private static Entry infoToPlasmidForField(Entry entry, String value, EntryField field) { if (!entry.getRecordType().equalsIgnoreCase(EntryType.PLASMID.toString())) return entry; Plasmid plasmid = (Plasmid) entry; switch (field) { case BACKBONE: plasmid.setBackbone(value); return plasmid; case PROMOTERS: plasmid.setPromoters(value); return plasmid; case REPLICATES_IN: plasmid.setReplicatesIn(value); return plasmid; case CIRCULAR: plasmid.setCircular( "yes".equalsIgnoreCase(value) || "true".equalsIgnoreCase(value) || "circular".equalsIgnoreCase(value)); return plasmid; case ORIGIN_OF_REPLICATION: plasmid.setOriginOfReplication(value); return plasmid; default: return plasmid; } }
private static Entry infoToSeedForField(Entry entry, String value, EntryField field) { if (!entry.getRecordType().equalsIgnoreCase(EntryType.ARABIDOPSIS.toString())) return entry; ArabidopsisSeed seed = (ArabidopsisSeed) entry; switch (field) { case HOMOZYGOSITY: seed.setHomozygosity(value); return seed; case ECOTYPE: seed.setEcotype(value); return seed; case HARVEST_DATE: if (value != null && !value.isEmpty()) { try { Date date = SimpleDateFormat.getDateInstance(DateFormat.SHORT).parse(value); seed.setHarvestDate(date); } catch (ParseException ia) { Logger.error(ia); } } return seed; case GENERATION: seed.setGeneration(Generation.fromString(value)); return seed; case SENT_TO_ABRC: seed.setSentToABRC("yes".equalsIgnoreCase(value) || "true".equalsIgnoreCase(value)); return seed; case PLANT_TYPE: seed.setPlantType(PlantType.fromString(value)); return seed; case PARENTS: seed.setParents(value); return seed; default: return seed; } }
private static Entry infoToStrainForField(Entry entry, String value, EntryField field) { if (!entry.getRecordType().equalsIgnoreCase(EntryType.STRAIN.toString())) return entry; Strain strain = (Strain) entry; switch (field) { case PARENTAL_STRAIN: strain.setHost(value); return strain; case GENOTYPE_OR_PHENOTYPE: strain.setGenotypePhenotype(value); return strain; case PLASMIDS: strain.setPlasmids(value); return strain; default: return strain; } }