/**
* Read screen and store result in native buffer.
*
* @param dim dimension of the video
* @return true if success, false otherwise
*/
private ByteBuffer readScreenNative(Dimension dim) {
int size = dim.width * dim.height * 4 + FFmpeg.FF_INPUT_BUFFER_PADDING_SIZE;
ByteBuffer data = byteBufferPool.getBuffer(size);
data.setLength(size);
/* get desktop screen via native grabber */
boolean b;
try {
b =
desktopInteract.captureScreen(
displayIndex, x, y, dim.width, dim.height, data.getPtr(), data.getLength());
} catch (Throwable t) {
if (t instanceof ThreadDeath) {
throw (ThreadDeath) t;
} else {
b = false;
// logger.error("Failed to grab screen!", t);
}
}
if (!b) {
data.free();
data = null;
}
return data;
}
/**
* Blocks and reads into a <tt>Buffer</tt> from this <tt>PullBufferStream</tt>.
*
* @param buffer the <tt>Buffer</tt> this <tt>PullBufferStream</tt> is to read into
* @throws IOException if an I/O error occurs while this <tt>PullBufferStream</tt> reads into the
* specified <tt>Buffer</tt>
* @see AbstractVideoPullBufferStream#doRead(Buffer)
*/
@Override
protected void doRead(Buffer buffer) throws IOException {
/*
* Determine the Format in which we're expected to output. We cannot
* rely on the Format always being specified in the Buffer because it is
* not its responsibility, the DataSource of this ImageStream knows the
* output Format.
*/
Format format = buffer.getFormat();
if (format == null) {
format = getFormat();
if (format != null) buffer.setFormat(format);
}
if (format instanceof AVFrameFormat) {
Object o = buffer.getData();
AVFrame frame;
if (o instanceof AVFrame) frame = (AVFrame) o;
else {
frame = new AVFrame();
buffer.setData(frame);
}
AVFrameFormat avFrameFormat = (AVFrameFormat) format;
Dimension size = avFrameFormat.getSize();
ByteBuffer data = readScreenNative(size);
if (data != null) {
if (frame.avpicture_fill(data, avFrameFormat) < 0) {
data.free();
throw new IOException("avpicture_fill");
}
} else {
/*
* This can happen when we disconnect a monitor from computer
* before or during grabbing.
*/
throw new IOException("Failed to grab screen.");
}
} else {
byte[] bytes = (byte[]) buffer.getData();
Dimension size = ((VideoFormat) format).getSize();
bytes = readScreen(bytes, size);
buffer.setData(bytes);
buffer.setOffset(0);
buffer.setLength(bytes.length);
}
buffer.setHeader(null);
buffer.setTimeStamp(System.nanoTime());
buffer.setSequenceNumber(seqNo);
buffer.setFlags(Buffer.FLAG_SYSTEM_TIME | Buffer.FLAG_LIVE_DATA);
seqNo++;
}
/**
* Copy ARGB pixels to a ByteBuffer without changing the ARGB byte order. If used to make a
* texture, the pixel format is GL12.GL_BGRA. With this format we can leave pixels in ARGB order
* (faster), but unfortunately I had problems building mipmaps in BGRA format
* (GLU.gluBuild2DMipmaps() did not recognize GL_UNSIGNED_INT_8_8_8_8 and
* GL_UNSIGNED_INT_8_8_8_8_REV types so screwed up the BGRA/ARGB byte order on Mac).
*
* @return ByteBuffer
*/
public static ByteBuffer convertImagePixelsARGB(
int[] jpixels, int imgw, int imgh, boolean flipVertically) {
// flip Y axis
if (flipVertically) {
jpixels = flipPixels(jpixels, imgw, imgh); // flip Y axis
}
// put int pixels into Byte Buffer
ByteBuffer bb = GLApp.allocBytes(jpixels.length * 4); // 4 bytes per pixel
bb.asIntBuffer().put(jpixels);
return bb;
}
/**
* Sets one or more icons for the Display.
*
* <ul>
* <li>On Windows you should supply at least one 16x16 icon and one 32x32.
* <li>Linux (and similar platforms) expect one 32x32 icon.
* <li>Mac OS X should be supplied one 128x128 icon
* </ul>
*
* The implementation will use the supplied ByteBuffers with image data in RGBA and perform any
* conversions nescesarry for the specific platform.
*
* @param icons Array of icons in RGBA mode
* @return number of icons used.
