@SuppressWarnings({"rawtypes", "unchecked"})
private final ContinuousMapping parseContinuous(
String columnName,
Class<?> type,
VisualProperty<?> vp,
VisualMappingFunctionFactory factory,
JsonNode mappingNode) {
final ContinuousMapping mapping =
(ContinuousMapping) factory.createVisualMappingFunction(columnName, type, vp);
for (JsonNode point : mappingNode.get("points")) {
JsonNode val = point.get("value");
JsonNode lesser = point.get("lesser");
JsonNode equal = point.get("equal");
JsonNode greater = point.get("greater");
final BoundaryRangeValues newPoint =
new BoundaryRangeValues(
vp.parseSerializableString(lesser.asText()),
vp.parseSerializableString(equal.asText()),
vp.parseSerializableString(greater.asText()));
mapping.addPoint(val.asDouble(), newPoint);
}
return mapping;
}
private String getSingleVp(
final String visualProperty,
final View<? extends CyIdentifiable> view,
final Collection<VisualProperty<?>> vps) {
VisualProperty<?> targetVp = null;
for (final VisualProperty<?> vp : vps) {
if (vp.getIdString().equals(visualProperty)) {
targetVp = vp;
break;
}
}
if (targetVp == null) {
throw getError(
"Could not find such Visual Property: " + visualProperty,
new NotFoundException(),
Response.Status.NOT_FOUND);
}
try {
return styleSerializer.serializeSingleVisualProp(view, targetVp);
} catch (IOException e) {
throw getError(
"Could not serialize the view object.", e, Response.Status.INTERNAL_SERVER_ERROR);
}
}
private void applyCustomGraphicsPosition(
final VisualProperty<?> vp, final ObjectPosition position) {
// No need to modify
if (position == null) return;
// Use dependency to retrieve its parent.
final VisualLexiconNode lexNode = lexicon.getVisualLexiconNode(vp);
final Collection<VisualLexiconNode> leavs = lexNode.getParent().getChildren();
VisualProperty<?> parent = null;
for (VisualLexiconNode vlNode : leavs) {
if (vlNode.getVisualProperty().getRange().getType().equals(CyCustomGraphics.class)) {
parent = vlNode.getVisualProperty();
break;
}
}
if (parent == null)
throw new NullPointerException(
"Associated Custom Graphics VP is missing for " + vp.getDisplayName());
final Set<CustomGraphicLayer> currentCG = cgMap.get(parent);
if (currentCG == null || currentCG.size() == 0) return;
final Set<CustomGraphicLayer> newList = new HashSet<CustomGraphicLayer>();
for (CustomGraphicLayer g : currentCG)
newList.add(moveCustomGraphicsToNewPosition(g, position));
currentCG.clear();
currentCG.addAll(newList);
this.cgMap.put(parent, currentCG);
}
@SuppressWarnings({"rawtypes", "unchecked"})
private final void parseDefaults(
final JsonNode defaults, final VisualStyle style, final VisualLexicon lexicon) {
for (final JsonNode vpNode : defaults) {
String vpName = vpNode.get(MAPPING_VP).textValue();
final VisualProperty vp = getVisualProperty(vpName, lexicon);
final JsonNode value = vpNode.get("value");
if (vp == null || value == null) {
continue;
}
Object parsedValue = null;
if (value.isTextual()) {
parsedValue = vp.parseSerializableString(value.asText());
} else {
parsedValue = vp.parseSerializableString(value.toString());
}
style.setDefaultValue(vp, parsedValue);
}
}
/**
* Directly update view object.
