private static Entry infoToPlasmidForField(Entry entry, String value, EntryField field) {
if (!entry.getRecordType().equalsIgnoreCase(EntryType.PLASMID.toString())) return entry;
Plasmid plasmid = (Plasmid) entry;
switch (field) {
case BACKBONE:
plasmid.setBackbone(value);
return plasmid;
case PROMOTERS:
plasmid.setPromoters(value);
return plasmid;
case REPLICATES_IN:
plasmid.setReplicatesIn(value);
return plasmid;
case CIRCULAR:
plasmid.setCircular(
"yes".equalsIgnoreCase(value)
|| "true".equalsIgnoreCase(value)
|| "circular".equalsIgnoreCase(value));
return plasmid;
case ORIGIN_OF_REPLICATION:
plasmid.setOriginOfReplication(value);
return plasmid;
default:
return plasmid;
}
}
private static Entry infoToSeedForField(Entry entry, String value, EntryField field) {
if (!entry.getRecordType().equalsIgnoreCase(EntryType.ARABIDOPSIS.toString())) return entry;
ArabidopsisSeed seed = (ArabidopsisSeed) entry;
switch (field) {
case HOMOZYGOSITY:
seed.setHomozygosity(value);
return seed;
case ECOTYPE:
seed.setEcotype(value);
return seed;
case HARVEST_DATE:
if (value != null && !value.isEmpty()) {
try {
Date date = SimpleDateFormat.getDateInstance(DateFormat.SHORT).parse(value);
seed.setHarvestDate(date);
} catch (ParseException ia) {
Logger.error(ia);
}
}
return seed;
case GENERATION:
seed.setGeneration(Generation.fromString(value));
return seed;
case SENT_TO_ABRC:
seed.setSentToABRC("yes".equalsIgnoreCase(value) || "true".equalsIgnoreCase(value));
return seed;
case PLANT_TYPE:
seed.setPlantType(PlantType.fromString(value));
return seed;
case PARENTS:
seed.setParents(value);
return seed;
default:
return seed;
}
}
private static Entry infoToStrainForField(Entry entry, String value, EntryField field) {
if (!entry.getRecordType().equalsIgnoreCase(EntryType.STRAIN.toString())) return entry;
Strain strain = (Strain) entry;
switch (field) {
case PARENTAL_STRAIN:
strain.setHost(value);
return strain;
case GENOTYPE_OR_PHENOTYPE:
strain.setGenotypePhenotype(value);
return strain;
case PLASMIDS:
strain.setPlasmids(value);
return strain;
default:
return strain;
}
}
