/**
* Calculates the percentage for the given value in the range denoted by the given lower and upper
* bounds.
*
* @param aValue the value;
* @param aLowerBound the lower bound of the range;
* @param aUpperBound the upper bound of the range.
* @return the percentage (= value * 100.0 / range).
*/
public static int getPercentage(final int aValue, final int aLowerBound, final int aUpperBound) {
int range;
int value = aValue;
if (aLowerBound > aUpperBound) {
range = aLowerBound - aUpperBound;
value = Math.max(0, value - aUpperBound);
} else {
range = aUpperBound - aLowerBound;
value = Math.max(0, value - aLowerBound);
}
return getPercentage(value, range);
}
private int mipMapHeight(int map) {
int height = getHeight();
for (int i = 0; i < map; i++) {
height >>= 1;
}
return Math.max(height, 1);
}
private int mipMapWidth(int map) {
int width = getWidth();
for (int i = 0; i < map; i++) {
width >>= 1;
}
return Math.max(width, 1);
}
/**
* Calculates the percentage for the given value in the given range.
*
* @param aValue the value;
* @param aRange the range (zero-based).
* @return the percentage (= value * 100.0 / aRange).
*/
public static int getPercentage(final long aValue, final long aRange) {
double value = 0.0;
if (aRange != 0) {
value = aValue * 100.0 / aRange;
}
return (int) Math.max(0.0, Math.min(100.0, value));
}
private int processPacket(final boolean readPage) {
while (true) {
if (this.m_decodeReady) {
final int result = this.m_oggStreamState.packetout(this.m_oggPacket);
if (result > 0) {
long granulepos = this.m_oggPacket.granulepos;
if (this.m_block.synthesis(this.m_oggPacket) == 0) {
this.m_dspState.synthesis_blockin(this.m_block);
if (granulepos != -1L) {
final int link = this.m_vorbisStream.isSeekable() ? this.m_currentLink : 0;
final int samples = this.m_dspState.synthesis_pcmout(null, null);
granulepos = Math.max(0L, granulepos - samples);
for (int i = 0; i < link; ++i) {
granulepos += this.m_pcmLengths[i];
}
this.m_pcmOffset = granulepos;
}
return 1;
}
}
}
if (!readPage) {
return 0;
}
if (this.getNextPage(this.m_oggPage, -1L) < 0) {
return 0;
}
if (this.m_decodeReady && this.m_currentSerialno != this.m_oggPage.serialno()) {
this.decodeClear();
}
if (!this.m_decodeReady) {
if (this.m_vorbisStream.isSeekable()) {
this.m_currentSerialno = this.m_oggPage.serialno();
int j;
for (j = 0; j < this.m_links && this.m_serialnos[j] != this.m_currentSerialno; ++j) {}
if (j == this.m_links) {
return -1;
}
this.m_currentLink = j;
this.m_oggStreamState.init(this.m_currentSerialno);
this.m_oggStreamState.reset();
} else {
final int[] serialnos = {0};
final int ret =
this.fetchHeaders(this.m_info[0], this.m_comments[0], serialnos, this.m_oggPage);
this.m_currentSerialno = serialnos[0];
if (ret != 0) {
return ret;
}
++this.m_currentLink;
}
this.makeDecodeReady();
}
this.m_oggStreamState.pagein(this.m_oggPage);
}
}
int[] init(int... dimensions) {
int size = dimensions.length > 0 ? dimensions[0] : 0;
if (___subrecord___ == null) {
final String[] indexPrefixes = {
"", "s", "_", "Index", "Length", "Ref", "Header", "Info", "Table"
};
for (String indexPrefix : indexPrefixes) {
try {
___subrecord___ =
(Class<? extends Enum>)
Class.forName(getClass().getPackage().getName() + '.' + name() + indexPrefix);
try {
size = ___subrecord___.getField("___recordlen___").getInt(null);
} catch (Exception e) {
}
break;
} catch (ClassNotFoundException e) {
}
}
}
for (String vPrefixe1 :
new String[] {
"_", "", "$", "Value",
}) {
if (___valueclass___ != null) break;
String suffix = vPrefixe1;
for (String name1 :
new String[] {
name().toLowerCase(), name(),
}) {
if (___valueclass___ != null) break;
final String trailName = name1;
if (trailName.endsWith(suffix)) {
for (String aPackage1 :
new String[] {
"", getClass().getPackage().getName() + ".", "java.lang.", "java.util.",
})
if (___valueclass___ == null) break;
else
try {
___valueclass___ = Class.forName(aPackage1 + name().replace(suffix, ""));
} catch (ClassNotFoundException e) {
}
}
}
}
int seek = dimensions.length > 1 ? dimensions[1] : ___recordlen___;
___recordlen___ = Math.max(___recordlen___, seek + size);
return new int[] {size, seek};
}
/**
* Read block from file.
*
* @param file - File to read.
* @param off - Marker position in file to start read from if {@code -1} read last blockSz bytes.
* @param blockSz - Maximum number of chars to read.
* @param lastModified - File last modification time.
* @return Read file block.
* @throws IOException In case of error.
