Exemplo n.º 1
0
  private static void finalize(
      Configuration conf, JobConf jobconf, final Path destPath, String presevedAttributes)
      throws IOException {
    if (presevedAttributes == null) {
      return;
    }
    EnumSet<FileAttribute> preseved = FileAttribute.parse(presevedAttributes);
    if (!preseved.contains(FileAttribute.USER)
        && !preseved.contains(FileAttribute.GROUP)
        && !preseved.contains(FileAttribute.PERMISSION)) {
      return;
    }

    FileSystem dstfs = destPath.getFileSystem(conf);
    Path dstdirlist = new Path(jobconf.get(DST_DIR_LIST_LABEL));
    SequenceFile.Reader in = null;
    try {
      in = new SequenceFile.Reader(dstdirlist.getFileSystem(jobconf), dstdirlist, jobconf);
      Text dsttext = new Text();
      FilePair pair = new FilePair();
      for (; in.next(dsttext, pair); ) {
        Path absdst = new Path(destPath, pair.output);
        updatePermissions(pair.input, dstfs.getFileStatus(absdst), preseved, dstfs);
      }
    } finally {
      checkAndClose(in);
    }
  }
Exemplo n.º 2
0
  // copy source to target with verification
  static void copyAndVerify(Path source, Path target, CopyOption... options) throws IOException {
    Path result = copy(source, target, options);
    assertTrue(result == target);

    // get attributes of source and target file to verify copy
    boolean followLinks = true;
    LinkOption[] linkOptions = new LinkOption[0];
    boolean copyAttributes = false;
    for (CopyOption opt : options) {
      if (opt == NOFOLLOW_LINKS) {
        followLinks = false;
        linkOptions = new LinkOption[] {NOFOLLOW_LINKS};
      }
      if (opt == COPY_ATTRIBUTES) copyAttributes = true;
    }
    BasicFileAttributes basicAttributes =
        readAttributes(source, BasicFileAttributes.class, linkOptions);

    // check hash if regular file
    if (basicAttributes.isRegularFile()) assertTrue(computeHash(source) == computeHash(target));

    // check link target if symbolic link
    if (basicAttributes.isSymbolicLink())
      assert (readSymbolicLink(source).equals(readSymbolicLink(target)));

    // check that attributes are copied
    if (copyAttributes && followLinks) {
      checkBasicAttributes(
          basicAttributes, readAttributes(source, BasicFileAttributes.class, linkOptions));

      // verify other attributes when same provider
      if (source.getFileSystem().provider() == target.getFileSystem().provider()) {

        // check POSIX attributes are copied
        String os = System.getProperty("os.name");
        if ((os.equals("SunOS") || os.equals("Linux")) && testPosixAttributes) {
          checkPosixAttributes(
              readAttributes(source, PosixFileAttributes.class, linkOptions),
              readAttributes(target, PosixFileAttributes.class, linkOptions));
        }

        // check DOS attributes are copied
        if (os.startsWith("Windows")) {
          checkDosAttributes(
              readAttributes(source, DosFileAttributes.class, linkOptions),
              readAttributes(target, DosFileAttributes.class, linkOptions));
        }

        // check named attributes are copied
        if (followLinks
            && getFileStore(source).supportsFileAttributeView("xattr")
            && getFileStore(target).supportsFileAttributeView("xattr")) {
          checkUserDefinedFileAttributes(
              readUserDefinedFileAttributes(source), readUserDefinedFileAttributes(target));
        }
      }
    }
  }
Exemplo n.º 3
0
    public void initialize(InputSplit genericSplit, TaskAttemptContext context) throws IOException {
      FileSplit split = (FileSplit) genericSplit;
      Configuration job = context.getConfiguration();
      m_Sb.setLength(0);
      m_Start = split.getStart();
      m_End = m_Start + split.getLength();
      final Path file = split.getPath();
      compressionCodecs = new CompressionCodecFactory(job);
      final CompressionCodec codec = compressionCodecs.getCodec(file);