*
* @param view
* @param rootNode
* @param lexicon
*/
public Response updateView(
final View<? extends CyIdentifiable> view,
final JsonNode rootNode,
final VisualLexicon lexicon) {
for (final JsonNode vpNode : rootNode) {
String vpName = vpNode.get(MAPPING_VP).textValue();
final VisualProperty<?> vp = getVisualProperty(vpName, lexicon);
final JsonNode value = vpNode.get(MAPPING_DISCRETE_VALUE);
if (vp == null || value == null) {
continue;
}
Object parsedValue = null;
if (value.isTextual()) {
parsedValue = vp.parseSerializableString(value.asText());
} else {
parsedValue = vp.parseSerializableString(value.toString());
}
view.setVisualProperty(vp, parsedValue);
}
return Response.ok().build();
}
/**
* Apply bypass
*
* @param netView
* @param graphObjectView
* @param vp
*/
private final void applBypassValue(
final CyNetworkView netView,
final View<? extends CyIdentifiable> graphObjectView,
VisualProperty<?> vp) {
final ValueEditor<Object> editor =
(ValueEditor<Object>) editorManager.getValueEditor(vp.getRange().getType());
final Object bypassValue = editor.showEditor(null, graphObjectView.getVisualProperty(vp));
// Set lock for the vp
graphObjectView.setLockedValue(vp, bypassValue);
// Apply the new value only for the given view
// TODO don't do this, because it overwrites some bypassed values with default ones!!! Calling
// setLockedValue should be enough
// final CyRow row = netView.getModel().getRow(graphObjectView.getModel());
// vmm.getCurrentVisualStyle().apply(row, graphObjectView);
// Redraw the view
netView.updateView();
}
@SuppressWarnings({"rawtypes", "unchecked"})
private final DiscreteMapping parseDiscrete(
String columnName,
Class<?> type,
VisualProperty<?> vp,
VisualMappingFunctionFactory factory,
JsonNode discreteMapping) {
DiscreteMapping mapping =
(DiscreteMapping) factory.createVisualMappingFunction(columnName, type, vp);
final Map map = new HashMap();
for (JsonNode pair : discreteMapping) {
final Object key = parseKeyValue(type, pair.get(MAPPING_DISCRETE_KEY).textValue());
if (key != null) {
map.put(key, vp.parseSerializableString(pair.get(MAPPING_DISCRETE_VALUE).textValue()));
}
}
mapping.putAll(map);
return mapping;
}
@Override
@SuppressWarnings({"unchecked", "rawtypes"})
public void clearValueLock(final VisualProperty<?> vp) {
final boolean isDefault;
synchronized (graphView.m_lock) {
isDefault = !visualProperties.containsKey(vp);
}
super.clearValueLock(vp);
// Reset to the visual style default if visualProperties map doesn't contain this vp
if (isDefault) {
if (vp
== BasicVisualLexicon
.NODE_VISIBLE) // TODO: what if the default value of the visual style is different
// (e.g. invisible)?
applyVisualProperty((VisualProperty) vp, vp.getDefault());
else
graphView.nodeViewDefaultSupport.setViewDefault(
(VisualProperty) vp, graphView.m_nodeDetails.getDefaultValue(vp));
}
}
/**
* @param netView
* @param view a View<CyNode>, View<CyEdge> or View<CyNetwork> object
* @return
*/
public CyMenuItem build(final CyNetworkView netView, final View<? extends CyIdentifiable> view) {
final Class<? extends CyIdentifiable> targetClass = view.getModel().getClass();
final Queue<VisualLexiconNode> queue =
new PriorityQueue<VisualLexiconNode>(50, new VisualLexiconNodeComparator());
final Map<VisualLexiconNode, JMenuItem> menuMap = new HashMap<VisualLexiconNode, JMenuItem>();
final JMenu rootJMenu = new JMenu(ROOT_MENU_LABEL);
final CyMenuItem rootMenu = new CyMenuItem(rootJMenu, ROOT_GRAVITY);
queue.addAll(root.getChildren());
menuMap.put(root, rootMenu.getMenuItem());
// Node size, width and height
JMenuItem menuItemNodeSize = null;
JMenuItem menuItemNodeWidth = null;
JMenuItem menuItemNodeHeight = null;
final Set<VisualLexiconNode> nextNodes = new HashSet<VisualLexiconNode>();
while (!queue.isEmpty()) {
final VisualLexiconNode curretNode = queue.poll();
final VisualProperty<?> vp = curretNode.getVisualProperty();
if (vp.getTargetDataType().isAssignableFrom(targetClass)) {
final Collection<VisualLexiconNode> children = curretNode.getChildren();
nextNodes.addAll(children);
final JMenuItem menu;
if (children.isEmpty() && PropertySheetUtil.isCompatible(vp)) {
final boolean lock = view.isDirectlyLocked(vp);
if (lock) {
menu = new JMenu(vp.getDisplayName());
final JMenuItem clear = new JMenuItem("Clear");
clear.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
view.clearValueLock(vp);
netView.updateView();
}
});
final JMenuItem edit = new JMenuItem("Edit Bypass");
edit.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp);
}
});
menu.add(clear);
menu.add(edit);
// Update color
menu.setForeground(ENABLED_COLOR);
menu.setIcon(ENABLED_ICON);
menu.setFont(ENABLED_FONT);
VisualLexiconNode parent = curretNode.getParent();
while (parent != root) {
JMenuItem enabledPath = menuMap.get(parent);
enabledPath.setForeground(ENABLED_COLOR);
enabledPath.setIcon(ENABLED_ICON);
enabledPath.setFont(ENABLED_FONT);
parent = parent.getParent();
