Exemplo n.º 1
0
 @Test
 public void testEqualsIndexSequence() {
   frag.setIndexSequence("ABC");
   assertFalse(frag.equals(frag2));
   frag2.setIndexSequence("ABC");
   assertTrue(frag.equals(frag2));
 }
Exemplo n.º 2
0
  @Test
  public void testSerializationWithFields() throws IOException {
    frag.setSequence(new Text("AGTAGTAGTAGTAGTAGTAGTAGTAGTAGT"));
    frag.setQuality(new Text("BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB"));

    frag.setInstrument("machine");
    frag.setLane(3);
    frag.setRead(1);
    frag.setIndexSequence("CAT");

    assertEquals(frag, cloneBySerialization(frag));
  }
Exemplo n.º 3
0
  @Test
  public void testToString() {
    String seq = "AGTAGTAGTAGTAGTAGTAGTAGTAGTAGT";
    String qual = "##############################";
    frag.setSequence(new Text(seq));
    frag.setQuality(new Text(qual));

    frag.setInstrument("machine");
    frag.setRunNumber(123);
    frag.setFlowcellId("flowcell");
    frag.setLane(3);
    frag.setTile(1001);
    frag.setXpos(1234);
    frag.setYpos(4321);
    frag.setIndexSequence("CAT");
    frag.setRead(1);

    assertEquals(
        "machine\t123\tflowcell\t3\t1001\t1234\t4321\tCAT\t1\t" + seq + "\t" + qual + "\t1",
        frag.toString());
  }