      // open the file and seek to the m_Start of the split
      FileSystem fs = file.getFileSystem(job);
      //  getFileStatus fileStatus = fs.getFileStatus(split.getPath());
      //noinspection deprecation
      @SuppressWarnings(value = "deprecated")
      long length = fs.getLength(file);
      FSDataInputStream fileIn = fs.open(split.getPath());
      if (m_Start > 0) fileIn.seek(m_Start);
      if (codec != null) {
        CompressionInputStream inputStream = codec.createInputStream(fileIn);
        m_Input = new BufferedReader(new InputStreamReader(inputStream));
        m_End = length;
      } else {
        m_Input = new BufferedReader(new InputStreamReader(fileIn));
      }
      m_Current = m_Start;
      m_Key = split.getPath().getName();
    }
Exemplo n.º 4
0
  /*
   * Fetch a file that is in a Hadoop file system. Return a local File.
   * Interruptible.
   */
  private File hdfsFetch(Path fromPath, Reporter reporter)
      throws IOException, InterruptedException {
    UUID uniqueId = UUID.randomUUID();
    File toFile = new File(tempDir, uniqueId.toString() + "/" + fromPath.getName());
    File toDir = new File(toFile.getParent());
    if (toDir.exists()) {
      FileUtils.deleteDirectory(toDir);
    }
    toDir.mkdirs();
    Path toPath = new Path(toFile.getCanonicalPath());

    FileSystem fS = fromPath.getFileSystem(hadoopConf);
    FileSystem tofS = FileSystem.getLocal(hadoopConf);

    Throttler throttler = new Throttler((double) bytesPerSecThrottle);
    try {
      for (FileStatus fStatus : fS.globStatus(fromPath)) {
        log.info("Copying " + fStatus.getPath() + " to " + toPath);
        long bytesSoFar = 0;

        FSDataInputStream iS = fS.open(fStatus.getPath());
        FSDataOutputStream oS = tofS.create(toPath);

        byte[] buffer = new byte[downloadBufferSize];

        int nRead;
        while ((nRead = iS.read(buffer, 0, buffer.length)) != -1) {
          // Needed to being able to be interrupted at any moment.
          if (Thread.interrupted()) {
            iS.close();
            oS.close();
            cleanDirNoExceptions(toDir);
            throw new InterruptedException();
          }
          bytesSoFar += nRead;
          oS.write(buffer, 0, nRead);
          throttler.incrementAndThrottle(nRead);
          if (bytesSoFar >= bytesToReportProgress) {
            reporter.progress(bytesSoFar);
            bytesSoFar = 0l;
          }
        }

        if (reporter != null) {
          reporter.progress(bytesSoFar);
        }

        oS.close();
        iS.close();
      }

      return toDir;
    } catch (ClosedByInterruptException e) {
      // This can be thrown by the method read.
      cleanDirNoExceptions(toDir);
      throw new InterruptedIOException();
    }
  }
Exemplo n.º 5
0
  /**
   * Add an file path to the current set of classpath entries It adds the file to cache as well.
   *
   * @param file Path of the file to be added
   * @param conf Configuration that contains the classpath setting
   */
  public static void addFileToClassPath(Path file, Configuration conf) throws IOException {
    String classpath = conf.get("mapred.job.classpath.files");
    conf.set(
        "mapred.job.classpath.files",
        classpath == null
            ? file.toString()
            : classpath + System.getProperty("path.separator") + file.toString());
    URI uri = file.makeQualified(file.getFileSystem(conf)).toUri();

    addCacheFile(uri, conf);
  }
Exemplo n.º 6
0
  /**
   * Generate the list of files and make them into FileSplits. This needs to be copied to insert a
   * filter on acceptable data
   */
  @Override
  public List<InputSplit> getSplits(JobContext job) throws IOException {
    long minSize = Math.max(getFormatMinSplitSize(), getMinSplitSize(job));
    long maxSize = getMaxSplitSize(job);
    long desiredMappers =
        job.getConfiguration().getLong("org.systemsbiology.jxtandem.DesiredXMLInputMappers", 0);

