (mw < bw) tx1 = 1.0d; if (imageW - i == bw) tx1 = 1.0d; ty1 = 1.0d - 0.5d / mh2; if (mh < bh) ty1 = 1.0d; if (imageH - j == bh) ty1 = 1.0d; tz1 = 1.0d - 0.5d / md2; if (md < bd) tz1 = 1.0d; if (imageD - k == bd) tz1 = 1.0d; bx0 = i == 0 ? 0.0d : (i + 0.5d) / (double) imageW; by0 = j == 0 ? 0.0d : (j + 0.5d) / (double) imageH; bz0 = k == 0 ? 0.0d : (k + 0.5d) / (double) imageD; bx1 = Math.min((i + bw - 0.5d) / (double) imageW, 1.0d); if (imageW - i == bw) bx1 = 1.0d; by1 = Math.min((j + bh - 0.5d) / (double) imageH, 1.0d); if (imageH - j == bh) by1 = 1.0d; bz1 = Math.min((k + bd - 0.5d) / (double) imageD, 1.0d); if (imageD - k == bd) bz1 = 1.0d; int x, y, z; x = i - (mw2 - mw); y = j - (mh2 - mh); z = k - (md2 - md); bricks.add( new Brick( x, y, z, mw2, mh2, md2, 0, 0, tx0, ty0, tz0, tx1, ty1, tz1, bx0, by0, bz0, bx1, by1, bz1)); } } } Element fsnode = doc.createElement("Files"); lvnode.appendChild(fsnode); stack = imp.getStack(); int totalbricknum = nFrame * nCh * bricks.size(); int curbricknum = 0; for (int f = 0; f < nFrame; f++) { for (int ch = 0; ch < nCh; ch++) { int sizelimit = bdsizelimit * 1024 * 1024; int bytecount = 0; int filecount = 0; int pd_bufsize = Math.max(sizelimit, bw * bh * bd * bdepth / 8); byte[] packed_data = new byte[pd_bufsize]; String base_dataname = basename + "_Lv" + String.valueOf(l) + "_Ch" + String.valueOf(ch) + "_Fr" + String.valueOf(f); String current_dataname = base_dataname + "_data" + filecount; Brick b_first = bricks.get(0); if (b_first.z_ != 0) IJ.log("warning"); int st_z = b_first.z_; int ed_z = b_first.z_ + b_first.d_; LinkedList<ImageProcessor> iplist = new LinkedList<ImageProcessor>(); for (int s = st_z; s < ed_z; s++) iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1))); // ImagePlus test; // ImageStack tsst; // test = NewImage.createByteImage("test", imageW, imageH, imageD, // NewImage.FILL_BLACK); // tsst = test.getStack(); for (int i = 0; i < bricks.size(); i++) { Brick b = bricks.get(i); if (ed_z > b.z_ || st_z < b.z_ + b.d_) { if (b.z_ > st_z) { for (int s = 0; s < b.z_ - st_z; s++) iplist.pollFirst(); st_z = b.z_; } else if (b.z_ < st_z) { IJ.log("warning"); for (int s = st_z - 1; s > b.z_; s--) iplist.addFirst(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1))); st_z = b.z_; } if (b.z_ + b.d_ > ed_z) { for (int s = ed_z; s < b.z_ + b.d_; s++) iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1))); ed_z = b.z_ + b.d_; } else if (b.z_ + b.d_ < ed_z) { IJ.log("warning"); for (int s = 0; s < ed_z - (b.z_ + b.d_); s++) iplist.pollLast(); ed_z = b.z_ + b.d_; } } else { IJ.log("warning"); iplist.clear(); st_z = b.z_; ed_z = b.z_ + b.d_; for (int s = st_z; s < ed_z; s++) iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1))); } if (iplist.size() != b.d_) { IJ.log("Stack Error"); return; } // int zz = st_z; int bsize = 0; byte[] bdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8]; Iterator<ImageProcessor> ipite = iplist.iterator(); while (ipite.hasNext()) { // ImageProcessor tsip = tsst.getProcessor(zz+1); ImageProcessor ip = ipite.next(); ip.setRoi(b.x_, b.y_, b.w_, b.h_); if (bdepth == 8) { byte[] data = (byte[]) ip.crop().getPixels(); System.arraycopy(data, 0, bdata, bsize, data.length); bsize += data.length; } else if (bdepth == 16) { ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8); buffer.order(ByteOrder.LITTLE_ENDIAN); short[] data = (short[]) ip.crop().getPixels(); for (short e : data) buffer.putShort(e); System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length); bsize += buffer.array().length; } else if (bdepth == 32) { ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8); buffer.order(ByteOrder.LITTLE_ENDIAN); float[] data = (float[]) ip.crop().getPixels(); for (float e : data) buffer.putFloat(e); System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length); bsize += buffer.array().length; } } String filename = basename + "_Lv" + String.valueOf(l) + "_Ch" + String.valueOf(ch) + "_Fr" + String.valueOf(f) + "_ID" + String.valueOf(i); int offset = bytecount; int datasize = bdata.length; if (filetype == "RAW") { int dummy = -1; // do nothing } if (filetype == "JPEG" && bdepth == 8) { try { DataBufferByte db = new DataBufferByte(bdata, datasize); Raster raster = Raster.createPackedRaster(db, b.w_, b.h_ * b.d_, 8, null); BufferedImage img = new BufferedImage(b.w_, b.h_ * b.d_, BufferedImage.TYPE_BYTE_GRAY); img.setData(raster); ByteArrayOutputStream baos = new ByteArrayOutputStream(); ImageOutputStream ios = ImageIO.createImageOutputStream(baos); String format = "jpg"; Iterator<javax.imageio.ImageWriter> iter = ImageIO.getImageWritersByFormatName("jpeg"); javax.imageio.ImageWriter writer = iter.next(); ImageWriteParam iwp = writer.getDefaultWriteParam(); iwp.setCompressionMode(ImageWriteParam.MODE_EXPLICIT); iwp.setCompressionQuality((float) jpeg_quality * 0.01f); writer.setOutput(ios); writer.write(null, new IIOImage(img, null, null), iwp); // ImageIO.write(img, format, baos); bdata = baos.toByteArray(); datasize = bdata.length; } catch (IOException e) { e.printStackTrace(); return; } } if (filetype == "ZLIB") { byte[] tmpdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8]; Deflater compresser = new Deflater(); compresser.setInput(bdata); compresser.setLevel(Deflater.DEFAULT_COMPRESSION); compresser.setStrategy(Deflater.DEFAULT_STRATEGY); compresser.finish(); datasize = compresser.deflate(tmpdata); bdata = tmpdata; compresser.end(); } if (bytecount + datasize > sizelimit && bytecount > 0) { BufferedOutputStream fis = null; try { File file = new File(directory + current_dataname); fis = new BufferedOutputStream(new FileOutputStream(file)); fis.write(packed_data, 0, bytecount); } catch (IOException e) { e.printStackTrace(); return; } finally { try { if (fis != null) fis.close(); } catch (IOException e) { e.printStackTrace(); return; } } filecount++; current_dataname = base_dataname + "_data" + filecount; bytecount = 0; offset = 0; System.arraycopy(bdata, 0, packed_data, bytecount, datasize); bytecount += datasize; } else { System.arraycopy(bdata, 0, packed_data, bytecount, datasize); bytecount += datasize; } Element filenode = doc.createElement("File"); filenode.setAttribute("filename", current_dataname); filenode.setAttribute("channel", String.valueOf(ch)); filenode.setAttribute("frame", String.valueOf(f)); filenode.setAttribute("brickID", String.valueOf(i)); filenode.setAttribute("offset", String.valueOf(offset)); filenode.setAttribute("datasize", String.valueOf(datasize)); filenode.setAttribute("filetype", String.valueOf(filetype)); fsnode.appendChild(filenode); curbricknum++; IJ.showProgress((double) (curbricknum) / (double) (totalbricknum)); } if (bytecount > 0) { BufferedOutputStream fis = null; try { File file = new File(directory + current_dataname); fis = new BufferedOutputStream(new FileOutputStream(file)); fis.write(packed_data, 0, bytecount); } catch (IOException e) { e.printStackTrace(); return; } finally { try { if (fis != null) fis.close(); } catch (IOException e) { e.printStackTrace(); return; } } } } } for (int i = 0; i < bricks.size(); i++) { Brick b = bricks.get(i); Element bricknode = doc.createElement("Brick"); bricknode.setAttribute("id", String.valueOf(i)); bricknode.setAttribute("st_x", String.valueOf(b.x_)); bricknode.setAttribute("st_y", String.valueOf(b.y_)); bricknode.setAttribute("st_z", String.valueOf(b.z_)); bricknode.setAttribute("width", String.valueOf(b.w_)); bricknode.setAttribute("height", String.valueOf(b.h_)); bricknode.setAttribute("depth", String.valueOf(b.d_)); brksnode.appendChild(bricknode); Element tboxnode = doc.createElement("tbox"); tboxnode.setAttribute("x0", String.valueOf(b.tx0_)); tboxnode.setAttribute("y0", String.valueOf(b.ty0_)); tboxnode.setAttribute("z0", String.valueOf(b.tz0_)); tboxnode.setAttribute("x1", String.valueOf(b.tx1_)); tboxnode.setAttribute("y1", String.valueOf(b.ty1_)); tboxnode.setAttribute("z1", String.valueOf(b.tz1_)); bricknode.appendChild(tboxnode); Element bboxnode = doc.createElement("bbox"); bboxnode.setAttribute("x0", String.valueOf(b.bx0_)); bboxnode.setAttribute("y0", String.valueOf(b.by0_)); bboxnode.setAttribute("z0", String.valueOf(b.bz0_)); bboxnode.setAttribute("x1", String.valueOf(b.bx1_)); bboxnode.setAttribute("y1", String.valueOf(b.by1_)); bboxnode.setAttribute("z1", String.valueOf(b.bz1_)); bricknode.appendChild(bboxnode); } if (l < lv - 1) { imp = WindowManager.getImage(lvImgTitle.get(l + 1)); int[] newdims = imp.getDimensions(); imageW = newdims[0]; imageH = newdims[1]; imageD = newdims[3]; xspc = orgxspc * ((double) orgW / (double) imageW); yspc = orgyspc * ((double) orgH / (double) imageH); zspc = orgzspc * ((double) orgD / (double) imageD); bdepth = imp.getBitDepth(); } } File newXMLfile = new File(directory + basename + ".vvd"); writeXML(newXMLfile, doc); for (int l = 1; l < lv; l++) { imp = WindowManager.getImage(lvImgTitle.get(l)); imp.changes = false; imp.close(); } }
/** * Same function as in GLApp.java. Allocates a ByteBuffer to hold the given array of bytes. * * @param bytearray * @return ByteBuffer containing the contents of the byte array */ public static ByteBuffer allocBytes(byte[] bytearray) { ByteBuffer bb = ByteBuffer.allocateDirect(bytearray.length).order(ByteOrder.nativeOrder()); bb.put(bytearray).flip(); return bb; }
/** * Sets the data * * @param buffer Bytebuffer holding the data */ public void set(ByteBuffer buffer) { health = buffer.getInt(); }