*/
public static VisorFileBlock readBlock(File file, long off, int blockSz, long lastModified)
throws IOException {
RandomAccessFile raf = null;
try {
long fSz = file.length();
long fLastModified = file.lastModified();
long pos = off >= 0 ? off : Math.max(fSz - blockSz, 0);
// Try read more that file length.
if (fLastModified == lastModified && fSz != 0 && pos >= fSz)
throw new IOException(
"Trying to read file block with wrong offset: " + pos + " while file size: " + fSz);
if (fSz == 0)
return new VisorFileBlock(file.getPath(), pos, fLastModified, 0, false, EMPTY_FILE_BUF);
else {
int toRead = Math.min(blockSz, (int) (fSz - pos));
byte[] buf = new byte[toRead];
raf = new RandomAccessFile(file, "r");
raf.seek(pos);
int cntRead = raf.read(buf, 0, toRead);
if (cntRead != toRead)
throw new IOException(
"Count of requested and actually read bytes does not match [cntRead="
+ cntRead
+ ", toRead="
+ toRead
+ ']');
boolean zipped = buf.length > 512;
return new VisorFileBlock(
file.getPath(), pos, fSz, fLastModified, zipped, zipped ? zipBytes(buf) : buf);
}
} finally {
U.close(raf, null);
}
}
private void updateTextureAndDistortionMesh() {
final ScreenParams screen = this.mHmd.getScreenParams();
final CardboardDeviceParams cdp = this.mHmd.getCardboardDeviceParams();
if (this.mProgramHolder == null) {
this.mProgramHolder = this.createProgramHolder();
}
if (this.mProgramHolderAberration == null) {
this.mProgramHolderAberration = (ProgramHolderAberration) this.createProgramHolder(true);
}
final float textureWidthTanAngle = this.mLeftEyeViewport.width + this.mRightEyeViewport.width;
final float textureHeightTanAngle =
Math.max(this.mLeftEyeViewport.height, this.mRightEyeViewport.height);
final int[] maxTextureSize = {0};
GLES20.glGetIntegerv(GLES20.GL_MAX_TEXTURE_SIZE, maxTextureSize, 0);
final int textureWidthPx =
Math.min(Math.round(textureWidthTanAngle * this.mXPxPerTanAngle), maxTextureSize[0]);
final int textureHeightPx =
Math.min(Math.round(textureHeightTanAngle * this.mYPxPerTanAngle), maxTextureSize[0]);
float xEyeOffsetTanAngleScreen =
(screen.getWidthMeters() / 2.0f - cdp.getInterLensDistance() / 2.0f)
/ this.mMetersPerTanAngle;
final float yEyeOffsetTanAngleScreen =
(cdp.getVerticalDistanceToLensCenter() - screen.getBorderSizeMeters())
/ this.mMetersPerTanAngle;
this.mLeftEyeDistortionMesh =
this.createDistortionMesh(
this.mLeftEyeViewport,
textureWidthTanAngle,
textureHeightTanAngle,
xEyeOffsetTanAngleScreen,
yEyeOffsetTanAngleScreen);
xEyeOffsetTanAngleScreen =
screen.getWidthMeters() / this.mMetersPerTanAngle - xEyeOffsetTanAngleScreen;
this.mRightEyeDistortionMesh =
this.createDistortionMesh(
this.mRightEyeViewport,
textureWidthTanAngle,
textureHeightTanAngle,
xEyeOffsetTanAngleScreen,
yEyeOffsetTanAngleScreen);
this.setupRenderTextureAndRenderbuffer(textureWidthPx, textureHeightPx);
this.mFovsChanged = false;
}
public void build_bricks() {
ImagePlus imp;
ImagePlus orgimp;
ImageStack stack;
FileInfo finfo;
if (lvImgTitle.isEmpty()) return;
orgimp = WindowManager.getImage(lvImgTitle.get(0));
imp = orgimp;
finfo = imp.getFileInfo();
if (finfo == null) return;
int[] dims = imp.getDimensions();
int imageW = dims[0];
int imageH = dims[1];
int nCh = dims[2];
int imageD = dims[3];
int nFrame = dims[4];
int bdepth = imp.getBitDepth();
double xspc = finfo.pixelWidth;
double yspc = finfo.pixelHeight;
double zspc = finfo.pixelDepth;
double z_aspect = Math.max(xspc, yspc) / zspc;
int orgW = imageW;
int orgH = imageH;
int orgD = imageD;
double orgxspc = xspc;
double orgyspc = yspc;
double orgzspc = zspc;
lv = lvImgTitle.size();
if (filetype == "JPEG") {
for (int l = 0; l < lv; l++) {
if (WindowManager.getImage(lvImgTitle.get(l)).getBitDepth() != 8) {
IJ.error("A SOURCE IMAGE MUST BE 8BIT GLAYSCALE");
return;
}
}
}
// calculate levels
/* int baseXY = 256;
int baseZ = 256;
if (z_aspect < 0.5) baseZ = 128;
if (z_aspect > 2.0) baseXY = 128;
if (z_aspect >= 0.5 && z_aspect < 1.0) baseZ = (int)(baseZ*z_aspect);
if (z_aspect > 1.0 && z_aspect <= 2.0) baseXY = (int)(baseXY/z_aspect);
IJ.log("Z_aspect: " + z_aspect);
IJ.log("BaseXY: " + baseXY);
IJ.log("BaseZ: " + baseZ);
*/
int baseXY = 256;
int baseZ = 128;
