@Override protected void writeAttributes(BinaryInteractionEvidence object) throws XMLStreamException { // write attributes if (!object.getAnnotations().isEmpty()) { // write start attribute list getStreamWriter().writeStartElement("attributeList"); for (Object ann : object.getAnnotations()) { getAttributeWriter().write((Annotation) ann); } for (Object c : object.getChecksums()) { getChecksumWriter().write((Checksum) c); } // write complex expansion if any if (object.getComplexExpansion() != null) { super.writeAttribute( object.getComplexExpansion().getShortName(), object.getComplexExpansion().getMIIdentifier()); } // write end attributeList getStreamWriter().writeEndElement(); } // write checksum else if (!object.getChecksums().isEmpty()) { // write start attribute list getStreamWriter().writeStartElement("attributeList"); for (Object c : object.getChecksums()) { getChecksumWriter().write((Checksum) c); } // write complex expansion if any if (object.getComplexExpansion() != null) { super.writeAttribute( object.getComplexExpansion().getShortName(), object.getComplexExpansion().getMIIdentifier()); } // write end attributeList getStreamWriter().writeEndElement(); } // write complex expansion if any else if (object.getComplexExpansion() != null) { // write start attribute list getStreamWriter().writeStartElement("attributeList"); super.writeAttribute( object.getComplexExpansion().getShortName(), object.getComplexExpansion().getMIIdentifier()); // write end attributeList getStreamWriter().writeEndElement(); } }
@Override protected CvTerm writeExperiments(BinaryInteractionEvidence object) throws XMLStreamException { super.writeExperiments(object); return writeExperimentDescription(); }
@Override protected void initialiseParticipantWriter() { super.setParticipantWriter( new XmlParticipantEvidenceWriter(getStreamWriter(), getObjectIndex())); }