*/
public int setIcon(ByteBuffer[] icons) {
boolean done_small = false;
boolean done_large = false;
int used = 0;
int small_icon_size = 16;
int large_icon_size = 32;
for (ByteBuffer icon : icons) {
int size = icon.limit() / 4;
if ((((int) Math.sqrt(size)) == small_icon_size) && (!done_small)) {
long small_new_icon = createIcon(small_icon_size, small_icon_size, icon.asIntBuffer());
sendMessage(hwnd, WM_SETICON, ICON_SMALL, small_new_icon);
freeSmallIcon();
small_icon = small_new_icon;
used++;
done_small = true;
}
if ((((int) Math.sqrt(size)) == large_icon_size) && (!done_large)) {
long large_new_icon = createIcon(large_icon_size, large_icon_size, icon.asIntBuffer());
sendMessage(hwnd, WM_SETICON, ICON_BIG, large_new_icon);
freeLargeIcon();
large_icon = large_new_icon;
used++;
done_large = true;
// Problem: The taskbar icon won't update until Windows sends a WM_GETICON to our window
// proc and we reply. But this method is usually called
// on init and it might take a while before the next call to nUpdate (because of resources
// being loaded, etc). So we wait for the next
// WM_GETICON message (usually received about 100ms after WM_SETICON) to make sure the
// taskbar icon has updated before we return to the user.
// (We wouldn't need to do this if the event loop was running continuously on its own
// thread.)
iconsLoaded = false;
// Track how long the wait takes and give up at 500ms, just in case.
long time = System.nanoTime();
long MAX_WAIT = 500L * 1000L * 1000L;
while (true) {
nUpdate();
if (iconsLoaded || MAX_WAIT < System.nanoTime() - time) break;
Thread.yield();
}
}
}
return used;
}
private void readPalette() {
RandomAccessFile rIn = null;
ByteBuffer buf = null;
int i;
try {
if (paletteFile != null) {
// see if the file exists, if not, set it to the default palette.
File file = new File(paletteFile);
numPaletteEntries = (int) (file.length() / 4);
buf = ByteBuffer.allocate(numPaletteEntries * 4);
rIn = new RandomAccessFile(paletteFile, "r");
FileChannel inChannel = rIn.getChannel();
inChannel.position(0);
inChannel.read(buf);
// Check the byte order.
buf.order(ByteOrder.LITTLE_ENDIAN);
buf.rewind();
IntBuffer ib = buf.asIntBuffer();
paletteData = new int[numPaletteEntries];
ib.get(paletteData);
ib = null;
}
} catch (Exception e) {
System.err.println("Caught exception: " + e.toString());
System.err.println(e.getStackTrace());
} finally {
if (rIn != null) {
try {
rIn.close();
} catch (Exception e) {
}
}
}
}
/**
* Reads an image from an archived file and return it as ByteBuffer object.
*
* @author Mike Butler, Kiet Le
*/
private ByteBuffer readImage(String filename, Dimension dim) {
if (dim == null) dim = new Dimension(0, 0);
ByteBuffer bytes = null;
try {
DataInputStream dis =
new DataInputStream(getClass().getClassLoader().getResourceAsStream(filename));
dim.width = dis.readInt();
dim.height = dis.readInt();
System.out.println("Creating buffer, width: " + dim.width + " height: " + dim.height);
// byte[] buf = new byte[3 * dim.height * dim.width];
bytes = BufferUtil.newByteBuffer(3 * dim.width * dim.height);
for (int i = 0; i < bytes.capacity(); i++) {
bytes.put(dis.readByte());
}
dis.close();
} catch (Exception e) {
e.printStackTrace();
}
bytes.rewind();
return bytes;
}
/**
* Returns a ByteBuffer of BufferedImage data. Ensure BufferedImage is of 4BYTE_ABGR type. If
* imageFormat is set to GL_RGBA, byte stream will be converted.