int dbXY = Math.max(orgW, orgH) / baseXY;
if (Math.max(orgW, orgH) % baseXY > 0) dbXY *= 2;
int dbZ = orgD / baseZ;
if (orgD % baseZ > 0) dbZ *= 2;
lv = Math.max(log2(dbXY), log2(dbZ)) + 1;
int ww = orgW;
int hh = orgH;
int dd = orgD;
for (int l = 0; l < lv; l++) {
int bwnum = ww / baseXY;
if (ww % baseXY > 0) bwnum++;
int bhnum = hh / baseXY;
if (hh % baseXY > 0) bhnum++;
int bdnum = dd / baseZ;
if (dd % baseZ > 0) bdnum++;
if (bwnum % 2 == 0) bwnum++;
if (bhnum % 2 == 0) bhnum++;
if (bdnum % 2 == 0) bdnum++;
int bw = (bwnum <= 1) ? ww : ww / bwnum + 1 + (ww % bwnum > 0 ? 1 : 0);
int bh = (bhnum <= 1) ? hh : hh / bhnum + 1 + (hh % bhnum > 0 ? 1 : 0);
int bd = (bdnum <= 1) ? dd : dd / bdnum + 1 + (dd % bdnum > 0 ? 1 : 0);
bwlist.add(bw);
bhlist.add(bh);
bdlist.add(bd);
IJ.log("LEVEL: " + l);
IJ.log(" width: " + ww);
IJ.log(" hight: " + hh);
IJ.log(" depth: " + dd);
IJ.log(" bw: " + bw);
IJ.log(" bh: " + bh);
IJ.log(" bd: " + bd);
int xyl2 = Math.max(ww, hh) / baseXY;
if (Math.max(ww, hh) % baseXY > 0) xyl2 *= 2;
if (lv - 1 - log2(xyl2) <= l) {
ww /= 2;
hh /= 2;
}
IJ.log(" xyl2: " + (lv - 1 - log2(xyl2)));
int zl2 = dd / baseZ;
if (dd % baseZ > 0) zl2 *= 2;
if (lv - 1 - log2(zl2) <= l) dd /= 2;
IJ.log(" zl2: " + (lv - 1 - log2(zl2)));
if (l < lv - 1) {
lvImgTitle.add(lvImgTitle.get(0) + "_level" + (l + 1));
IJ.selectWindow(lvImgTitle.get(0));
IJ.run(
"Scale...",
"x=- y=- z=- width="
+ ww
+ " height="
+ hh
+ " depth="
+ dd
+ " interpolation=Bicubic average process create title="
+ lvImgTitle.get(l + 1));
}
}
for (int l = 0; l < lv; l++) {
IJ.log(lvImgTitle.get(l));
}
Document doc = newXMLDocument();
Element root = doc.createElement("BRK");
root.setAttribute("version", "1.0");
root.setAttribute("nLevel", String.valueOf(lv));
root.setAttribute("nChannel", String.valueOf(nCh));
root.setAttribute("nFrame", String.valueOf(nFrame));
doc.appendChild(root);
for (int l = 0; l < lv; l++) {
IJ.showProgress(0.0);
int[] dims2 = imp.getDimensions();
IJ.log(
"W: "
+ String.valueOf(dims2[0])
+ " H: "
+ String.valueOf(dims2[1])
+ " C: "
+ String.valueOf(dims2[2])
+ " D: "
+ String.valueOf(dims2[3])
+ " T: "
+ String.valueOf(dims2[4])
+ " b: "
+ String.valueOf(bdepth));
bw = bwlist.get(l).intValue();
bh = bhlist.get(l).intValue();
bd = bdlist.get(l).intValue();
boolean force_pow2 = false;
/* if(IsPowerOf2(bw) && IsPowerOf2(bh) && IsPowerOf2(bd)) force_pow2 = true;
if(force_pow2){
//force pow2
if(Pow2(bw) > bw) bw = Pow2(bw)/2;
if(Pow2(bh) > bh) bh = Pow2(bh)/2;
if(Pow2(bd) > bd) bd = Pow2(bd)/2;
}
if(bw > imageW) bw = (Pow2(imageW) == imageW) ? imageW : Pow2(imageW)/2;
if(bh > imageH) bh = (Pow2(imageH) == imageH) ? imageH : Pow2(imageH)/2;
if(bd > imageD) bd = (Pow2(imageD) == imageD) ? imageD : Pow2(imageD)/2;
*/
if (bw > imageW) bw = imageW;
if (bh > imageH) bh = imageH;
if (bd > imageD) bd = imageD;
if (bw <= 1 || bh <= 1 || bd <= 1) break;
if (filetype == "JPEG" && (bw < 8 || bh < 8)) break;
Element lvnode = doc.createElement("Level");
lvnode.setAttribute("lv", String.valueOf(l));
lvnode.setAttribute("imageW", String.valueOf(imageW));
lvnode.setAttribute("imageH", String.valueOf(imageH));
lvnode.setAttribute("imageD", String.valueOf(imageD));
lvnode.setAttribute("xspc", String.valueOf(xspc));
lvnode.setAttribute("yspc", String.valueOf(yspc));
lvnode.setAttribute("zspc", String.valueOf(zspc));
lvnode.setAttribute("bitDepth", String.valueOf(bdepth));
root.appendChild(lvnode);
Element brksnode = doc.createElement("Bricks");
brksnode.setAttribute("brick_baseW", String.valueOf(bw));
brksnode.setAttribute("brick_baseH", String.valueOf(bh));
brksnode.setAttribute("brick_baseD", String.valueOf(bd));
lvnode.appendChild(brksnode);
ArrayList<Brick> bricks = new ArrayList<Brick>();
int mw, mh, md, mw2, mh2, md2;
double tx0, ty0, tz0, tx1, ty1, tz1;
double bx0, by0, bz0, bx1, by1, bz1;
for (int k = 0; k < imageD; k += bd) {
if (k > 0) k--;
for (int j = 0; j < imageH; j += bh) {
if (j > 0) j--;
for (int i = 0; i < imageW; i += bw) {
if (i > 0) i--;
mw = Math.min(bw, imageW - i);
mh = Math.min(bh, imageH - j);
md = Math.min(bd, imageD - k);
if (force_pow2) {
mw2 = Pow2(mw);
mh2 = Pow2(mh);
md2 = Pow2(md);
} else {
mw2 = mw;
mh2 = mh;
md2 = md;
}
