@Override
protected void writeAttributes(BinaryInteractionEvidence object) throws XMLStreamException {
// write attributes
if (!object.getAnnotations().isEmpty()) {
// write start attribute list
getStreamWriter().writeStartElement("attributeList");
for (Object ann : object.getAnnotations()) {
getAttributeWriter().write((Annotation) ann);
}
for (Object c : object.getChecksums()) {
getChecksumWriter().write((Checksum) c);
}
// write complex expansion if any
if (object.getComplexExpansion() != null) {
super.writeAttribute(
object.getComplexExpansion().getShortName(),
object.getComplexExpansion().getMIIdentifier());
}
// write end attributeList
getStreamWriter().writeEndElement();
}
// write checksum
else if (!object.getChecksums().isEmpty()) {
// write start attribute list
getStreamWriter().writeStartElement("attributeList");
for (Object c : object.getChecksums()) {
getChecksumWriter().write((Checksum) c);
}
// write complex expansion if any
if (object.getComplexExpansion() != null) {
super.writeAttribute(
object.getComplexExpansion().getShortName(),
object.getComplexExpansion().getMIIdentifier());
}
// write end attributeList
getStreamWriter().writeEndElement();
}
// write complex expansion if any
else if (object.getComplexExpansion() != null) {
// write start attribute list
getStreamWriter().writeStartElement("attributeList");
super.writeAttribute(
object.getComplexExpansion().getShortName(),
object.getComplexExpansion().getMIIdentifier());
// write end attributeList
getStreamWriter().writeEndElement();
}
}
@Override
protected CvTerm writeExperiments(BinaryInteractionEvidence object) throws XMLStreamException {
super.writeExperiments(object);
return writeExperimentDescription();
}
@Override
protected void initialiseParticipantWriter() {
super.setParticipantWriter(
new XmlParticipantEvidenceWriter(getStreamWriter(), getObjectIndex()));
}