    // generate splits
    List<InputSplit> splits = new ArrayList<InputSplit>();
    List<FileStatus> fileStatuses = listStatus(job);
    boolean forceNumberMappers = fileStatuses.size() == 1;
    for (FileStatus file : fileStatuses) {
      Path path = file.getPath();
      if (!isPathAcceptable(path)) // filter acceptable data
      continue;
      FileSystem fs = path.getFileSystem(job.getConfiguration());
      long length = file.getLen();
      BlockLocation[] blkLocations = fs.getFileBlockLocations(file, 0, length);
      if ((length != 0) && isSplitable(job, path)) {
        long blockSize = file.getBlockSize();
        // use desired mappers to force more splits
        if (forceNumberMappers && desiredMappers > 0)
          maxSize = Math.min(maxSize, (length / desiredMappers));

        long splitSize = computeSplitSize(blockSize, minSize, maxSize);

        long bytesRemaining = length;
        while (withinSlop(splitSize, bytesRemaining)) {
          int blkIndex = getBlockIndex(blkLocations, length - bytesRemaining);
          splits.add(
              new FileSplit(
                  path, length - bytesRemaining, splitSize, blkLocations[blkIndex].getHosts()));
          bytesRemaining -= splitSize;
        }

        if (bytesRemaining != 0) {
          splits.add(
              new FileSplit(
                  path,
                  length - bytesRemaining,
                  bytesRemaining,
                  blkLocations[blkLocations.length - 1].getHosts()));
        }
      } else if (length != 0) {
        splits.add(new FileSplit(path, 0, length, blkLocations[0].getHosts()));
      } else {
        // Create empty hosts array for zero length files
        splits.add(new FileSplit(path, 0, length, new String[0]));
      }
    }
    System.out.println("Total # of splits: " + splits.size());
    //     LOG.debug("Total # of splits: " + splits.size());
    return splits;
  }
Exemplo n.º 7
0
 /** Sanity check for srcPath */
 private static void checkSrcPath(Configuration conf, List<Path> srcPaths) throws IOException {
   List<IOException> rslt = new ArrayList<IOException>();
   for (Path p : srcPaths) {
     FileSystem fs = p.getFileSystem(conf);
     if (!fs.exists(p)) {
       rslt.add(new IOException("Input source " + p + " does not exist."));
     }
   }
   if (!rslt.isEmpty()) {
     throw new InvalidInputException(rslt);
   }
 }
Exemplo n.º 8
0
    /**
     * Produce splits such that each is no greater than the quotient of the total size and the
     * number of splits requested.
     *
     * @param job The handle to the JobConf object
     * @param numSplits Number of splits requested
     */
    public InputSplit[] getSplits(JobConf job, int numSplits) throws IOException {
      int cnfiles = job.getInt(SRC_COUNT_LABEL, -1);
      long cbsize = job.getLong(TOTAL_SIZE_LABEL, -1);
      String srcfilelist = job.get(SRC_LIST_LABEL, "");
      if (cnfiles < 0 || cbsize < 0 || "".equals(srcfilelist)) {
        throw new RuntimeException(
            "Invalid metadata: #files("
                + cnfiles
                + ") total_size("
                + cbsize
                + ") listuri("
                + srcfilelist
                + ")");
      }
      Path src = new Path(srcfilelist);
      FileSystem fs = src.getFileSystem(job);
      FileStatus srcst = fs.getFileStatus(src);