if (filetype == "JPEG") {
if (mw2 < 8) mw2 = 8;
if (mh2 < 8) mh2 = 8;
}
tx0 = i == 0 ? 0.0d : ((mw2 - mw + 0.5d) / mw2);
ty0 = j == 0 ? 0.0d : ((mh2 - mh + 0.5d) / mh2);
tz0 = k == 0 ? 0.0d : ((md2 - md + 0.5d) / md2);
tx1 = 1.0d - 0.5d / mw2;
if (mw < bw) tx1 = 1.0d;
if (imageW - i == bw) tx1 = 1.0d;
ty1 = 1.0d - 0.5d / mh2;
if (mh < bh) ty1 = 1.0d;
if (imageH - j == bh) ty1 = 1.0d;
tz1 = 1.0d - 0.5d / md2;
if (md < bd) tz1 = 1.0d;
if (imageD - k == bd) tz1 = 1.0d;
bx0 = i == 0 ? 0.0d : (i + 0.5d) / (double) imageW;
by0 = j == 0 ? 0.0d : (j + 0.5d) / (double) imageH;
bz0 = k == 0 ? 0.0d : (k + 0.5d) / (double) imageD;
bx1 = Math.min((i + bw - 0.5d) / (double) imageW, 1.0d);
if (imageW - i == bw) bx1 = 1.0d;
by1 = Math.min((j + bh - 0.5d) / (double) imageH, 1.0d);
if (imageH - j == bh) by1 = 1.0d;
bz1 = Math.min((k + bd - 0.5d) / (double) imageD, 1.0d);
if (imageD - k == bd) bz1 = 1.0d;
int x, y, z;
x = i - (mw2 - mw);
y = j - (mh2 - mh);
z = k - (md2 - md);
bricks.add(
new Brick(
x, y, z, mw2, mh2, md2, 0, 0, tx0, ty0, tz0, tx1, ty1, tz1, bx0, by0, bz0, bx1,
by1, bz1));
}
}
}
Element fsnode = doc.createElement("Files");
lvnode.appendChild(fsnode);
stack = imp.getStack();
int totalbricknum = nFrame * nCh * bricks.size();
int curbricknum = 0;
for (int f = 0; f < nFrame; f++) {
for (int ch = 0; ch < nCh; ch++) {
int sizelimit = bdsizelimit * 1024 * 1024;
int bytecount = 0;
int filecount = 0;
int pd_bufsize = Math.max(sizelimit, bw * bh * bd * bdepth / 8);
byte[] packed_data = new byte[pd_bufsize];
String base_dataname =
basename
+ "_Lv"
+ String.valueOf(l)
+ "_Ch"
+ String.valueOf(ch)
+ "_Fr"
+ String.valueOf(f);
String current_dataname = base_dataname + "_data" + filecount;
Brick b_first = bricks.get(0);
if (b_first.z_ != 0) IJ.log("warning");
int st_z = b_first.z_;
int ed_z = b_first.z_ + b_first.d_;
LinkedList<ImageProcessor> iplist = new LinkedList<ImageProcessor>();
for (int s = st_z; s < ed_z; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
// ImagePlus test;
// ImageStack tsst;
// test = NewImage.createByteImage("test", imageW, imageH, imageD,
// NewImage.FILL_BLACK);
// tsst = test.getStack();
for (int i = 0; i < bricks.size(); i++) {
Brick b = bricks.get(i);
if (ed_z > b.z_ || st_z < b.z_ + b.d_) {
if (b.z_ > st_z) {
for (int s = 0; s < b.z_ - st_z; s++) iplist.pollFirst();
st_z = b.z_;
} else if (b.z_ < st_z) {
IJ.log("warning");
for (int s = st_z - 1; s > b.z_; s--)
iplist.addFirst(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
st_z = b.z_;
}
if (b.z_ + b.d_ > ed_z) {
for (int s = ed_z; s < b.z_ + b.d_; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
ed_z = b.z_ + b.d_;
} else if (b.z_ + b.d_ < ed_z) {
IJ.log("warning");
for (int s = 0; s < ed_z - (b.z_ + b.d_); s++) iplist.pollLast();
ed_z = b.z_ + b.d_;
}
} else {
IJ.log("warning");
iplist.clear();
st_z = b.z_;
ed_z = b.z_ + b.d_;
for (int s = st_z; s < ed_z; s++)
iplist.add(stack.getProcessor(imp.getStackIndex(ch + 1, s + 1, f + 1)));
}
if (iplist.size() != b.d_) {
IJ.log("Stack Error");
return;
}
// int zz = st_z;
int bsize = 0;
byte[] bdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
Iterator<ImageProcessor> ipite = iplist.iterator();
while (ipite.hasNext()) {
// ImageProcessor tsip = tsst.getProcessor(zz+1);
ImageProcessor ip = ipite.next();
ip.setRoi(b.x_, b.y_, b.w_, b.h_);
if (bdepth == 8) {
byte[] data = (byte[]) ip.crop().getPixels();
System.arraycopy(data, 0, bdata, bsize, data.length);
bsize += data.length;
} else if (bdepth == 16) {
ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
buffer.order(ByteOrder.LITTLE_ENDIAN);
short[] data = (short[]) ip.crop().getPixels();
for (short e : data) buffer.putShort(e);
System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
bsize += buffer.array().length;
} else if (bdepth == 32) {
ByteBuffer buffer = ByteBuffer.allocate(b.w_ * b.h_ * bdepth / 8);
buffer.order(ByteOrder.LITTLE_ENDIAN);
float[] data = (float[]) ip.crop().getPixels();
for (float e : data) buffer.putFloat(e);
System.arraycopy(buffer.array(), 0, bdata, bsize, buffer.array().length);
bsize += buffer.array().length;
}
}
String filename =
basename
+ "_Lv"
+ String.valueOf(l)
+ "_Ch"
+ String.valueOf(ch)
+ "_Fr"