*/
private ByteBuffer getByteBuffer(final BufferedImage _image) {
final DataBuffer buffer = _image.getRaster().getDataBuffer();
final int type = buffer.getDataType();
if (type == DataBuffer.TYPE_BYTE) {
final byte[] data = ((DataBufferByte) buffer).getData();
if (imageFormat == GL3.GL_RGBA) {
convertABGRtoRGBA(data);
}
return ByteBuffer.wrap(data);
}
System.out.println("Failed to determine DataBuffer type.");
return null;
}
/**
* Sets the data
*
* @param buffer Bytebuffer to put data into
*/
public void get(ByteBuffer buffer) {
buffer.putInt((int) world.x);
buffer.putInt((int) world.y);
buffer.putDouble(radians);
buffer.put((byte) (moving ? 1 : 0));
for (Bullet b : gun.getBullets()) {
if (b != null) {
buffer.putInt((int) b.getWorld().x);
buffer.putInt((int) b.getWorld().y);
buffer.putDouble(b.getAngle());
} else {
buffer.putInt(-1);
buffer.putInt(-1);
buffer.putDouble(-1);
}
}
}
public void init(GLAutoDrawable drawable) {
GL gl = drawable.getGL();
float m[] = {
0.0f, 1.0f, 0.0f, 0.0f, //
0.0f, 0.0f, 1.0f, 0.0f, //
1.0f, 0.0f, 0.0f, 0.0f, //
0.0f, 0.0f, 0.0f, 1.0f
};
pixels = readImage("Data/leeds.bin", dim);
System.out.println(pixels.toString());
gl.glPixelStorei(GL.GL_UNPACK_ALIGNMENT, 1);
gl.glClearColor(0.0f, 0.0f, 0.0f, 0.0f);
gl.glMatrixMode(GL.GL_COLOR);
gl.glLoadMatrixf(m, 0);
gl.glMatrixMode(GL.GL_MODELVIEW);
}
public void build_bricks() {
ImagePlus imp;
ImagePlus orgimp;
ImageStack stack;
FileInfo finfo;
if (lvImgTitle.isEmpty()) return;
orgimp = WindowManager.getImage(lvImgTitle.get(0));
imp = orgimp;
finfo = imp.getFileInfo();
if (finfo == null) return;
int[] dims = imp.getDimensions();
int imageW = dims[0];
int imageH = dims[1];
int nCh = dims[2];
int imageD = dims[3];
int nFrame = dims[4];
int bdepth = imp.getBitDepth();
double xspc = finfo.pixelWidth;
double yspc = finfo.pixelHeight;
double zspc = finfo.pixelDepth;
double z_aspect = Math.max(xspc, yspc) / zspc;
int orgW = imageW;
int orgH = imageH;
int orgD = imageD;
double orgxspc = xspc;
double orgyspc = yspc;
double orgzspc = zspc;
lv = lvImgTitle.size();
if (filetype == "JPEG") {
for (int l = 0; l < lv; l++) {
if (WindowManager.getImage(lvImgTitle.get(l)).getBitDepth() != 8) {
IJ.error("A SOURCE IMAGE MUST BE 8BIT GLAYSCALE");
return;
}
}
}
// calculate levels
/* int baseXY = 256;
int baseZ = 256;
if (z_aspect < 0.5) baseZ = 128;
if (z_aspect > 2.0) baseXY = 128;
if (z_aspect >= 0.5 && z_aspect < 1.0) baseZ = (int)(baseZ*z_aspect);
if (z_aspect > 1.0 && z_aspect <= 2.0) baseXY = (int)(baseXY/z_aspect);
IJ.log("Z_aspect: " + z_aspect);
IJ.log("BaseXY: " + baseXY);
IJ.log("BaseZ: " + baseZ);
*/
int baseXY = 256;
int baseZ = 128;
int dbXY = Math.max(orgW, orgH) / baseXY;
if (Math.max(orgW, orgH) % baseXY > 0) dbXY *= 2;
int dbZ = orgD / baseZ;
if (orgD % baseZ > 0) dbZ *= 2;
lv = Math.max(log2(dbXY), log2(dbZ)) + 1;
int ww = orgW;
int hh = orgH;
int dd = orgD;
for (int l = 0; l < lv; l++) {
int bwnum = ww / baseXY;
if (ww % baseXY > 0) bwnum++;
int bhnum = hh / baseXY;
if (hh % baseXY > 0) bhnum++;
int bdnum = dd / baseZ;
if (dd % baseZ > 0) bdnum++;
if (bwnum % 2 == 0) bwnum++;
if (bhnum % 2 == 0) bhnum++;
if (bdnum % 2 == 0) bdnum++;
int bw = (bwnum <= 1) ? ww : ww / bwnum + 1 + (ww % bwnum > 0 ? 1 : 0);
int bh = (bhnum <= 1) ? hh : hh / bhnum + 1 + (hh % bhnum > 0 ? 1 : 0);