      ArrayList<FileSplit> splits = new ArrayList<FileSplit>(numSplits);
      LongWritable key = new LongWritable();
      FilePair value = new FilePair();
      final long targetsize = cbsize / numSplits;
      long pos = 0L;
      long last = 0L;
      long acc = 0L;
      long cbrem = srcst.getLen();
      SequenceFile.Reader sl = null;
      try {
        sl = new SequenceFile.Reader(fs, src, job);
        for (; sl.next(key, value); last = sl.getPosition()) {
          // if adding this split would put this split past the target size,
          // cut the last split and put this next file in the next split.
          if (acc + key.get() > targetsize && acc != 0) {
            long splitsize = last - pos;
            splits.add(new FileSplit(src, pos, splitsize, (String[]) null));
            cbrem -= splitsize;
            pos = last;
            acc = 0L;
          }
          acc += key.get();
        }
      } finally {
        checkAndClose(sl);
      }
      if (cbrem != 0) {
        splits.add(new FileSplit(src, pos, cbrem, (String[]) null));
      }

      return splits.toArray(new FileSplit[splits.size()]);
    }
Exemplo n.º 9
0
  private static URI addArchiveToClassPathHelper(Path archive, Configuration conf)
      throws IOException {

    String classpath = conf.get("mapred.job.classpath.archives");

    // the scheme/authority use ':' as separator. put the unqualified path in classpath
    String archivePath = archive.toUri().getPath();

    conf.set(
        "mapred.job.classpath.archives",
        classpath == null
            ? archivePath
            : classpath + System.getProperty("path.separator") + archivePath);
    return archive.makeQualified(archive.getFileSystem(conf)).toUri();
  }
Exemplo n.º 10
0
 private static List<Path> fetchFileList(Configuration conf, Path srcList) throws IOException {
   List<Path> result = new ArrayList<Path>();
   FileSystem fs = srcList.getFileSystem(conf);
   BufferedReader input = null;
   try {
     input = new BufferedReader(new InputStreamReader(fs.open(srcList)));
     String line = input.readLine();
     while (line != null) {
       result.add(new Path(line));
       line = input.readLine();
     }
   } finally {
     checkAndClose(input);
   }
   return result;
 }
Exemplo n.º 11
0
 /**
  * Mapper configuration. Extracts source and destination file system, as well as top-level paths
  * on source and destination directories. Gets the named file systems, to be used later in map.
  */
 public void configure(JobConf job) {
   destPath = new Path(job.get(DST_DIR_LABEL, "/"));
   try {
     destFileSys = destPath.getFileSystem(job);
   } catch (IOException ex) {
     throw new RuntimeException("Unable to get the named file system.", ex);
   }
   sizeBuf = job.getInt("copy.buf.size", 128 * 1024);
   buffer = new byte[sizeBuf];
   ignoreReadFailures = job.getBoolean(Options.IGNORE_READ_FAILURES.propertyname, false);
   preserve_status = job.getBoolean(Options.PRESERVE_STATUS.propertyname, false);
   if (preserve_status) {
     preseved = FileAttribute.parse(job.get(PRESERVE_STATUS_LABEL));
   }
   update = job.getBoolean(Options.UPDATE.propertyname, false);
   overwrite = !update && job.getBoolean(Options.OVERWRITE.propertyname, false);
   this.job = job;
 }
 public static void recursePath(Configuration conf, Path path, Job job) {
   try {
     FileSystem fs = path.getFileSystem(conf);
     FileStatus[] fstats = fs.listStatus(path);
     if (fstats != null) {
       for (FileStatus f : fstats) {
         Path p = f.getPath();
         ;
         if (fs.isFile(p)) {
           // connection times out otherwise
           System.err.println("file:" + p.toString());
           FileInputFormat.addInputPath(job, p);
         } else {
           System.err.println("dir:" + p.toString());
           recursePath(conf, p, job);
         }
       }
     }
   } catch (IOException e) {
     // shouldn't be here
     throw new RuntimeException(e);
   }
 }
Exemplo n.º 13
0
 /**
  * Add a file path to the current set of classpath entries. It adds the file to cache as well.
  * Intended to be used by user code.
  *
  * @deprecated Please use {@link #addFileToClassPath(Path, Configuration, FileSystem)} instead.
  *     The {@code FileSystem} should be obtained within an appropriate {@code doAs}.
  * @param file Path of the file to be added
  * @param conf Configuration that contains the classpath setting
  */
 @Deprecated
 public static void addFileToClassPath(Path file, Configuration conf) throws IOException {
   addFileToClassPath(file, conf, file.getFileSystem(conf));
 }
Exemplo n.º 14
0
 /**
  * Add an archive path to the current set of classpath entries. It adds the archive to cache as
  * well. Intended to be used by user code.
  *
  * @deprecated Please use {@link #addArchiveToClassPath(Path, Configuration, FileSystem)} instead.
  *     The {@code FileSystem} should be obtained within an appropriate {@code doAs}.
  * @param archive Path of the archive to be added
  * @param conf Configuration that contains the classpath setting
  */
 @Deprecated
 public static void addArchiveToClassPath(Path archive, Configuration conf) throws IOException {
   addArchiveToClassPath(archive, conf, archive.getFileSystem(conf));
 }
Exemplo n.º 15
0
 /** Fully delete dir */
 static void fullyDelete(String dir, Configuration conf) throws IOException {
   if (dir != null) {
     Path tmp = new Path(dir);
     tmp.getFileSystem(conf).delete(tmp, true);
   }
 }
Exemplo n.º 16
0
  // move source to target with verification
  static void moveAndVerify(Path source, Path target, CopyOption... options) throws IOException {
    // read attributes before file is moved
    BasicFileAttributes basicAttributes = null;
    PosixFileAttributes posixAttributes = null;
    DosFileAttributes dosAttributes = null;
    Map<String, ByteBuffer> namedAttributes = null;