+ String.valueOf(f)
+ "_ID"
+ String.valueOf(i);
int offset = bytecount;
int datasize = bdata.length;
if (filetype == "RAW") {
int dummy = -1;
// do nothing
}
if (filetype == "JPEG" && bdepth == 8) {
try {
DataBufferByte db = new DataBufferByte(bdata, datasize);
Raster raster = Raster.createPackedRaster(db, b.w_, b.h_ * b.d_, 8, null);
BufferedImage img =
new BufferedImage(b.w_, b.h_ * b.d_, BufferedImage.TYPE_BYTE_GRAY);
img.setData(raster);
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ImageOutputStream ios = ImageIO.createImageOutputStream(baos);
String format = "jpg";
Iterator<javax.imageio.ImageWriter> iter =
ImageIO.getImageWritersByFormatName("jpeg");
javax.imageio.ImageWriter writer = iter.next();
ImageWriteParam iwp = writer.getDefaultWriteParam();
iwp.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
iwp.setCompressionQuality((float) jpeg_quality * 0.01f);
writer.setOutput(ios);
writer.write(null, new IIOImage(img, null, null), iwp);
// ImageIO.write(img, format, baos);
bdata = baos.toByteArray();
datasize = bdata.length;
} catch (IOException e) {
e.printStackTrace();
return;
}
}
if (filetype == "ZLIB") {
byte[] tmpdata = new byte[b.w_ * b.h_ * b.d_ * bdepth / 8];
Deflater compresser = new Deflater();
compresser.setInput(bdata);
compresser.setLevel(Deflater.DEFAULT_COMPRESSION);
compresser.setStrategy(Deflater.DEFAULT_STRATEGY);
compresser.finish();
datasize = compresser.deflate(tmpdata);
bdata = tmpdata;
compresser.end();
}
if (bytecount + datasize > sizelimit && bytecount > 0) {
BufferedOutputStream fis = null;
try {
File file = new File(directory + current_dataname);
fis = new BufferedOutputStream(new FileOutputStream(file));
fis.write(packed_data, 0, bytecount);
} catch (IOException e) {
e.printStackTrace();
return;
} finally {
try {
if (fis != null) fis.close();
} catch (IOException e) {
e.printStackTrace();
return;
}
}
filecount++;
current_dataname = base_dataname + "_data" + filecount;
bytecount = 0;
offset = 0;
System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
bytecount += datasize;
} else {
System.arraycopy(bdata, 0, packed_data, bytecount, datasize);
bytecount += datasize;
}
Element filenode = doc.createElement("File");
filenode.setAttribute("filename", current_dataname);
filenode.setAttribute("channel", String.valueOf(ch));
filenode.setAttribute("frame", String.valueOf(f));
filenode.setAttribute("brickID", String.valueOf(i));
filenode.setAttribute("offset", String.valueOf(offset));
filenode.setAttribute("datasize", String.valueOf(datasize));
filenode.setAttribute("filetype", String.valueOf(filetype));
fsnode.appendChild(filenode);
curbricknum++;
IJ.showProgress((double) (curbricknum) / (double) (totalbricknum));
}
if (bytecount > 0) {
BufferedOutputStream fis = null;
try {
File file = new File(directory + current_dataname);
fis = new BufferedOutputStream(new FileOutputStream(file));
fis.write(packed_data, 0, bytecount);
} catch (IOException e) {
e.printStackTrace();
return;
} finally {
try {
if (fis != null) fis.close();
} catch (IOException e) {
e.printStackTrace();
return;
}
}
}
}
}
for (int i = 0; i < bricks.size(); i++) {
Brick b = bricks.get(i);
Element bricknode = doc.createElement("Brick");
bricknode.setAttribute("id", String.valueOf(i));
bricknode.setAttribute("st_x", String.valueOf(b.x_));
bricknode.setAttribute("st_y", String.valueOf(b.y_));
bricknode.setAttribute("st_z", String.valueOf(b.z_));
bricknode.setAttribute("width", String.valueOf(b.w_));
bricknode.setAttribute("height", String.valueOf(b.h_));
bricknode.setAttribute("depth", String.valueOf(b.d_));
brksnode.appendChild(bricknode);
Element tboxnode = doc.createElement("tbox");
tboxnode.setAttribute("x0", String.valueOf(b.tx0_));
tboxnode.setAttribute("y0", String.valueOf(b.ty0_));
tboxnode.setAttribute("z0", String.valueOf(b.tz0_));
tboxnode.setAttribute("x1", String.valueOf(b.tx1_));
tboxnode.setAttribute("y1", String.valueOf(b.ty1_));
tboxnode.setAttribute("z1", String.valueOf(b.tz1_));
bricknode.appendChild(tboxnode);
Element bboxnode = doc.createElement("bbox");
bboxnode.setAttribute("x0", String.valueOf(b.bx0_));
bboxnode.setAttribute("y0", String.valueOf(b.by0_));
bboxnode.setAttribute("z0", String.valueOf(b.bz0_));
