public ArchiveorigParam(BaseManager manager, AxisID axisID) {
this.manager = manager;
if (axisID == AxisID.FIRST) {
mode = Mode.AXIS_A;
} else if (axisID == AxisID.SECOND) {
mode = Mode.AXIS_B;
}
File stack = Utilities.getFile(manager, false, axisID, DatasetTool.STANDARD_DATASET_EXT, "");
commandArray =
new String[] {
"python", "-u", BaseManager.getIMODBinPath() + COMMAND_NAME, "-PID", stack.getName()
};
outputFile = Utilities.getFile(manager, false, axisID, "_xray.st.gz", "");
}
public void testBeadtrack() throws FileNotFoundException, IOException, LogFile.LockException {
// TEMP
if (Utilities.isWindowsOS()) {
return;
}
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(manager, AutodocFactory.BEADTRACK, AxisID.ONLY, false);
assertFalse(autodoc.isError());
}
public void testCpu()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
if (Utilities.isWindowsOS()) {
return;
}
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(
manager,
TestUtilites.INSTANCE.copyTestFile(
AutodocTests.TEST_ROOT_DIR.getAbsolutePath(), TEST_DIR_NAME, "cpu.adoc"),
false);
assertFalse(autodoc.isError());
}
public void logMessage(Loggable loggable, AxisID axisID) {
if (loggable == null) {
return;
}
try {
SwingUtilities.invokeLater(
new AppendLater(
Utilities.getDateTimeStamp(), loggable.getName(), loggable.getLogMessage(), axisID));
} catch (LogFile.LockException e) {
e.printStackTrace();
SwingUtilities.invokeLater(new AppendLater("Unable to log message:", e.getMessage()));
} catch (IOException e) {
e.printStackTrace();
SwingUtilities.invokeLater(new AppendLater("Unable to log message:", e.getMessage()));
}
}
public void testSimple()
throws LogFile.LockException, IOException, SystemProcessException, InvalidParameterException {
if (Utilities.isWindowsOS()) {
return;
}
ReadOnlyAutodoc autodoc =
AutodocFactory.getInstance(
manager,
TestUtilites.INSTANCE.copyTestFile(
AutodocTests.TEST_ROOT_DIR.getAbsolutePath(), TEST_DIR_NAME, "simple.adoc"),
false);
// only use with getTestInstance
// autodoc.runInternalTest(AutodocFactory.InternalTestType.PARSER,false,false);
// only use with getInstance
// autodoc.printStoredData();
assertFalse(autodoc.isError());
}
public void logMessage(final String message, final boolean timestamp, final boolean newline) {
SwingUtilities.invokeLater(
new AppendLater((timestamp ? Utilities.getDateTimeStamp() : null), message, newline));
}
public void logMessage(final String message) {
SwingUtilities.invokeLater(new AppendLater(Utilities.getDateTimeStamp(), message));
}
public void logMessage(final String title, final AxisID axisID) {
SwingUtilities.invokeLater(new AppendLater(Utilities.getDateTimeStamp(), title, axisID));
}
public void logMessage(final AxisID axisID, final ArrayList<String> message) {
SwingUtilities.invokeLater(new AppendLater(Utilities.getDateTimeStamp(), message, axisID));
}
public void logMessage(String title, AxisID axisID, String[] message) {
SwingUtilities.invokeLater(new AppendLater(Utilities.getDateTimeStamp(), title, message));
}
public void logMessage(String line1, String line2) {
SwingUtilities.invokeLater(new AppendLater(Utilities.getDateTimeStamp(), line1, line2));
}