@Override
public List<ProtocolOnlineReviewDocumentBase> getProtocolReviewDocumentsForCurrentSubmission(
ProtocolBase protocol) {
List<ProtocolOnlineReviewDocumentBase> onlineReviewDocuments =
new ArrayList<ProtocolOnlineReviewDocumentBase>();
ProtocolSubmissionBase submission = protocol.getProtocolSubmission();
List<ProtocolOnlineReviewBase> reviews =
findProtocolOnlineReviews(protocol.getProtocolId(), submission.getSubmissionId());
for (ProtocolOnlineReviewBase review : reviews) {
if (review.isActive()) {
review.refresh();
try {
onlineReviewDocuments.add(
(ProtocolOnlineReviewDocumentBase)
(documentService.getByDocumentHeaderId(
review.getProtocolOnlineReviewDocument().getDocumentNumber())));
} catch (WorkflowException e) {
throw new RuntimeException(
String.format(
"Could not load ProtocolOnlineReviewBase docuemnt %s due to WorkflowException: %s",
review.getProtocolOnlineReviewDocument().getDocumentNumber(), e.getMessage()),
e);
}
}
}
return onlineReviewDocuments;
}
/*
* create the view link url for protocolsubmission
*/
protected AnchorHtmlData getViewLink(ProtocolSubmissionBase protocolSubmission) {
AnchorHtmlData viewHtmlData =
super.getViewLink(protocolSubmission.getProtocol().getProtocolDocument());
String submissionIdParam = "&submissionId=" + protocolSubmission.getSubmissionId();
String href = viewHtmlData.getHref();
href = href.replace(DOC_TYPE_NAME_PARAM, submissionIdParam + DOC_TYPE_NAME_PARAM);
viewHtmlData.setHref(href);
return viewHtmlData;
}
public ProtocolOnlineReviewDocumentBase createProtocolOnlineReviewDocument(
ProtocolSubmissionBase protocolSubmission,
ProtocolReviewer protocolReviewer,
String documentDescription,
String documentExplanation,
String documentOrganizationDocumentNumber,
Date dateRequested,
Date dateDue,
String principalId)
throws WorkflowException {
IacucProtocolOnlineReviewDocument protocolReviewDocument;
Person person = personService.getPerson(principalId);
WorkflowDocument workflowDocument =
workflowDocumentService.createWorkflowDocument(
IACUC_PROTOCOL_ONLINE_REVIEW_DOCUMENT_TYPE, person);
DocumentHeader docHeader = new DocumentHeader();
docHeader.setWorkflowDocument(workflowDocument);
docHeader.setDocumentNumber(workflowDocument.getDocumentId().toString());
protocolReviewDocument = new IacucProtocolOnlineReviewDocument();
protocolReviewDocument.setDocumentNumber(docHeader.getDocumentNumber());
protocolReviewDocument.setDocumentHeader(docHeader);
protocolReviewDocument.getProtocolOnlineReview().setProtocol(protocolSubmission.getProtocol());
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolId(protocolSubmission.getProtocolId());
protocolReviewDocument.getProtocolOnlineReview().setProtocolSubmission(protocolSubmission);
protocolReviewDocument
.getProtocolOnlineReview()
.setSubmissionIdFk(protocolSubmission.getSubmissionId());
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolOnlineReviewStatusCode(IacucProtocolOnlineReviewStatus.SAVED_STATUS_CD);
protocolReviewDocument
.getProtocolOnlineReview()
.setDateRequested(
dateRequested == null ? new Date((new java.util.Date()).getTime()) : dateRequested);
protocolReviewDocument.getProtocolOnlineReview().setDateDue(dateDue);
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolReviewerId(protocolReviewer.getProtocolReviewerId());
protocolReviewDocument.getProtocolOnlineReview().setProtocolReviewer(protocolReviewer);
docHeader.setDocumentDescription(documentDescription);
docHeader.setOrganizationDocumentNumber(documentOrganizationDocumentNumber);
docHeader.setExplanation(documentExplanation);
documentService.saveDocument(protocolReviewDocument);
return protocolReviewDocument;
}
/**
* Creates a new ProtocolReviewDocument.
*
* <p>Handles creating the workflow document, and the underlying ProtocolReview BO linking the
* protocol, submission, and reviewer.
*
* @param protocolSubmission The protocol submission
* @param protocolReviewerBean The bean that holds
* @param documentDescription the description for the created document
* @param documentExplanation the explanation for the created document
* @param documentOrganizationNumber the organizationNumber for the created document
* @param principalId The principalId to use when creating the workflow document. Usually this
* should be the principal of the user creating the review.