bboxnode.setAttribute("x1", String.valueOf(b.bx1_));
bboxnode.setAttribute("y1", String.valueOf(b.by1_));
bboxnode.setAttribute("z1", String.valueOf(b.bz1_));
bricknode.appendChild(bboxnode);
}
if (l < lv - 1) {
imp = WindowManager.getImage(lvImgTitle.get(l + 1));
int[] newdims = imp.getDimensions();
imageW = newdims[0];
imageH = newdims[1];
imageD = newdims[3];
xspc = orgxspc * ((double) orgW / (double) imageW);
yspc = orgyspc * ((double) orgH / (double) imageH);
zspc = orgzspc * ((double) orgD / (double) imageD);
bdepth = imp.getBitDepth();
}
}
File newXMLfile = new File(directory + basename + ".vvd");
writeXML(newXMLfile, doc);
for (int l = 1; l < lv; l++) {
imp = WindowManager.getImage(lvImgTitle.get(l));
imp.changes = false;
imp.close();
}
}
private void updateSubImageImpl(
TextureData data,
int newTarget,
int mipmapLevel,
int dstx,
int dsty,
int srcx,
int srcy,
int width,
int height)
throws GLException {
GL gl = GLU.getCurrentGL();
data.setHaveEXTABGR(gl.isExtensionAvailable("GL_EXT_abgr"));
data.setHaveGL12(gl.isExtensionAvailable("GL_VERSION_1_2"));
Buffer buffer = data.getBuffer();
if (buffer == null && data.getMipmapData() == null) {
// Assume user just wanted to get the Texture object allocated
return;
}
int rowlen = data.getRowLength();
int dataWidth = data.getWidth();
int dataHeight = data.getHeight();
if (data.getMipmapData() != null) {
// Compute the width, height and row length at the specified mipmap level
// Note we do not support specification of the row length for
// mipmapped textures at this point
for (int i = 0; i < mipmapLevel; i++) {
width = Math.max(width / 2, 1);
height = Math.max(height / 2, 1);
dataWidth = Math.max(dataWidth / 2, 1);
dataHeight = Math.max(dataHeight / 2, 1);
}
rowlen = 0;
buffer = data.getMipmapData()[mipmapLevel];
}
// Clip incoming rectangles to what is available both on this
// texture and in the incoming TextureData
if (srcx < 0) {
width += srcx;
srcx = 0;
}
if (srcy < 0) {
height += srcy;
srcy = 0;
}
// NOTE: not sure whether the following two are the correct thing to do
if (dstx < 0) {
width += dstx;
dstx = 0;
}
if (dsty < 0) {
height += dsty;
dsty = 0;
}
if (srcx + width > dataWidth) {
width = dataWidth - srcx;
}
if (srcy + height > dataHeight) {
height = dataHeight - srcy;
}
if (dstx + width > texWidth) {
width = texWidth - dstx;
}
if (dsty + height > texHeight) {
height = texHeight - dsty;
}
checkCompressedTextureExtensions(data);
if (data.isDataCompressed()) {
gl.glCompressedTexSubImage2D(
newTarget,
mipmapLevel,
dstx,
dsty,
width,
height,
data.getInternalFormat(),
buffer.remaining(),
buffer);
} else {
int[] align = new int[1];
int[] rowLength = new int[1];
int[] skipRows = new int[1];
int[] skipPixels = new int[1];
gl.glGetIntegerv(GL.GL_UNPACK_ALIGNMENT, align, 0); // save alignment
gl.glGetIntegerv(GL.GL_UNPACK_ROW_LENGTH, rowLength, 0); // save row length
gl.glGetIntegerv(GL.GL_UNPACK_SKIP_ROWS, skipRows, 0); // save skipped rows
gl.glGetIntegerv(GL.GL_UNPACK_SKIP_PIXELS, skipPixels, 0); // save skipped pixels
gl.glPixelStorei(GL.GL_UNPACK_ALIGNMENT, data.getAlignment());
if (DEBUG && VERBOSE) {
System.out.println("Row length = " + rowlen);
System.out.println("skip pixels = " + srcx);
System.out.println("skip rows = " + srcy);
System.out.println("dstx = " + dstx);
System.out.println("dsty = " + dsty);
System.out.println("width = " + width);
System.out.println("height = " + height);
}
gl.glPixelStorei(GL.GL_UNPACK_ROW_LENGTH, rowlen);
gl.glPixelStorei(GL.GL_UNPACK_SKIP_ROWS, srcy);
gl.glPixelStorei(GL.GL_UNPACK_SKIP_PIXELS, srcx);
gl.glTexSubImage2D(
newTarget,
mipmapLevel,
dstx,
dsty,
width,
height,
data.getPixelFormat(),
data.getPixelType(),
buffer);
gl.glPixelStorei(GL.GL_UNPACK_ALIGNMENT, align[0]); // restore alignment
gl.glPixelStorei(GL.GL_UNPACK_ROW_LENGTH, rowLength[0]); // restore row length
gl.glPixelStorei(GL.GL_UNPACK_SKIP_ROWS, skipRows[0]); // restore skipped rows
gl.glPixelStorei(GL.GL_UNPACK_SKIP_PIXELS, skipPixels[0]); // restore skipped pixels
}
}
/**
* Updates the content area of the specified target of this texture using the data in the given
* image. In general this is intended for construction of cube maps.
