@Override protected Align clone() { Align a = new Align(); a.indexInAlignment = indexInAlignment; a.hit_index = hit_index; a.query_index = query_index; return a; }
MyIterator() { curr = new Align(); curr.query_index = owner().getQueryFrom1(); curr.hit_index = owner().getHitFrom1(); curr.indexInAlignment = 0; }