    // get file attributes of source file
    String os = System.getProperty("os.name");
    if (os.startsWith("Windows")) {
      dosAttributes = readAttributes(source, DosFileAttributes.class, NOFOLLOW_LINKS);
      basicAttributes = dosAttributes;
    } else {
      posixAttributes = readAttributes(source, PosixFileAttributes.class, NOFOLLOW_LINKS);
      basicAttributes = posixAttributes;
    }
    if (basicAttributes == null)
      basicAttributes = readAttributes(source, BasicFileAttributes.class, NOFOLLOW_LINKS);

    // hash file contents if regular file
    int hash = (basicAttributes.isRegularFile()) ? computeHash(source) : 0;

    // record link target if symbolic link
    Path linkTarget = null;
    if (basicAttributes.isSymbolicLink()) linkTarget = readSymbolicLink(source);

    // read named attributes if available (and file is not a sym link)
    if (!basicAttributes.isSymbolicLink()
        && getFileStore(source).supportsFileAttributeView("xattr")) {
      namedAttributes = readUserDefinedFileAttributes(source);
    }

    // move file
    Path result = move(source, target, options);
    assertTrue(result == target);

    // verify source does not exist
    assertTrue(notExists(source));

    // verify file contents
    if (basicAttributes.isRegularFile()) {
      if (computeHash(target) != hash)
        throw new RuntimeException("Failed to verify move of regular file");
    }

    // verify link target
    if (basicAttributes.isSymbolicLink()) {
      if (!readSymbolicLink(target).equals(linkTarget))
        throw new RuntimeException("Failed to verify move of symbolic link");
    }

    // verify basic attributes
    checkBasicAttributes(
        basicAttributes, readAttributes(target, BasicFileAttributes.class, NOFOLLOW_LINKS));

    // verify other attributes when same provider
    if (source.getFileSystem().provider() == target.getFileSystem().provider()) {

      // verify POSIX attributes
      if (posixAttributes != null && !basicAttributes.isSymbolicLink() && testPosixAttributes) {
        checkPosixAttributes(
            posixAttributes, readAttributes(target, PosixFileAttributes.class, NOFOLLOW_LINKS));
      }