*
* @throws GLException if no OpenGL context was current or if any OpenGL-related errors occurred
*/
public void updateImage(TextureData data, int target) throws GLException {
GL gl = GLU.getCurrentGL();
imgWidth = data.getWidth();
imgHeight = data.getHeight();
aspectRatio = (float) imgWidth / (float) imgHeight;
mustFlipVertically = data.getMustFlipVertically();
int texTarget = 0;
int texParamTarget = this.target;
// See whether we have automatic mipmap generation support
boolean haveAutoMipmapGeneration =
(gl.isExtensionAvailable("GL_VERSION_1_4")
|| gl.isExtensionAvailable("GL_SGIS_generate_mipmap"));
// Indicate to the TextureData what functionality is available
data.setHaveEXTABGR(gl.isExtensionAvailable("GL_EXT_abgr"));
data.setHaveGL12(gl.isExtensionAvailable("GL_VERSION_1_2"));
// Note that automatic mipmap generation doesn't work for
// GL_ARB_texture_rectangle
if ((!isPowerOfTwo(imgWidth) || !isPowerOfTwo(imgHeight)) && !haveNPOT(gl)) {
haveAutoMipmapGeneration = false;
}
boolean expandingCompressedTexture = false;
if (data.getMipmap() && !haveAutoMipmapGeneration) {
// GLU always scales the texture's dimensions to be powers of
// two. It also doesn't really matter exactly what the texture
// width and height are because the texture coords are always
// between 0.0 and 1.0.
imgWidth = nextPowerOfTwo(imgWidth);
imgHeight = nextPowerOfTwo(imgHeight);
texWidth = imgWidth;
texHeight = imgHeight;
texTarget = GL.GL_TEXTURE_2D;
} else if ((isPowerOfTwo(imgWidth) && isPowerOfTwo(imgHeight)) || haveNPOT(gl)) {
if (DEBUG) {
if (isPowerOfTwo(imgWidth) && isPowerOfTwo(imgHeight)) {
System.err.println("Power-of-two texture");
} else {
System.err.println("Using GL_ARB_texture_non_power_of_two");
}
}
texWidth = imgWidth;
texHeight = imgHeight;
texTarget = GL.GL_TEXTURE_2D;
} else if (haveTexRect(gl) && !data.isDataCompressed()) {
// GL_ARB_texture_rectangle does not work for compressed textures
if (DEBUG) {
System.err.println("Using GL_ARB_texture_rectangle");
}
texWidth = imgWidth;
texHeight = imgHeight;
texTarget = GL.GL_TEXTURE_RECTANGLE_ARB;
} else {
// If we receive non-power-of-two compressed texture data and
// don't have true hardware support for compressed textures, we
// can fake this support by producing an empty "compressed"
// texture image, using glCompressedTexImage2D with that to
// allocate the texture, and glCompressedTexSubImage2D with the
// incoming data.
