@Test
public void testEqualsIndexSequence() {
frag.setIndexSequence("ABC");
assertFalse(frag.equals(frag2));
frag2.setIndexSequence("ABC");
assertTrue(frag.equals(frag2));
}
@Test
public void testSerializationWithFields() throws IOException {
frag.setSequence(new Text("AGTAGTAGTAGTAGTAGTAGTAGTAGTAGT"));
frag.setQuality(new Text("BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB"));
frag.setInstrument("machine");
frag.setLane(3);
frag.setRead(1);
frag.setIndexSequence("CAT");
assertEquals(frag, cloneBySerialization(frag));
}
@Test
public void testToString() {
String seq = "AGTAGTAGTAGTAGTAGTAGTAGTAGTAGT";
String qual = "##############################";
frag.setSequence(new Text(seq));
frag.setQuality(new Text(qual));
frag.setInstrument("machine");
frag.setRunNumber(123);
frag.setFlowcellId("flowcell");
frag.setLane(3);
frag.setTile(1001);
frag.setXpos(1234);
frag.setYpos(4321);
frag.setIndexSequence("CAT");
frag.setRead(1);
assertEquals(
"machine\t123\tflowcell\t3\t1001\t1234\t4321\tCAT\t1\t" + seq + "\t" + qual + "\t1",
frag.toString());
}