@Override
protected Align clone() {
Align a = new Align();
a.indexInAlignment = indexInAlignment;
a.hit_index = hit_index;
a.query_index = query_index;
return a;
}
MyIterator() {
curr = new Align();
curr.query_index = owner().getQueryFrom1();
curr.hit_index = owner().getHitFrom1();
curr.indexInAlignment = 0;
}