int bd = (bdnum <= 1) ? dd : dd / bdnum + 1 + (dd % bdnum > 0 ? 1 : 0);
bwlist.add(bw);
bhlist.add(bh);
bdlist.add(bd);
IJ.log("LEVEL: " + l);
IJ.log(" width: " + ww);
IJ.log(" hight: " + hh);
IJ.log(" depth: " + dd);
IJ.log(" bw: " + bw);
IJ.log(" bh: " + bh);
IJ.log(" bd: " + bd);
int xyl2 = Math.max(ww, hh) / baseXY;
if (Math.max(ww, hh) % baseXY > 0) xyl2 *= 2;
if (lv - 1 - log2(xyl2) <= l) {
ww /= 2;
hh /= 2;
}
IJ.log(" xyl2: " + (lv - 1 - log2(xyl2)));
int zl2 = dd / baseZ;
if (dd % baseZ > 0) zl2 *= 2;
if (lv - 1 - log2(zl2) <= l) dd /= 2;
IJ.log(" zl2: " + (lv - 1 - log2(zl2)));
if (l < lv - 1) {
lvImgTitle.add(lvImgTitle.get(0) + "_level" + (l + 1));
IJ.selectWindow(lvImgTitle.get(0));
IJ.run(
"Scale...",
"x=- y=- z=- width="
+ ww
+ " height="
+ hh
+ " depth="
+ dd
+ " interpolation=Bicubic average process create title="
+ lvImgTitle.get(l + 1));
}
}
for (int l = 0; l < lv; l++) {
IJ.log(lvImgTitle.get(l));
}
Document doc = newXMLDocument();
Element root = doc.createElement("BRK");
root.setAttribute("version", "1.0");
root.setAttribute("nLevel", String.valueOf(lv));
root.setAttribute("nChannel", String.valueOf(nCh));
root.setAttribute("nFrame", String.valueOf(nFrame));
doc.appendChild(root);
for (int l = 0; l < lv; l++) {
IJ.showProgress(0.0);
int[] dims2 = imp.getDimensions();
IJ.log(
"W: "
+ String.valueOf(dims2[0])
+ " H: "
+ String.valueOf(dims2[1])
+ " C: "
+ String.valueOf(dims2[2])
+ " D: "
+ String.valueOf(dims2[3])
+ " T: "
+ String.valueOf(dims2[4])
+ " b: "
+ String.valueOf(bdepth));
bw = bwlist.get(l).intValue();
bh = bhlist.get(l).intValue();
bd = bdlist.get(l).intValue();
boolean force_pow2 = false;
/* if(IsPowerOf2(bw) && IsPowerOf2(bh) && IsPowerOf2(bd)) force_pow2 = true;
if(force_pow2){
//force pow2
if(Pow2(bw) > bw) bw = Pow2(bw)/2;
if(Pow2(bh) > bh) bh = Pow2(bh)/2;
if(Pow2(bd) > bd) bd = Pow2(bd)/2;
}
if(bw > imageW) bw = (Pow2(imageW) == imageW) ? imageW : Pow2(imageW)/2;
if(bh > imageH) bh = (Pow2(imageH) == imageH) ? imageH : Pow2(imageH)/2;
if(bd > imageD) bd = (Pow2(imageD) == imageD) ? imageD : Pow2(imageD)/2;
*/
if (bw > imageW) bw = imageW;
if (bh > imageH) bh = imageH;
if (bd > imageD) bd = imageD;
if (bw <= 1 || bh <= 1 || bd <= 1) break;
if (filetype == "JPEG" && (bw < 8 || bh < 8)) break;
Element lvnode = doc.createElement("Level");
lvnode.setAttribute("lv", String.valueOf(l));
lvnode.setAttribute("imageW", String.valueOf(imageW));
lvnode.setAttribute("imageH", String.valueOf(imageH));
lvnode.setAttribute("imageD", String.valueOf(imageD));
lvnode.setAttribute("xspc", String.valueOf(xspc));
lvnode.setAttribute("yspc", String.valueOf(yspc));
lvnode.setAttribute("zspc", String.valueOf(zspc));
lvnode.setAttribute("bitDepth", String.valueOf(bdepth));
root.appendChild(lvnode);
Element brksnode = doc.createElement("Bricks");
brksnode.setAttribute("brick_baseW", String.valueOf(bw));
brksnode.setAttribute("brick_baseH", String.valueOf(bh));
brksnode.setAttribute("brick_baseD", String.valueOf(bd));
lvnode.appendChild(brksnode);
ArrayList<Brick> bricks = new ArrayList<Brick>();
int mw, mh, md, mw2, mh2, md2;
double tx0, ty0, tz0, tx1, ty1, tz1;
double bx0, by0, bz0, bx1, by1, bz1;
for (int k = 0; k < imageD; k += bd) {
if (k > 0) k--;
for (int j = 0; j < imageH; j += bh) {
if (j > 0) j--;