* @return
* @throws WorkflowException
*/
protected ProtocolOnlineReviewDocumentBase createProtocolOnlineReviewDocument(
ProtocolSubmissionBase protocolSubmission,
ProtocolReviewer protocolReviewer,
String documentDescription,
String documentExplanation,
String documentOrganizationDocumentNumber,
Date dateRequested,
Date dateDue,
String principalId)
throws WorkflowException {
ProtocolOnlineReviewDocumentBase protocolReviewDocument;
Person person = personService.getPerson(principalId);
WorkflowDocument workflowDocument =
workflowDocumentService.createWorkflowDocument(getProtocolOLRDocumentTypeHook(), person);
DocumentHeader docHeader = new DocumentHeader();
docHeader.setWorkflowDocument(workflowDocument);
docHeader.setDocumentNumber(workflowDocument.getDocumentId().toString());
protocolReviewDocument = getNewProtocolOnlineReviewDocumentInstanceHook();
protocolReviewDocument.setDocumentNumber(docHeader.getDocumentNumber());
protocolReviewDocument.setDocumentHeader(docHeader);
protocolReviewDocument.getProtocolOnlineReview().setProtocol(protocolSubmission.getProtocol());
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolId(protocolSubmission.getProtocolId());
protocolReviewDocument.getProtocolOnlineReview().setProtocolSubmission(protocolSubmission);
protocolReviewDocument
.getProtocolOnlineReview()
.setSubmissionIdFk(protocolSubmission.getSubmissionId());
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolOnlineReviewStatusCode(getProtocolOLRSavedStatusCodeHook());
protocolReviewDocument
.getProtocolOnlineReview()
.setDateRequested(
dateRequested == null ? new Date((new java.util.Date()).getTime()) : dateRequested);
protocolReviewDocument.getProtocolOnlineReview().setDateDue(dateDue);
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolReviewerId(protocolReviewer.getProtocolReviewerId());
protocolReviewDocument.getProtocolOnlineReview().setProtocolReviewer(protocolReviewer);
docHeader.setDocumentDescription(documentDescription);
docHeader.setOrganizationDocumentNumber(documentOrganizationDocumentNumber);
docHeader.setExplanation(documentExplanation);
documentService.saveDocument(protocolReviewDocument);
return protocolReviewDocument;
}
@Override
public void moveOnlineReviews(
ProtocolSubmissionBase submission, ProtocolSubmissionBase newSubmission) {
newSubmission.setProtocolOnlineReviews(new ArrayList<ProtocolOnlineReviewBase>());
for (ProtocolOnlineReviewBase review : submission.getProtocolOnlineReviews()) {
review.setProtocol(newSubmission.getProtocol());
review.setProtocolId(newSubmission.getProtocol().getProtocolId());
review.setSubmissionIdFk(newSubmission.getSubmissionId());
if (CollectionUtils.isNotEmpty(review.getCommitteeScheduleMinutes())) {
for (CommitteeScheduleMinuteBase comment : review.getCommitteeScheduleMinutes()) {
comment.setProtocolIdFk(review.getProtocolId());
comment.setScheduleIdFk(newSubmission.getScheduleIdFk());
}
}
newSubmission.getProtocolOnlineReviews().add(review);
}
}
private void performGenericAction(
Protocol protocol, ProtocolGenericActionBean actionBean, String protocolActionType)
throws Exception {
ProtocolAction protocolAction =
(ProtocolAction) createProtocolActionAndAttach(protocol, actionBean, protocolActionType);
if (protocol.getNotifyIrbSubmissionId() == null) {
getProtocolActionService().updateProtocolStatus(protocolAction, protocol);
} else {
for (ProtocolSubmissionBase submission : protocol.getProtocolSubmissions()) {
if (submission.getSubmissionId().equals(protocol.getNotifyIrbSubmissionId())) {
submission.setSubmissionStatusCode(ProtocolSubmissionStatus.IRB_ACKNOWLEDGEMENT);
}
}
}
protocol.refreshReferenceObject("protocolStatus");
protocol.refreshReferenceObject("protocolSubmission");
getDocumentService().saveDocument(protocol.getProtocolDocument());
}
@Override
public ProtocolOnlineReviewDocumentBase getProtocolOnlineReviewDocument(
String personId, boolean nonEmployeeFlag, ProtocolSubmissionBase protocolSubmission) {
ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument = null;
if (protocolSubmission != null) {
for (ProtocolOnlineReviewBase protocolOnlineReview :
protocolSubmission.getProtocolOnlineReviews()) {
if (protocolOnlineReview
.getProtocolReviewer()
.isPersonIdProtocolReviewer(personId, nonEmployeeFlag)
&& protocolOnlineReview.isActive()) {
try {
protocolOnlineReviewDocument =
(ProtocolOnlineReviewDocumentBase)
getDocumentService()
.getByDocumentHeaderId(
protocolOnlineReview
.getProtocolOnlineReviewDocument()
.getDocumentNumber());
} catch (WorkflowException e) {
if (LOG.isDebugEnabled()) {
String errorMessage =
String.format(
"WorkflowException encountered while looking up document number %s for ProtocolOnlineReviewDocumentBase associated with (submissionId=%s,personId=%s,nonEmployeeFlag=%s",
protocolOnlineReview.getProtocolOnlineReviewDocument().getDocumentNumber(),
protocolSubmission.getSubmissionId(),
personId,
nonEmployeeFlag);
LOG.error(errorMessage, e);
throw new RuntimeException(errorMessage, e);
}
}
}
}
}
return protocolOnlineReviewDocument;
}
@Override
public ProtocolReviewer createProtocolReviewer(
String principalId,
boolean nonEmployeeFlag,
String reviewerTypeCode,
ProtocolSubmissionBase protocolSubmission) {
ProtocolReviewer reviewer = createNewProtocolReviewerInstanceHook();
reviewer.setProtocolIdFk(protocolSubmission.getProtocolId());
reviewer.setSubmissionIdFk(protocolSubmission.getSubmissionId());
reviewer.setProtocolNumber(protocolSubmission.getProtocolNumber());
reviewer.setSequenceNumber(protocolSubmission.getSequenceNumber());
reviewer.setSubmissionNumber(protocolSubmission.getSubmissionNumber());
if (!nonEmployeeFlag) {
reviewer.setPersonId(principalId);
} else {
reviewer.setRolodexId(Integer.parseInt(principalId));
}
reviewer.setNonEmployeeFlag(nonEmployeeFlag);
reviewer.setReviewerTypeCode(reviewerTypeCode);
businessObjectService.save(reviewer);
return reviewer;
}