}
rootJMenu.setIcon(ENABLED_ICON);
rootJMenu.setForeground(ENABLED_COLOR);
rootJMenu.setFont(ENABLED_FONT);
vpSet.add(vp);
} else {
menu = new JMenuItem(vp.getDisplayName());
menu.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp);
}
});
if (vp.getDisplayName()
.equalsIgnoreCase(BasicVisualLexicon.NODE_WIDTH.getDisplayName())) {
menuItemNodeWidth = menu;
}
if (vp.getDisplayName()
.equalsIgnoreCase(BasicVisualLexicon.NODE_HEIGHT.getDisplayName())) {
menuItemNodeHeight = menu;
}
}
} else {
menu = new JMenu(vp.getDisplayName());
if (vp.getDisplayName().equalsIgnoreCase(BasicVisualLexicon.NODE_SIZE.getDisplayName())) {
menuItemNodeSize = menu;
vp_nodeSize = vp;
}
}
if (PropertySheetUtil.isCompatible(vp)) {
menuMap.get(curretNode.getParent()).add(menu);
menuMap.put(curretNode, menu);
}
}
if (queue.isEmpty()) {
queue.addAll(nextNodes);
nextNodes.clear();
}
}
// handle node size
if (menuItemNodeSize != null) {
//
JMenuItem menuItemNodeSize1 = new JMenuItem(vp_nodeSize.getDisplayName());
menuItemNodeSize1.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
applBypassValue(netView, view, vp_nodeSize);
}
});
menuItemNodeSize.add(menuItemNodeSize1);
// Check if nose size is locked
boolean nodeSizeIsLocked = false;
java.util.Iterator it =
vmm.getCurrentVisualStyle().getAllVisualPropertyDependencies().iterator();
while (it.hasNext()) {
org.cytoscape.view.vizmap.VisualPropertyDependency dep =
(org.cytoscape.view.vizmap.VisualPropertyDependency) it.next();
if (dep.getDisplayName().equalsIgnoreCase("Lock node width and height")
&& dep.isDependencyEnabled()) {
nodeSizeIsLocked = true;
}
}
if (nodeSizeIsLocked) {
// In case the Node size is locked, disable menuItem Node_width and Nod_height
if (menuItemNodeWidth != null) menuItemNodeWidth.setEnabled(false);
if (menuItemNodeHeight != null) menuItemNodeHeight.setEnabled(false);
} else {
// In case the Node size is not locked, disable menuItem Node_size
if (menuItemNodeSize1 != null) menuItemNodeSize1.setEnabled(false);
}
}
final JSeparator separator = new JSeparator();
final JMenuItem resetMenu = new JMenuItem("Reset All");
resetMenu.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
clearAll(netView, view);
}
});
rootJMenu.add(separator);
rootJMenu.add(resetMenu);
return rootMenu;
}
/** Edit all selected cells at once. This is for Discrete Mapping only. */
@Override
@SuppressWarnings({"rawtypes", "unchecked"})
public void actionPerformed(final ActionEvent e) {
final VizMapperMainPanel vizMapperMainPanel = getVizMapperMainPanel();
if (vizMapperMainPanel == null) return;
final VisualPropertySheet vpSheet = vizMapperMainPanel.getSelectedVisualPropertySheet();
if (vpSheet == null) return;
for (final VisualPropertySheetItem<?> vpSheetItem : vpSheet.getSelectedItems()) {
final VisualPropertySheetItemModel<?> model = vpSheetItem.getModel();
final PropertySheetTable table = vpSheetItem.getPropSheetPnl().getTable();
final int[] selected = table.getSelectedRows();
if (selected == null
|| selected.length == 0
|| !(model.getVisualMappingFunction() instanceof DiscreteMapping)) continue;
// Test with the first selected item
final DiscreteMapping dm = (DiscreteMapping) model.getVisualMappingFunction();
final VisualProperty vp = dm.getVisualProperty();
Object newValue = null;
try {
// Get new value
newValue =
editorManager.showVisualPropertyValueEditor(vizMapperMainPanel, vp, vp.getDefault());
} catch (Exception ex) {
logger.error("Could not edit value.", ex);
}
if (newValue == null) continue;
final Map<Object, Object> newValues = new HashMap<Object, Object>();
final Map<Object, Object> previousValues = new HashMap<Object, Object>();
for (int i = 0; i < selected.length; i++) {
final Item item = ((Item) table.getValueAt(selected[i], 0));
if (item != null && item.getProperty() instanceof VizMapperProperty) {
final VizMapperProperty<?, ?, ?> prop = (VizMapperProperty<?, ?, ?>) item.getProperty();
if (prop.getCellType() == CellType.DISCRETE) {
// Save the current value for undo
previousValues.put(prop.getKey(), prop.getValue());
// New value
newValues.put(prop.getKey(), newValue);
}
}
}
// Save the mapping->old_values for undo
if (!previousValues.isEmpty()) previousMappingValues.put(dm, previousValues);
// Save the mapping->new_values for redo
if (!newValues.isEmpty()) newMappingValues.put(dm, newValues);
// Update the visual mapping
dm.putAll(newValues);
}
// Undo support
if (!previousMappingValues.isEmpty()) {
final UndoSupport undo = servicesUtil.get(UndoSupport.class);
undo.postEdit(new EditSelectedDiscreteValuesEdit());
}
}
@Override
@SuppressWarnings("unchecked")
protected <T, V extends T> void applyVisualProperty(
final VisualProperty<? extends T> vpOriginal, V value) {
VisualProperty<?> vp = vpOriginal;
// Check to make sure our view hasn't gotten disconnected somewhere along the line
if (graphView.getNodeView(this.getModel()) == null) return;
// Null means set value to VP's default.