for (int i = 0; i < imageW; i += bw) {
if (i > 0) i--;
mw = Math.min(bw, imageW - i);
mh = Math.min(bh, imageH - j);
md = Math.min(bd, imageD - k);
if (force_pow2) {
mw2 = Pow2(mw);
mh2 = Pow2(mh);
md2 = Pow2(md);
} else {
mw2 = mw;
mh2 = mh;
md2 = md;
}
if (filetype == "JPEG") {
if (mw2 < 8) mw2 = 8;
if (mh2 < 8) mh2 = 8;
}
tx0 = i == 0 ? 0.0d : ((mw2 - mw + 0.5d) / mw2);
ty0 = j == 0 ? 0.0d : ((mh2 - mh + 0.5d) / mh2);
tz0 = k == 0 ? 0.0d : ((md2 - md + 0.5d) / md2);
tx1 = 1.0d - 0.5d / mw2;
if (mw < bw) tx1 = 1.0d;
if (imageW - i == bw) tx1 = 1.0d;
ty1 = 1.0d - 0.5d / mh2;
if (mh < bh) ty1 = 1.0d;
if (imageH - j == bh) ty1 = 1.0d;
tz1 = 1.0d - 0.5d / md2;
if (md < bd) tz1 = 1.0d;
if (imageD - k == bd) tz1 = 1.0d;
bx0 = i == 0 ? 0.0d : (i + 0.5d) / (double) imageW;
by0 = j == 0 ? 0.0d : (j + 0.5d) / (double) imageH;
bz0 = k == 0 ? 0.0d : (k + 0.5d) / (double) imageD;
bx1 = Math.min((i + bw - 0.5d) / (double) imageW, 1.0d);
if (imageW - i == bw) bx1 = 1.0d;
by1 = Math.min((j + bh - 0.5d) / (double) imageH, 1.0d);
if (imageH - j == bh) by1 = 1.0d;
bz1 = Math.min((k + bd - 0.5d) / (double) imageD, 1.0d);
if (imageD - k == bd) bz1 = 1.0d;
int x, y, z;
x = i - (mw2 - mw);
y = j - (mh2 - mh);
z = k - (md2 - md);
bricks.add(
new Brick(
x, y, z, mw2, mh2, md2, 0, 0, tx0, ty0, tz0, tx1, ty1, tz1, bx0, by0, bz0, bx1,
by1, bz1));
}
}
}
Element fsnode = doc.createElement("Files");
lvnode.appendChild(fsnode);
stack = imp.getStack();
int totalbricknum = nFrame * nCh * bricks.size();
int curbricknum = 0;
for (int f = 0; f < nFrame; f++) {
for (int ch = 0; ch < nCh; ch++) {
int sizelimit = bdsizelimit * 1024 * 1024;
int bytecount = 0;
int filecount = 0;
int pd_bufsize = Math.max(sizelimit, bw * bh * bd * bdepth / 8);
byte[] packed_data = new byte[pd_bufsize];
String base_dataname =
basename
+ "_Lv"
+ String.valueOf(l)
+ "_Ch"
+ String.valueOf(ch)
+ "_Fr"
+ String.valueOf(f);
String current_dataname = base_dataname + "_data" + filecount;
Brick b_first = bricks.get(0);
if (b_first.z_ != 0) IJ.log("warning");
int st_z = b_first.z_;
int ed_z = b_first.z_ + b_first.d_;
LinkedList<ImageProcessor> iplist = new LinkedList<ImageProcessor>();
for (int s = st_z; s < ed_z; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
// ImagePlus test;
// ImageStack tsst;
// test = NewImage.createByteImage("test", imageW, imageH, imageD,
// NewImage.FILL_BLACK);
// tsst = test.getStack();
for (int i = 0; i < bricks.size(); i++) {
Brick b = bricks.get(i);
if (ed_z > b.z_ || st_z < b.z_ + b.d_) {
if (b.z_ > st_z) {
for (int s = 0; s < b.z_ - st_z; s++) iplist.pollFirst();
st_z = b.z_;
} else if (b.z_ < st_z) {
IJ.log("warning");
for (int s = st_z - 1; s > b.z_; s--)
iplist.addFirst(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
st_z = b.z_;
}
if (b.z_ + b.d_ > ed_z) {
for (int s = ed_z; s < b.z_ + b.d_; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
ed_z = b.z_ + b.d_;
} else if (b.z_ + b.d_ < ed_z) {
IJ.log("warning");
for (int s = 0; s < ed_z - (b.z_ + b.d_); s++) iplist.pollLast();
ed_z = b.z_ + b.d_;
}
} else {
IJ.log("warning");
iplist.clear();
st_z = b.z_;
ed_z = b.z_ + b.d_;
for (int s = st_z; s < ed_z; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
}
if (iplist.size() != b.d_) {
IJ.log("Stack Error");
return;
}
// int zz = st_z;