      // verify DOS attributes
      if (dosAttributes != null && !basicAttributes.isSymbolicLink()) {
        DosFileAttributes attrs = readAttributes(target, DosFileAttributes.class, NOFOLLOW_LINKS);
        checkDosAttributes(dosAttributes, attrs);
      }

      // verify named attributes
      if (namedAttributes != null && getFileStore(target).supportsFileAttributeView("xattr")) {
        checkUserDefinedFileAttributes(namedAttributes, readUserDefinedFileAttributes(target));
      }
    }
  }
Exemplo n.º 17
0
  /**
   * Initialize DFSCopyFileMapper specific job-configuration.
   *
   * @param conf : The dfs/mapred configuration.
   * @param jobConf : The handle to the jobConf object to be initialized.
   * @param args Arguments
   */
  private static void setup(Configuration conf, JobConf jobConf, final Arguments args)
      throws IOException {
    jobConf.set(DST_DIR_LABEL, args.dst.toUri().toString());

    // set boolean values
    final boolean update = args.flags.contains(Options.UPDATE);
    final boolean overwrite = !update && args.flags.contains(Options.OVERWRITE);
    jobConf.setBoolean(Options.UPDATE.propertyname, update);
    jobConf.setBoolean(Options.OVERWRITE.propertyname, overwrite);
    jobConf.setBoolean(
        Options.IGNORE_READ_FAILURES.propertyname,
        args.flags.contains(Options.IGNORE_READ_FAILURES));
    jobConf.setBoolean(
        Options.PRESERVE_STATUS.propertyname, args.flags.contains(Options.PRESERVE_STATUS));

    final String randomId = getRandomId();
    JobClient jClient = new JobClient(jobConf);
    Path jobDirectory = new Path(jClient.getSystemDir(), NAME + "_" + randomId);
    jobConf.set(JOB_DIR_LABEL, jobDirectory.toString());

    FileSystem dstfs = args.dst.getFileSystem(conf);
    boolean dstExists = dstfs.exists(args.dst);
    boolean dstIsDir = false;
    if (dstExists) {
      dstIsDir = dstfs.getFileStatus(args.dst).isDir();
    }

    // default logPath
    Path logPath = args.log;
    if (logPath == null) {
      String filename = "_distcp_logs_" + randomId;
      if (!dstExists || !dstIsDir) {
        Path parent = args.dst.getParent();
        if (!dstfs.exists(parent)) {
          dstfs.mkdirs(parent);
        }
        logPath = new Path(parent, filename);
      } else {
        logPath = new Path(args.dst, filename);
      }
    }
    FileOutputFormat.setOutputPath(jobConf, logPath);

    // create src list, dst list
    FileSystem jobfs = jobDirectory.getFileSystem(jobConf);

    Path srcfilelist = new Path(jobDirectory, "_distcp_src_files");
    jobConf.set(SRC_LIST_LABEL, srcfilelist.toString());
    SequenceFile.Writer src_writer =
        SequenceFile.createWriter(
            jobfs,
            jobConf,
            srcfilelist,
            LongWritable.class,
            FilePair.class,
            SequenceFile.CompressionType.NONE);

    Path dstfilelist = new Path(jobDirectory, "_distcp_dst_files");
    SequenceFile.Writer dst_writer =
        SequenceFile.createWriter(
            jobfs, jobConf, dstfilelist, Text.class, Text.class, SequenceFile.CompressionType.NONE);

    Path dstdirlist = new Path(jobDirectory, "_distcp_dst_dirs");
    jobConf.set(DST_DIR_LIST_LABEL, dstdirlist.toString());
    SequenceFile.Writer dir_writer =
        SequenceFile.createWriter(
            jobfs,
            jobConf,
            dstdirlist,
            Text.class,
            FilePair.class,
            SequenceFile.CompressionType.NONE);

