/** Method declaration */
private void initGUI() {
Panel pQuery = new Panel();
Panel pCommand = new Panel();
pResult = new Panel();
pQuery.setLayout(new BorderLayout());
pCommand.setLayout(new BorderLayout());
pResult.setLayout(new BorderLayout());
Font fFont = new Font("Dialog", Font.PLAIN, 12);
txtCommand = new TextArea(5, 40);
txtCommand.addKeyListener(this);
txtResult = new TextArea(20, 40);
txtCommand.setFont(fFont);
txtResult.setFont(new Font("Courier", Font.PLAIN, 12));
butExecute = new Button("Execute");
butClear = new Button("Clear");
butExecute.addActionListener(this);
butClear.addActionListener(this);
pCommand.add("East", butExecute);
pCommand.add("West", butClear);
pCommand.add("Center", txtCommand);
gResult = new Grid();
setLayout(new BorderLayout());
pResult.add("Center", gResult);
pQuery.add("North", pCommand);
pQuery.add("Center", pResult);
fMain.add("Center", pQuery);
tTree = new Tree();
// (ulrivo): screen with less than 640 width
Dimension d = Toolkit.getDefaultToolkit().getScreenSize();
if (d.width >= 640) {
tTree.setMinimumSize(new Dimension(200, 100));
} else {
tTree.setMinimumSize(new Dimension(80, 100));
}
gResult.setMinimumSize(new Dimension(200, 300));
fMain.add("West", tTree);
doLayout();
fMain.pack();
}
private MutableTreeNode populateTree(Tree t) throws SQLException {
DefaultMutableTreeNode tree = new DefaultMutableTreeNode(t);
// tree.add(populateAttributes(t));
Statement stmt = db.statement();
for (Cavity c : t.loadCavities(stmt)) {
tree.add(populateCavity(c));
}
stmt.close();
return tree;
}
/**
* Method declaration
*
* @param ev
*/
public void actionPerformed(ActionEvent ev) {
String s = ev.getActionCommand();
if (s == null) {
if (ev.getSource() instanceof MenuItem) {
MenuItem i;
s = ((MenuItem) ev.getSource()).getLabel();
}
}
if (s.equals("Execute")) {
execute();
} else if (s.equals("Exit")) {
windowClosing(null);
} else if (s.equals("Transfer")) {
Transfer.work(null);
} else if (s.equals("Dump")) {
Transfer.work(new String[] {"-d"});
/* NB - 26052002 Restore is not implemented yet in the transfer tool */
/*
} else if (s.equals("Restore")) {
Transfer.work(new String[]{"-r"});
*/
} else if (s.equals("Logging on")) {
jdbcSystem.setLogToSystem(true);
} else if (s.equals("Logging off")) {
jdbcSystem.setLogToSystem(false);
} else if (s.equals("Refresh Tree")) {
refreshTree();
} else if (s.startsWith("#")) {
int i = Integer.parseInt(s.substring(1));
txtCommand.setText(sRecent[i]);
} else if (s.equals("Connect...")) {
connect(ConnectionDialog.createConnection(fMain, "Connect"));
refreshTree();
} else if (s.equals("Results in Grid")) {
iResult = 0;
pResult.removeAll();
pResult.add("Center", gResult);
pResult.doLayout();
} else if (s.equals("Open Script...")) {
FileDialog f = new FileDialog(fMain, "Open Script", FileDialog.LOAD);
// (ulrivo): set default directory if set from command line
if (defDirectory != null) {
f.setDirectory(defDirectory);
}
f.show();
String file = f.getFile();
if (file != null) {
txtCommand.setText(DatabaseManagerCommon.readFile(f.getDirectory() + file));
}
} else if (s.equals("Save Script...")) {
FileDialog f = new FileDialog(fMain, "Save Script", FileDialog.SAVE);
// (ulrivo): set default directory if set from command line
if (defDirectory != null) {
f.setDirectory(defDirectory);
}
f.show();
String file = f.getFile();
if (file != null) {
DatabaseManagerCommon.writeFile(f.getDirectory() + file, txtCommand.getText());
}
} else if (s.equals("Save Result...")) {