int bsize = 0;
byte[] bdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
Iterator<ImageProcessor> ipite = iplist.iterator();
while (ipite.hasNext()) {
// ImageProcessor tsip = tsst.getProcessor(zz+1);
ImageProcessor ip = ipite.next();
ip.setRoi(b.x_, b.y_, b.w_, b.h_);
if (bdepth == 8) {
byte[] data = (byte[]) ip.crop().getPixels();
System.arraycopy(data, 0, bdata, bsize, data.length);
bsize += data.length;
} else if (bdepth == 16) {
ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
buffer.order(ByteOrder.LITTLE_ENDIAN);
short[] data = (short[]) ip.crop().getPixels();
for (short e : data) buffer.putShort(e);
System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
bsize += buffer.array().length;
} else if (bdepth == 32) {
ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
buffer.order(ByteOrder.LITTLE_ENDIAN);
float[] data = (float[]) ip.crop().getPixels();
for (float e : data) buffer.putFloat(e);
System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
bsize += buffer.array().length;
}
}
String filename =
basename
+ "_Lv"
+ String.valueOf(l)
+ "_Ch"
+ String.valueOf(ch)
+ "_Fr"
+ String.valueOf(f)
+ "_ID"
+ String.valueOf(i);
int offset = bytecount;
int datasize = bdata.length;
if (filetype == "RAW") {
int dummy = -1;
// do nothing
}
if (filetype == "JPEG" && bdepth == 8) {
try {
DataBufferByte db = new DataBufferByte(bdata, datasize);
Raster raster = Raster.createPackedRaster(db, b.w_, b.h_ * b.d_, 8, null);
BufferedImage img =
new BufferedImage(b.w_, b.h_ * b.d_, BufferedImage.TYPE_BYTE_GRAY);
img.setData(raster);
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ImageOutputStream ios = ImageIO.createImageOutputStream(baos);
String format = "jpg";
Iterator<javax.imageio.ImageWriter> iter =
ImageIO.getImageWritersByFormatName("jpeg");
javax.imageio.ImageWriter writer = iter.next();
ImageWriteParam iwp = writer.getDefaultWriteParam();
iwp.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
iwp.setCompressionQuality((float) jpeg_quality * 0.01f);
writer.setOutput(ios);
writer.write(null, new IIOImage(img, null, null), iwp);
// ImageIO.write(img, format, baos);
bdata = baos.toByteArray();
datasize = bdata.length;
} catch (IOException e) {
e.printStackTrace();
return;
}
}
if (filetype == "ZLIB") {
byte[] tmpdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
Deflater compresser = new Deflater();
compresser.setInput(bdata);
compresser.setLevel(Deflater.DEFAULT_COMPRESSION);
compresser.setStrategy(Deflater.DEFAULT_STRATEGY);
compresser.finish();
datasize = compresser.deflate(tmpdata);
bdata = tmpdata;
compresser.end();
}
if (bytecount + datasize > sizelimit && bytecount > 0) {
BufferedOutputStream fis = null;
try {
File file = new File(directory + current_dataname);
fis = new BufferedOutputStream(new FileOutputStream(file));
fis.write(packed_data, 0, bytecount);
} catch (IOException e) {
e.printStackTrace();
return;
} finally {
try {
if (fis != null) fis.close();
} catch (IOException e) {
e.printStackTrace();
return;
}
}
filecount++;
current_dataname = base_dataname + "_data" + filecount;
bytecount = 0;
offset = 0;
System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
bytecount += datasize;
} else {
System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
bytecount += datasize;
}
Element filenode = doc.createElement("File");