    // handle the case where the destination directory doesn't exist
    // and we've only a single src directory OR we're updating/overwriting
    // the contents of the destination directory.
    final boolean special = (args.srcs.size() == 1 && !dstExists) || update || overwrite;
    int srcCount = 0, cnsyncf = 0, dirsyn = 0;
    long fileCount = 0L, byteCount = 0L, cbsyncs = 0L;
    try {
      for (Iterator<Path> srcItr = args.srcs.iterator(); srcItr.hasNext(); ) {
        final Path src = srcItr.next();
        FileSystem srcfs = src.getFileSystem(conf);
        FileStatus srcfilestat = srcfs.getFileStatus(src);
        Path root = special && srcfilestat.isDir() ? src : src.getParent();
        if (srcfilestat.isDir()) {
          ++srcCount;
        }

        Stack<FileStatus> pathstack = new Stack<FileStatus>();
        for (pathstack.push(srcfilestat); !pathstack.empty(); ) {
          FileStatus cur = pathstack.pop();
          FileStatus[] children = srcfs.listStatus(cur.getPath());
          for (int i = 0; i < children.length; i++) {
            boolean skipfile = false;
            final FileStatus child = children[i];
            final String dst = makeRelative(root, child.getPath());
            ++srcCount;

            if (child.isDir()) {
              pathstack.push(child);
            } else {
              // skip file if the src and the dst files are the same.
              skipfile = update && sameFile(srcfs, child, dstfs, new Path(args.dst, dst));
              // skip file if it exceed file limit or size limit
              skipfile |=
                  fileCount == args.filelimit || byteCount + child.getLen() > args.sizelimit;

              if (!skipfile) {
                ++fileCount;
                byteCount += child.getLen();

                if (LOG.isTraceEnabled()) {
                  LOG.trace("adding file " + child.getPath());
                }

                ++cnsyncf;
                cbsyncs += child.getLen();
                if (cnsyncf > SYNC_FILE_MAX || cbsyncs > BYTES_PER_MAP) {
                  src_writer.sync();
                  dst_writer.sync();
                  cnsyncf = 0;
                  cbsyncs = 0L;
                }
              }
            }

            if (!skipfile) {
              src_writer.append(
                  new LongWritable(child.isDir() ? 0 : child.getLen()), new FilePair(child, dst));
            }

            dst_writer.append(new Text(dst), new Text(child.getPath().toString()));
          }

          if (cur.isDir()) {
            String dst = makeRelative(root, cur.getPath());
            dir_writer.append(new Text(dst), new FilePair(cur, dst));
            if (++dirsyn > SYNC_FILE_MAX) {
              dirsyn = 0;
              dir_writer.sync();
            }
          }
        }
      }
    } finally {
      checkAndClose(src_writer);
      checkAndClose(dst_writer);
      checkAndClose(dir_writer);
    }

    FileStatus dststatus = null;
    try {
      dststatus = dstfs.getFileStatus(args.dst);
    } catch (FileNotFoundException fnfe) {
      LOG.info(args.dst + " does not exist.");
    }

    // create dest path dir if copying > 1 file
    if (dststatus == null) {
      if (srcCount > 1 && !dstfs.mkdirs(args.dst)) {
        throw new IOException("Failed to create" + args.dst);
      }
    }

    final Path sorted = new Path(jobDirectory, "_distcp_sorted");
    checkDuplication(jobfs, dstfilelist, sorted, conf);

    if (dststatus != null && args.flags.contains(Options.DELETE)) {
      deleteNonexisting(dstfs, dststatus, sorted, jobfs, jobDirectory, jobConf, conf);
    }

