@Override public List<ProtocolOnlineReviewDocumentBase> getProtocolReviewDocumentsForCurrentSubmission( ProtocolBase protocol) { List<ProtocolOnlineReviewDocumentBase> onlineReviewDocuments = new ArrayList<ProtocolOnlineReviewDocumentBase>(); ProtocolSubmissionBase submission = protocol.getProtocolSubmission(); List<ProtocolOnlineReviewBase> reviews = findProtocolOnlineReviews(protocol.getProtocolId(), submission.getSubmissionId()); for (ProtocolOnlineReviewBase review : reviews) { if (review.isActive()) { review.refresh(); try { onlineReviewDocuments.add( (ProtocolOnlineReviewDocumentBase) (documentService.getByDocumentHeaderId( review.getProtocolOnlineReviewDocument().getDocumentNumber()))); } catch (WorkflowException e) { throw new RuntimeException( String.format( "Could not load ProtocolOnlineReviewBase docuemnt %s due to WorkflowException: %s", review.getProtocolOnlineReviewDocument().getDocumentNumber(), e.getMessage()), e); } } } return onlineReviewDocuments; }
/* * create the view link url for protocolsubmission */ protected AnchorHtmlData getViewLink(ProtocolSubmissionBase protocolSubmission) { AnchorHtmlData viewHtmlData = super.getViewLink(protocolSubmission.getProtocol().getProtocolDocument()); String submissionIdParam = "&submissionId=" + protocolSubmission.getSubmissionId(); String href = viewHtmlData.getHref(); href = href.replace(DOC_TYPE_NAME_PARAM, submissionIdParam + DOC_TYPE_NAME_PARAM); viewHtmlData.setHref(href); return viewHtmlData; }
public ProtocolOnlineReviewDocumentBase createProtocolOnlineReviewDocument( ProtocolSubmissionBase protocolSubmission, ProtocolReviewer protocolReviewer, String documentDescription, String documentExplanation, String documentOrganizationDocumentNumber, Date dateRequested, Date dateDue, String principalId) throws WorkflowException { IacucProtocolOnlineReviewDocument protocolReviewDocument; Person person = personService.getPerson(principalId); WorkflowDocument workflowDocument = workflowDocumentService.createWorkflowDocument( IACUC_PROTOCOL_ONLINE_REVIEW_DOCUMENT_TYPE, person); DocumentHeader docHeader = new DocumentHeader(); docHeader.setWorkflowDocument(workflowDocument); docHeader.setDocumentNumber(workflowDocument.getDocumentId().toString()); protocolReviewDocument = new IacucProtocolOnlineReviewDocument(); protocolReviewDocument.setDocumentNumber(docHeader.getDocumentNumber()); protocolReviewDocument.setDocumentHeader(docHeader); protocolReviewDocument.getProtocolOnlineReview().setProtocol(protocolSubmission.getProtocol()); protocolReviewDocument .getProtocolOnlineReview() .setProtocolId(protocolSubmission.getProtocolId()); protocolReviewDocument.getProtocolOnlineReview().setProtocolSubmission(protocolSubmission); protocolReviewDocument .getProtocolOnlineReview() .setSubmissionIdFk(protocolSubmission.getSubmissionId()); protocolReviewDocument .getProtocolOnlineReview() .setProtocolOnlineReviewStatusCode(IacucProtocolOnlineReviewStatus.SAVED_STATUS_CD); protocolReviewDocument .getProtocolOnlineReview() .setDateRequested( dateRequested == null ? new Date((new java.util.Date()).getTime()) : dateRequested); protocolReviewDocument.getProtocolOnlineReview().setDateDue(dateDue); protocolReviewDocument .getProtocolOnlineReview() .setProtocolReviewerId(protocolReviewer.getProtocolReviewerId()); protocolReviewDocument.getProtocolOnlineReview().setProtocolReviewer(protocolReviewer); docHeader.setDocumentDescription(documentDescription); docHeader.setOrganizationDocumentNumber(documentOrganizationDocumentNumber); docHeader.setExplanation(documentExplanation); documentService.saveDocument(protocolReviewDocument); return protocolReviewDocument; }
/** * Creates a new ProtocolReviewDocument. * * <p>Handles creating the workflow document, and the underlying ProtocolReview BO linking the * protocol, submission, and reviewer. * * @param protocolSubmission The protocol submission * @param protocolReviewerBean The bean that holds * @param documentDescription the description for the created document * @param documentExplanation the explanation for the created document * @param documentOrganizationNumber the organizationNumber for the created document * @param principalId The principalId to use when creating the workflow document. Usually this * should be the principal of the user creating the review. * @return * @throws WorkflowException */ protected ProtocolOnlineReviewDocumentBase createProtocolOnlineReviewDocument( ProtocolSubmissionBase protocolSubmission, ProtocolReviewer protocolReviewer, String documentDescription, String documentExplanation, String documentOrganizationDocumentNumber, Date dateRequested, Date dateDue, String principalId) throws WorkflowException { ProtocolOnlineReviewDocumentBase protocolReviewDocument; Person person = personService.getPerson(principalId); WorkflowDocument workflowDocument = workflowDocumentService.createWorkflowDocument(getProtocolOLRDocumentTypeHook(), person); DocumentHeader docHeader = new DocumentHeader(); docHeader.setWorkflowDocument(workflowDocument); docHeader.setDocumentNumber(workflowDocument.getDocumentId().toString()); protocolReviewDocument = getNewProtocolOnlineReviewDocumentInstanceHook(); protocolReviewDocument.setDocumentNumber(docHeader.getDocumentNumber()); protocolReviewDocument.setDocumentHeader(docHeader); protocolReviewDocument.getProtocolOnlineReview().setProtocol(protocolSubmission.getProtocol()); protocolReviewDocument .getProtocolOnlineReview() .setProtocolId(protocolSubmission.getProtocolId()); protocolReviewDocument.getProtocolOnlineReview().setProtocolSubmission(protocolSubmission); protocolReviewDocument .getProtocolOnlineReview() .setSubmissionIdFk(protocolSubmission.getSubmissionId()); protocolReviewDocument .getProtocolOnlineReview() .setProtocolOnlineReviewStatusCode(getProtocolOLRSavedStatusCodeHook()); protocolReviewDocument .getProtocolOnlineReview() .setDateRequested( dateRequested == null ? new Date((new java.util.Date()).getTime()) : dateRequested); protocolReviewDocument.getProtocolOnlineReview().setDateDue(dateDue); protocolReviewDocument .getProtocolOnlineReview() .setProtocolReviewerId(protocolReviewer.getProtocolReviewerId()); protocolReviewDocument.getProtocolOnlineReview().setProtocolReviewer(protocolReviewer); docHeader.setDocumentDescription(documentDescription); docHeader.setOrganizationDocumentNumber(documentOrganizationDocumentNumber); docHeader.setExplanation(documentExplanation); documentService.saveDocument(protocolReviewDocument); return protocolReviewDocument; }
@Override public void moveOnlineReviews( ProtocolSubmissionBase submission, ProtocolSubmissionBase newSubmission) { newSubmission.setProtocolOnlineReviews(new ArrayList<ProtocolOnlineReviewBase>()); for (ProtocolOnlineReviewBase review : submission.getProtocolOnlineReviews()) { review.setProtocol(newSubmission.getProtocol()); review.setProtocolId(newSubmission.getProtocol().getProtocolId()); review.setSubmissionIdFk(newSubmission.getSubmissionId()); if (CollectionUtils.isNotEmpty(review.getCommitteeScheduleMinutes())) { for (CommitteeScheduleMinuteBase comment : review.getCommitteeScheduleMinutes()) { comment.setProtocolIdFk(review.getProtocolId()); comment.setScheduleIdFk(newSubmission.getScheduleIdFk()); } } newSubmission.getProtocolOnlineReviews().add(review); } }
private void performGenericAction( Protocol protocol, ProtocolGenericActionBean actionBean, String protocolActionType) throws Exception { ProtocolAction protocolAction = (ProtocolAction) createProtocolActionAndAttach(protocol, actionBean, protocolActionType); if (protocol.getNotifyIrbSubmissionId() == null) { getProtocolActionService().updateProtocolStatus(protocolAction, protocol); } else { for (ProtocolSubmissionBase submission : protocol.getProtocolSubmissions()) { if (submission.getSubmissionId().equals(protocol.getNotifyIrbSubmissionId())) { submission.setSubmissionStatusCode(ProtocolSubmissionStatus.IRB_ACKNOWLEDGEMENT); } } } protocol.refreshReferenceObject("protocolStatus"); protocol.refreshReferenceObject("protocolSubmission"); getDocumentService().saveDocument(protocol.getProtocolDocument()); }
@Override public ProtocolOnlineReviewDocumentBase getProtocolOnlineReviewDocument( String personId, boolean nonEmployeeFlag, ProtocolSubmissionBase protocolSubmission) { ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument = null; if (protocolSubmission != null) { for (ProtocolOnlineReviewBase protocolOnlineReview : protocolSubmission.getProtocolOnlineReviews()) { if (protocolOnlineReview .getProtocolReviewer() .isPersonIdProtocolReviewer(personId, nonEmployeeFlag) && protocolOnlineReview.isActive()) { try { protocolOnlineReviewDocument = (ProtocolOnlineReviewDocumentBase) getDocumentService() .getByDocumentHeaderId( protocolOnlineReview .getProtocolOnlineReviewDocument() .getDocumentNumber()); } catch (WorkflowException e) { if (LOG.isDebugEnabled()) { String errorMessage = String.format( "WorkflowException encountered while looking up document number %s for ProtocolOnlineReviewDocumentBase associated with (submissionId=%s,personId=%s,nonEmployeeFlag=%s", protocolOnlineReview.getProtocolOnlineReviewDocument().getDocumentNumber(), protocolSubmission.getSubmissionId(), personId, nonEmployeeFlag); LOG.error(errorMessage, e); throw new RuntimeException(errorMessage, e); } } } } } return protocolOnlineReviewDocument; }
@Override public ProtocolReviewer createProtocolReviewer( String principalId, boolean nonEmployeeFlag, String reviewerTypeCode, ProtocolSubmissionBase protocolSubmission) { ProtocolReviewer reviewer = createNewProtocolReviewerInstanceHook(); reviewer.setProtocolIdFk(protocolSubmission.getProtocolId()); reviewer.setSubmissionIdFk(protocolSubmission.getSubmissionId()); reviewer.setProtocolNumber(protocolSubmission.getProtocolNumber()); reviewer.setSequenceNumber(protocolSubmission.getSequenceNumber()); reviewer.setSubmissionNumber(protocolSubmission.getSubmissionNumber()); if (!nonEmployeeFlag) { reviewer.setPersonId(principalId); } else { reviewer.setRolodexId(Integer.parseInt(principalId)); } reviewer.setNonEmployeeFlag(nonEmployeeFlag); reviewer.setReviewerTypeCode(reviewerTypeCode); businessObjectService.save(reviewer); return reviewer; }