if (value == null) value = (V) vp.getDefault();
if (vp == DVisualLexicon.NODE_SHAPE) {
setShape(((NodeShape) value));
} else if (vp == DVisualLexicon.NODE_SELECTED_PAINT) {
setSelectedPaint((Paint) value);
} else if (vp == BasicVisualLexicon.NODE_SELECTED) {
setSelected((Boolean) value);
} else if (vp == BasicVisualLexicon.NODE_VISIBLE) {
if (((Boolean) value).booleanValue()) {
graphView.showGraphObject(this);
isVisible = true;
} else {
graphView.hideGraphObject(this);
isVisible = false;
}
} else if (vp == BasicVisualLexicon.NODE_FILL_COLOR) {
setUnselectedPaint((Paint) value);
} else if (vp == DVisualLexicon.NODE_BORDER_PAINT) {
setBorderPaint((Color) value);
} else if (vp == DVisualLexicon.NODE_BORDER_TRANSPARENCY) {
final Integer opacity = ((Number) value).intValue();
setBorderTransparency(opacity);
} else if (vp == DVisualLexicon.NODE_BORDER_WIDTH) {
setBorderWidth(((Number) value).floatValue());
} else if (vp == DVisualLexicon.NODE_BORDER_LINE_TYPE) {
final DLineType dLineType = DLineType.getDLineType((LineType) value);
final float currentBorderWidth = graphView.m_nodeDetails.getBorderWidth(model);
setBorder(dLineType.getStroke(currentBorderWidth));
} else if (vp == DVisualLexicon.NODE_TRANSPARENCY) {
setTransparency(((Number) value).intValue());
} else if (vp == BasicVisualLexicon.NODE_WIDTH) {
setWidth(((Number) value).doubleValue());
} else if (vp == BasicVisualLexicon.NODE_HEIGHT) {
setHeight(((Number) value).doubleValue());
} else if (vp == BasicVisualLexicon.NODE_LABEL) {
setText(value.toString());
} else if (vp == BasicVisualLexicon.NODE_LABEL_WIDTH) {
setLabelWidth(((Number) value).doubleValue());
} else if (vp == BasicVisualLexicon.NODE_X_LOCATION) {
setXPosition(((Number) value).doubleValue());
} else if (vp == BasicVisualLexicon.NODE_Y_LOCATION) {
setYPosition(((Number) value).doubleValue());
} else if (vp == BasicVisualLexicon.NODE_Z_LOCATION) {
setZPosition(((Number) value).doubleValue());
} else if (vp == DVisualLexicon.NODE_TOOLTIP) {
setToolTip(value.toString());
} else if (vp == BasicVisualLexicon.NODE_LABEL_COLOR) {
setTextPaint((Color) value);
} else if (vp == BasicVisualLexicon.NODE_LABEL_TRANSPARENCY) {
final int opacity = ((Number) value).intValue();
setLabelTransparency(opacity);
} else if (vp == DVisualLexicon.NODE_LABEL_FONT_FACE) {
final float currentFontSize = graphView.m_nodeDetails.getLabelFont(model, 0).getSize();
final Font newFont = ((Font) value).deriveFont(currentFontSize);
setFont(newFont);
} else if (vp == DVisualLexicon.NODE_LABEL_FONT_SIZE) {
final float newSize = ((Number) value).floatValue();
final Font newFont = graphView.m_nodeDetails.getLabelFont(model, 0).deriveFont(newSize);
setFont(newFont);
} else if (vp == DVisualLexicon.NODE_LABEL_POSITION) {
this.setLabelPosition((ObjectPosition) value);
} else if (vp == BasicVisualLexicon.NODE_NESTED_NETWORK_IMAGE_VISIBLE) {
setNestedNetworkImgVisible(Boolean.TRUE.equals(value));
} else if (vp instanceof CustomGraphicsVisualProperty) {
applyCustomGraphics(vp, (CyCustomGraphics<CustomGraphicLayer>) value);
} else if (vp instanceof ObjectPositionVisualProperty) {
applyCustomGraphicsPosition(vp, (ObjectPosition) value);
}
}