public Object pixelData(PixelDataJob pdj) throws Throwable {
if (!reader.isMinMaxSet() && !noStatsInfo) {
// Parse the binary data to generate min/max values
int seriesCount = reader.getSeriesCount();
for (int series = 0; series < seriesCount; series++) {
ImportSize size = new ImportSize(fileName, pixList.get(series), reader.getDimensionOrder());
Pixels pixels = pixList.get(series);
MessageDigest md = parseData(fileName, series, size);
if (md != null) {
final String s = Hex.encodeHexString(md.digest());
pixels.setSha1(store.toRType(s));
}
}
}
// As we're in metadata-only mode on we need to
// tell the server which Image matches which series.
int series = 0;
for (final Pixels pixels : pixList) {
store.setPixelsFile(pixels.getId().getValue(), fileName, repoUuid);
pixels.getImage().setSeries(store.toRType(series++));
}
for (final Image image : imageList) {
image.unloadAnnotationLinks();
}
store.updatePixels(pixList);
if (!reader.isMinMaxSet() && !noStatsInfo) {
store.populateMinMax();
}
return null;
}