FileDialog f = new FileDialog(fMain, "Save Result", FileDialog.SAVE);
// (ulrivo): set default directory if set from command line
if (defDirectory != null) {
f.setDirectory(defDirectory);
}
f.show();
String file = f.getFile();
if (file != null) {
showResultInText();
DatabaseManagerCommon.writeFile(f.getDirectory() + file, txtResult.getText());
}
} else if (s.equals("Results in Text")) {
iResult = 1;
pResult.removeAll();
pResult.add("Center", txtResult);
pResult.doLayout();
showResultInText();
} else if (s.equals("AutoCommit on")) {
try {
cConn.setAutoCommit(true);
} catch (SQLException e) {
}
} else if (s.equals("AutoCommit off")) {
try {
cConn.setAutoCommit(false);
} catch (SQLException e) {
}
} else if (s.equals("Enlarge Tree")) {
Dimension d = tTree.getMinimumSize();
d.width += 20;
tTree.setMinimumSize(d);
fMain.pack();
} else if (s.equals("Shrink Tree")) {
Dimension d = tTree.getMinimumSize();
d.width -= 20;
if (d.width >= 0) {
tTree.setMinimumSize(d);
}
fMain.pack();
} else if (s.equals("Enlarge Command")) {
txtCommand.setRows(txtCommand.getRows() + 1);
fMain.pack();
} else if (s.equals("Shrink Command")) {
int i = txtCommand.getRows() - 1;
txtCommand.setRows(i < 1 ? 1 : i);
fMain.pack();
} else if (s.equals("Commit")) {
try {
cConn.commit();
} catch (SQLException e) {
}
} else if (s.equals("Insert test data")) {
insertTestData();
} else if (s.equals("Rollback")) {
try {
cConn.rollback();
} catch (SQLException e) {
}
} else if (s.equals("Disable MaxRows")) {
try {
sStatement.setMaxRows(0);
} catch (SQLException e) {
}
} else if (s.equals("Set MaxRows to 100")) {
try {
sStatement.setMaxRows(100);
} catch (SQLException e) {
}
} else if (s.equals("SELECT")) {
showHelp(DatabaseManagerCommon.selectHelp);
} else if (s.equals("INSERT")) {
showHelp(DatabaseManagerCommon.insertHelp);
} else if (s.equals("UPDATE")) {
showHelp(DatabaseManagerCommon.updateHelp);
} else if (s.equals("DELETE")) {
showHelp(DatabaseManagerCommon.deleteHelp);
} else if (s.equals("CREATE TABLE")) {
showHelp(DatabaseManagerCommon.createTableHelp);
} else if (s.equals("DROP TABLE")) {
showHelp(DatabaseManagerCommon.dropTableHelp);
} else if (s.equals("CREATE INDEX")) {
showHelp(DatabaseManagerCommon.createIndexHelp);
} else if (s.equals("DROP INDEX")) {
showHelp(DatabaseManagerCommon.dropIndexHelp);
} else if (s.equals("CHECKPOINT")) {
showHelp(DatabaseManagerCommon.checkpointHelp);
} else if (s.equals("SCRIPT")) {
showHelp(DatabaseManagerCommon.scriptHelp);
} else if (s.equals("SHUTDOWN")) {
showHelp(DatabaseManagerCommon.shutdownHelp);
} else if (s.equals("SET")) {
showHelp(DatabaseManagerCommon.setHelp);
} else if (s.equals("Test Script")) {
showHelp(DatabaseManagerCommon.testHelp);
}
}
/** Method declaration */
private void refreshTree() {
tTree.removeAll();
try {
int color_table = Color.yellow.getRGB();
int color_column = Color.orange.getRGB();
int color_index = Color.red.getRGB();
tTree.addRow("", dMeta.getURL(), "-", 0);
String usertables[] = {"TABLE"};
ResultSet result = dMeta.getTables(null, null, null, usertables);
Vector tables = new Vector();
// sqlbob@users Added remarks.
Vector remarks = new Vector();
while (result.next()) {
tables.addElement(result.getString(3));
remarks.addElement(result.getString(5));
}
result.close();
for (int i = 0; i < tables.size(); i++) {
String name = (String) tables.elementAt(i);
String key = "tab-" + name + "-";
tTree.addRow(key, name, "+", color_table);
// sqlbob@users Added remarks.