filenode.setAttribute("filename", current_dataname);
filenode.setAttribute("channel", String.valueOf(ch));
filenode.setAttribute("frame", String.valueOf(f));
filenode.setAttribute("brickID", String.valueOf(i));
filenode.setAttribute("offset", String.valueOf(offset));
filenode.setAttribute("datasize", String.valueOf(datasize));
filenode.setAttribute("filetype", String.valueOf(filetype));
fsnode.appendChild(filenode);
curbricknum++;
IJ.showProgress((double) (curbricknum) / (double) (totalbricknum));
}
if (bytecount > 0) {
BufferedOutputStream fis = null;
try {
File file = new File(directory + current_dataname);
fis = new BufferedOutputStream(new FileOutputStream(file));
fis.write(packed_data, 0, bytecount);
} catch (IOException e) {
e.printStackTrace();
return;
} finally {
try {
if (fis != null) fis.close();
} catch (IOException e) {
e.printStackTrace();
return;
}
}
}
}
}
for (int i = 0; i < bricks.size(); i++) {
Brick b = bricks.get(i);
Element bricknode = doc.createElement("Brick");
bricknode.setAttribute("id", String.valueOf(i));
bricknode.setAttribute("st_x", String.valueOf(b.x_));
bricknode.setAttribute("st_y", String.valueOf(b.y_));
bricknode.setAttribute("st_z", String.valueOf(b.z_));
bricknode.setAttribute("width", String.valueOf(b.w_));
bricknode.setAttribute("height", String.valueOf(b.h_));
bricknode.setAttribute("depth", String.valueOf(b.d_));
brksnode.appendChild(bricknode);
Element tboxnode = doc.createElement("tbox");
tboxnode.setAttribute("x0", String.valueOf(b.tx0_));
tboxnode.setAttribute("y0", String.valueOf(b.ty0_));
tboxnode.setAttribute("z0", String.valueOf(b.tz0_));
tboxnode.setAttribute("x1", String.valueOf(b.tx1_));
tboxnode.setAttribute("y1", String.valueOf(b.ty1_));
tboxnode.setAttribute("z1", String.valueOf(b.tz1_));
bricknode.appendChild(tboxnode);
Element bboxnode = doc.createElement("bbox");
bboxnode.setAttribute("x0", String.valueOf(b.bx0_));
bboxnode.setAttribute("y0", String.valueOf(b.by0_));
bboxnode.setAttribute("z0", String.valueOf(b.bz0_));
bboxnode.setAttribute("x1", String.valueOf(b.bx1_));
bboxnode.setAttribute("y1", String.valueOf(b.by1_));
bboxnode.setAttribute("z1", String.valueOf(b.bz1_));
bricknode.appendChild(bboxnode);
}
if (l < lv - 1) {
imp = WindowManager.getImage(lvImgTitle.get(l + 1));
int[] newdims = imp.getDimensions();
imageW = newdims[0];
imageH = newdims[1];
imageD = newdims[3];
xspc = orgxspc * ((double) orgW / (double) imageW);
yspc = orgyspc * ((double) orgH / (double) imageH);
zspc = orgzspc * ((double) orgD / (double) imageD);
bdepth = imp.getBitDepth();
}
}
File newXMLfile = new File(directory + basename + ".vvd");
writeXML(newXMLfile, doc);
for (int l = 1; l < lv; l++) {
imp = WindowManager.getImage(lvImgTitle.get(l));
imp.changes = false;
imp.close();
}
}
/**
* Same function as in GLApp.java. Allocates a ByteBuffer to hold the given array of bytes.
*
* @param bytearray
* @return ByteBuffer containing the contents of the byte array
*/
public static ByteBuffer allocBytes(byte[] bytearray) {
ByteBuffer bb = ByteBuffer.allocateDirect(bytearray.length).order(ByteOrder.nativeOrder());
bb.put(bytearray).flip();
return bb;
}
/**
* Sets the data
*
* @param buffer Bytebuffer holding the data
*/
public void set(ByteBuffer buffer) {
health = buffer.getInt();
}