@Test(dependsOnMethods = {"testMetadataLevel"})
public void testMetadataLevelEquivilentPlaneData() throws FormatException, IOException {
for (int i = 0; i < minimalWrapper.getSeriesCount(); i++) {
minimalWrapper.setSeries(i);
wrapper.setSeries(i);
assertEquals(wrapper.getImageCount(), minimalWrapper.getImageCount());
for (int j = 0; j < minimalWrapper.getImageCount(); j++) {
byte[] pixelsOnlyPlane = minimalWrapper.openBytes(j);
String pixelsOnlySHA1 = sha1(pixelsOnlyPlane);
byte[] allPlane = wrapper.openBytes(j);
String allSHA1 = sha1(allPlane);
if (!pixelsOnlySHA1.equals(allSHA1)) {
fail(
String.format(
"MISMATCH: Series:%d Image:%d PixelsOnly%s All:%s",
i, j, pixelsOnlySHA1, allSHA1));
}
}
}
}
/** opens the file using the {@link FormatReader} instance */
private void open(OMEROWrapper reader, OMEROMetadataStoreClient store, CheckedPath targetFile)
throws FormatException, IOException {
// reader.close(); This instance is no longer re-used
reader.setMetadataStore(store);
reader.setMinMaxStore(store);
store.setReader(reader.getImageReader());
targetFile.bfSetId(reader);
// reset series count
if (log.isDebugEnabled()) {
log.debug("Image Count: " + reader.getImageCount());
}
}