String remark = (String) remarks.elementAt(i);
if ((remark != null) && !remark.trim().equals("")) {
tTree.addRow(key + "r", " " + remark);
}
ResultSet col = dMeta.getColumns(null, null, name, null);
while (col.next()) {
String c = col.getString(4);
String k1 = key + "col-" + c + "-";
tTree.addRow(k1, c, "+", color_column);
String type = col.getString(6);
tTree.addRow(k1 + "t", "Type: " + type);
boolean nullable = col.getInt(11) != DatabaseMetaData.columnNoNulls;
tTree.addRow(k1 + "n", "Nullable: " + nullable);
}
col.close();
tTree.addRow(key + "ind", "Indices", "+", 0);
ResultSet ind = dMeta.getIndexInfo(null, null, name, false, false);
String oldiname = null;
while (ind.next()) {
boolean nonunique = ind.getBoolean(4);
String iname = ind.getString(6);
String k2 = key + "ind-" + iname + "-";
if ((oldiname == null || !oldiname.equals(iname))) {
tTree.addRow(k2, iname, "+", color_index);
tTree.addRow(k2 + "u", "Unique: " + !nonunique);
oldiname = iname;
}
String c = ind.getString(9);
tTree.addRow(k2 + "c-" + c + "-", c);
}
ind.close();
}
tTree.addRow("p", "Properties", "+", 0);
tTree.addRow("pu", "User: "******"pr", "ReadOnly: " + cConn.isReadOnly());
tTree.addRow("pa", "AutoCommit: " + cConn.getAutoCommit());
tTree.addRow("pd", "Driver: " + dMeta.getDriverName());
tTree.addRow("pp", "Product: " + dMeta.getDatabaseProductName());
tTree.addRow("pv", "Version: " + dMeta.getDatabaseProductVersion());
} catch (SQLException e) {
tTree.addRow("", "Error getting metadata:", "-", 0);
tTree.addRow("-", e.getMessage());
tTree.addRow("-", e.getSQLState());
}
tTree.update();
}
/*.................................................................................................................*/
public Tree retrieveTreeBlock(TreeVector treeList, MesquiteDouble finalScore) {
logln("Preparing to receive TNT trees.");
boolean success = false;
taxa = treeList.getTaxa();
// TODO finalScore.setValue(finalValue);
suppressProjectPanelReset();
CommandRecord oldCR = MesquiteThread.getCurrentCommandRecord();
CommandRecord scr = new CommandRecord(true);
MesquiteThread.setCurrentCommandRecord(scr);
// define file paths and set tree files as needed.
setFileNames();
String[] outputFilePaths = externalProcRunner.getOutputFilePaths();
String treeFilePath = outputFilePaths[OUT_TREEFILE];
taxonNumberTranslation = getTaxonNumberTranslation(taxa);
namer.setNumberTranslationTable(taxonNumberTranslation);
runFilesAvailable();
// read in the tree files
success = false;
Tree t = null;
MesquiteBoolean readSuccess = new MesquiteBoolean(false);
// TreeVector tv = new TreeVector(taxa);
if (bootstrapOrJackknife()) {
if (resamplingAllConsensusTrees)
t =
ZephyrUtil.readTNTTreeFile(
this,
treeList,
taxa,
treeFilePath,
"TNT " + getResamplingKindName() + " Rep",
0,
readSuccess,
false,
false,
null,
namer); // set first tree number as 0 as will remove the first one later.
else
t =
ZephyrUtil.readTNTTreeFile(
this,
treeList,
taxa,
treeFilePath,
"TNT " + getResamplingKindName() + " Majority Rule Tree",
1,
readSuccess,
false,
false,
freqRef,
namer);
} else
t =
ZephyrUtil.readTNTTreeFile(
this,
treeList,
taxa,
treeFilePath,
"TNTTree",
1,
readSuccess,
false,
harvestOnlyStrictConsensus,
null,
namer);
success = t != null;
if (success && bootstrapOrJackknife() && resamplingAllConsensusTrees) {
t = t.cloneTree();
treeList.removeElementAt(0, false); // get rid of first one as this is the bootstrap tree
}
MesquiteThread.setCurrentCommandRecord(oldCR);
success = readSuccess.getValue();
if (!success) {
logln("Execution of TNT unsuccessful [2]");
if (!beanWritten) postBean("unsuccessful [2]", false);
beanWritten = true;
} else {
if (!beanWritten) postBean("successful", false);
beanWritten = true;
}
desuppressProjectPanelReset();
if (data != null) data.decrementEditInhibition();
// manager.deleteElement(tv); // get rid of temporary tree block
externalProcRunner.finalCleanup();
if (success) return t;
return null;
}