if (data.isDataCompressed()) {
if (data.getMipmapData() != null) {
// We don't currently support expanding of compressed,
// mipmapped non-power-of-two textures to the nearest power
// of two; the obvious port of the non-mipmapped code didn't
// work
throw new GLException(
"Mipmapped non-power-of-two compressed textures only supported on OpenGL 2.0 hardware (GL_ARB_texture_non_power_of_two)");
}
expandingCompressedTexture = true;
}
if (DEBUG) {
System.err.println("Expanding texture to power-of-two dimensions");
}
if (data.getBorder() != 0) {
throw new RuntimeException(
"Scaling up a non-power-of-two texture which has a border won't work");
}
texWidth = nextPowerOfTwo(imgWidth);
texHeight = nextPowerOfTwo(imgHeight);
texTarget = GL.GL_TEXTURE_2D;
}
texParamTarget = texTarget;
setImageSize(imgWidth, imgHeight, texTarget);
if (target != 0) {
// Allow user to override auto detection and skip bind step (for
// cubemap construction)
texTarget = target;
if (this.target == 0) {
throw new GLException("Override of target failed; no target specified yet");
}
texParamTarget = this.target;
gl.glBindTexture(texParamTarget, texID);
} else {
gl.glBindTexture(texTarget, texID);
}
if (data.getMipmap() && !haveAutoMipmapGeneration) {
int[] align = new int[1];
gl.glGetIntegerv(GL.GL_UNPACK_ALIGNMENT, align, 0); // save alignment
gl.glPixelStorei(GL.GL_UNPACK_ALIGNMENT, data.getAlignment());
if (data.isDataCompressed()) {
throw new GLException("May not request mipmap generation for compressed textures");
}
try {
GLU glu = new GLU();
glu.gluBuild2DMipmaps(
texTarget,
data.getInternalFormat(),
data.getWidth(),
data.getHeight(),
data.getPixelFormat(),
data.getPixelType(),
data.getBuffer());
} finally {
gl.glPixelStorei(GL.GL_UNPACK_ALIGNMENT, align[0]); // restore alignment
}
} else {
checkCompressedTextureExtensions(data);
Buffer[] mipmapData = data.getMipmapData();
if (mipmapData != null) {
int width = texWidth;
int height = texHeight;
for (int i = 0; i < mipmapData.length; i++) {
if (data.isDataCompressed()) {
// Need to use glCompressedTexImage2D directly to allocate and fill this image
// Avoid spurious memory allocation when possible
gl.glCompressedTexImage2D(
texTarget,
i,
data.getInternalFormat(),
width,
height,
data.getBorder(),
mipmapData[i].remaining(),
mipmapData[i]);
} else {
// Allocate texture image at this level
gl.glTexImage2D(
texTarget,
i,
data.getInternalFormat(),
width,
height,
data.getBorder(),
data.getPixelFormat(),
data.getPixelType(),
null);
updateSubImageImpl(data, texTarget, i, 0, 0, 0, 0, data.getWidth(), data.getHeight());
}
width = Math.max(width / 2, 1);
height = Math.max(height / 2, 1);
}
} else {
if (data.isDataCompressed()) {
if (!expandingCompressedTexture) {
// Need to use glCompressedTexImage2D directly to allocate and fill this image
// Avoid spurious memory allocation when possible
gl.glCompressedTexImage2D(
texTarget,
0,
data.getInternalFormat(),
texWidth,
texHeight,
data.getBorder(),
data.getBuffer().capacity(),
data.getBuffer());
} else {
ByteBuffer buf =
DDSImage.allocateBlankBuffer(texWidth, texHeight, data.getInternalFormat());
gl.glCompressedTexImage2D(
texTarget,
0,
data.getInternalFormat(),
texWidth,
texHeight,
data.getBorder(),
buf.capacity(),
buf);
updateSubImageImpl(data, texTarget, 0, 0, 0, 0, 0, data.getWidth(), data.getHeight());
}
} else {
if (data.getMipmap() && haveAutoMipmapGeneration) {
// For now, only use hardware mipmapping for uncompressed 2D
// textures where the user hasn't explicitly specified
// mipmap data; don't know about interactions between
// GL_GENERATE_MIPMAP and glCompressedTexImage2D
gl.glTexParameteri(texParamTarget, GL.GL_GENERATE_MIPMAP, GL.GL_TRUE);
usingAutoMipmapGeneration = true;
}
gl.glTexImage2D(
texTarget,
0,
data.getInternalFormat(),
texWidth,
texHeight,
data.getBorder(),
data.getPixelFormat(),
data.getPixelType(),
null);
updateSubImageImpl(data, texTarget, 0, 0, 0, 0, 0, data.getWidth(), data.getHeight());
}
}
}
int minFilter = (data.getMipmap() ? GL.GL_LINEAR_MIPMAP_LINEAR : GL.GL_LINEAR);
int magFilter = GL.GL_LINEAR;
int wrapMode = (gl.isExtensionAvailable("GL_VERSION_1_2") ? GL.GL_CLAMP_TO_EDGE : GL.GL_CLAMP);
// REMIND: figure out what to do for GL_TEXTURE_RECTANGLE_ARB
if (texTarget != GL.GL_TEXTURE_RECTANGLE_ARB) {
gl.glTexParameteri(texParamTarget, GL.GL_TEXTURE_MIN_FILTER, minFilter);
gl.glTexParameteri(texParamTarget, GL.GL_TEXTURE_MAG_FILTER, magFilter);
gl.glTexParameteri(texParamTarget, GL.GL_TEXTURE_WRAP_S, wrapMode);
gl.glTexParameteri(texParamTarget, GL.GL_TEXTURE_WRAP_T, wrapMode);
if (this.target == GL.GL_TEXTURE_CUBE_MAP) {
gl.glTexParameteri(texParamTarget, GL.GL_TEXTURE_WRAP_R, wrapMode);
}
}
// Don't overwrite target if we're loading e.g. faces of a cube
// map
if ((this.target == 0)
|| (this.target == GL.GL_TEXTURE_2D)
|| (this.target == GL.GL_TEXTURE_RECTANGLE_ARB)) {
this.target = texTarget;
}
// This estimate will be wrong for cube maps
estimatedMemorySize = data.getEstimatedMemorySize();
}
private static float clamp(final float val, final float min, final float max) {
return Math.max(min, Math.min(max, val));
}
public static void intersect(Rect r1, Rect r2, Rect dst) {
dst.top = Math.max(r1.top, r2.top);
dst.bottom = Math.min(r1.bottom, r2.bottom);
dst.left = Math.max(r1.left, r2.left);
dst.right = Math.min(r1.right, r2.right);
}