    Path tmpDir =
        new Path(
            (dstExists && !dstIsDir) || (!dstExists && srcCount == 1)
                ? args.dst.getParent()
                : args.dst,
            "_distcp_tmp_" + randomId);
    jobConf.set(TMP_DIR_LABEL, tmpDir.toUri().toString());
    LOG.info("srcCount=" + srcCount);
    jobConf.setInt(SRC_COUNT_LABEL, srcCount);
    jobConf.setLong(TOTAL_SIZE_LABEL, byteCount);
    setMapCount(byteCount, jobConf);
  }
Exemplo n.º 18
0
    static void checkRecords(Configuration defaults, Path sortInput, Path sortOutput)
        throws IOException {
      FileSystem inputfs = sortInput.getFileSystem(defaults);
      FileSystem outputfs = sortOutput.getFileSystem(defaults);
      FileSystem defaultfs = FileSystem.get(defaults);
      JobConf jobConf = new JobConf(defaults, RecordStatsChecker.class);
      jobConf.setJobName("sortvalidate-recordstats-checker");

      int noSortReduceTasks = outputfs.listStatus(sortOutput, sortPathsFilter).length;
      jobConf.setInt("sortvalidate.sort.reduce.tasks", noSortReduceTasks);
      int noSortInputpaths = inputfs.listStatus(sortInput).length;

      jobConf.setInputFormat(NonSplitableSequenceFileInputFormat.class);
      jobConf.setOutputFormat(SequenceFileOutputFormat.class);

      jobConf.setOutputKeyClass(IntWritable.class);
      jobConf.setOutputValueClass(RecordStatsChecker.RecordStatsWritable.class);

      jobConf.setMapperClass(Map.class);
      jobConf.setCombinerClass(Reduce.class);
      jobConf.setReducerClass(Reduce.class);

      jobConf.setNumMapTasks(noSortReduceTasks);
      jobConf.setNumReduceTasks(1);

      FileInputFormat.setInputPaths(jobConf, sortInput);
      FileInputFormat.addInputPath(jobConf, sortOutput);
      Path outputPath = new Path("/tmp/sortvalidate/recordstatschecker");
      if (defaultfs.exists(outputPath)) {
        defaultfs.delete(outputPath, true);
      }
      FileOutputFormat.setOutputPath(jobConf, outputPath);

      // Uncomment to run locally in a single process
      // job_conf.set("mapred.job.tracker", "local");
      Path[] inputPaths = FileInputFormat.getInputPaths(jobConf);
      System.out.println(
          "\nSortValidator.RecordStatsChecker: Validate sort "
              + "from "
              + inputPaths[0]
              + " ("
              + noSortInputpaths
              + " files), "
              + inputPaths[1]
              + " ("
              + noSortReduceTasks
              + " files) into "
              + FileOutputFormat.getOutputPath(jobConf)
              + " with 1 reducer.");
      Date startTime = new Date();
      System.out.println("Job started: " + startTime);
      JobClient.runJob(jobConf);
      Date end_time = new Date();
      System.out.println("Job ended: " + end_time);
      System.out.println(
          "The job took " + (end_time.getTime() - startTime.getTime()) / 1000 + " seconds.");

      // Check to ensure that the statistics of the
      // framework's sort-input and sort-output match
      SequenceFile.Reader stats =
          new SequenceFile.Reader(defaultfs, new Path(outputPath, "part-00000"), defaults);
      IntWritable k1 = new IntWritable();
      IntWritable k2 = new IntWritable();
      RecordStatsWritable v1 = new RecordStatsWritable();
      RecordStatsWritable v2 = new RecordStatsWritable();
      if (!stats.next(k1, v1)) {
        throw new IOException("Failed to read record #1 from reduce's output");
      }
      if (!stats.next(k2, v2)) {
        throw new IOException("Failed to read record #2 from reduce's output");
      }

      if ((v1.getBytes() != v2.getBytes())
          || (v1.getRecords() != v2.getRecords())
          || v1.getChecksum() != v2.getChecksum()) {
        throw new IOException(
            "("
                + v1.getBytes()
                + ", "
                + v1.getRecords()
                + ", "
                + v1.getChecksum()
                + ") v/s ("
                + v2.getBytes()
                + ", "
                + v2.getRecords()
                + ", "
                + v2.getChecksum()
                + ")");
      }
    }