コード例 #1
0
ファイル: VisualStyleMapper.java プロジェクト: tmuetze/cyREST
  @SuppressWarnings({"rawtypes", "unchecked"})
  private final ContinuousMapping parseContinuous(
      String columnName,
      Class<?> type,
      VisualProperty<?> vp,
      VisualMappingFunctionFactory factory,
      JsonNode mappingNode) {

    final ContinuousMapping mapping =
        (ContinuousMapping) factory.createVisualMappingFunction(columnName, type, vp);
    for (JsonNode point : mappingNode.get("points")) {
      JsonNode val = point.get("value");
      JsonNode lesser = point.get("lesser");
      JsonNode equal = point.get("equal");
      JsonNode greater = point.get("greater");

      final BoundaryRangeValues newPoint =
          new BoundaryRangeValues(
              vp.parseSerializableString(lesser.asText()),
              vp.parseSerializableString(equal.asText()),
              vp.parseSerializableString(greater.asText()));
      mapping.addPoint(val.asDouble(), newPoint);
    }

    return mapping;
  }
コード例 #2
0
  private String getSingleVp(
      final String visualProperty,
      final View<? extends CyIdentifiable> view,
      final Collection<VisualProperty<?>> vps) {
    VisualProperty<?> targetVp = null;
    for (final VisualProperty<?> vp : vps) {
      if (vp.getIdString().equals(visualProperty)) {
        targetVp = vp;
        break;
      }
    }
    if (targetVp == null) {
      throw getError(
          "Could not find such Visual Property: " + visualProperty,
          new NotFoundException(),
          Response.Status.NOT_FOUND);
    }

    try {
      return styleSerializer.serializeSingleVisualProp(view, targetVp);
    } catch (IOException e) {
      throw getError(
          "Could not serialize the view object.", e, Response.Status.INTERNAL_SERVER_ERROR);
    }
  }
コード例 #3
0
  private void applyCustomGraphicsPosition(
      final VisualProperty<?> vp, final ObjectPosition position) {
    // No need to modify
    if (position == null) return;

    // Use dependency to retrieve its parent.
    final VisualLexiconNode lexNode = lexicon.getVisualLexiconNode(vp);
    final Collection<VisualLexiconNode> leavs = lexNode.getParent().getChildren();
    VisualProperty<?> parent = null;

    for (VisualLexiconNode vlNode : leavs) {
      if (vlNode.getVisualProperty().getRange().getType().equals(CyCustomGraphics.class)) {
        parent = vlNode.getVisualProperty();
        break;
      }
    }

    if (parent == null)
      throw new NullPointerException(
          "Associated Custom Graphics VP is missing for " + vp.getDisplayName());

    final Set<CustomGraphicLayer> currentCG = cgMap.get(parent);

    if (currentCG == null || currentCG.size() == 0) return;

    final Set<CustomGraphicLayer> newList = new HashSet<CustomGraphicLayer>();

    for (CustomGraphicLayer g : currentCG)
      newList.add(moveCustomGraphicsToNewPosition(g, position));

    currentCG.clear();
    currentCG.addAll(newList);

    this.cgMap.put(parent, currentCG);
  }
コード例 #4
0
ファイル: VisualStyleMapper.java プロジェクト: tmuetze/cyREST
  @SuppressWarnings({"rawtypes", "unchecked"})
  private final void parseDefaults(
      final JsonNode defaults, final VisualStyle style, final VisualLexicon lexicon) {
    for (final JsonNode vpNode : defaults) {
      String vpName = vpNode.get(MAPPING_VP).textValue();
      final VisualProperty vp = getVisualProperty(vpName, lexicon);
      final JsonNode value = vpNode.get("value");
      if (vp == null || value == null) {
        continue;
      }

      Object parsedValue = null;
      if (value.isTextual()) {
        parsedValue = vp.parseSerializableString(value.asText());
      } else {
        parsedValue = vp.parseSerializableString(value.toString());
      }

      style.setDefaultValue(vp, parsedValue);
    }
  }
コード例 #5
0
ファイル: VisualStyleMapper.java プロジェクト: tmuetze/cyREST
  /**
   * Directly update view object.
   *
   * @param view
   * @param rootNode
   * @param lexicon
   */
  public Response updateView(
      final View<? extends CyIdentifiable> view,
      final JsonNode rootNode,
      final VisualLexicon lexicon) {
    for (final JsonNode vpNode : rootNode) {
      String vpName = vpNode.get(MAPPING_VP).textValue();
      final VisualProperty<?> vp = getVisualProperty(vpName, lexicon);
      final JsonNode value = vpNode.get(MAPPING_DISCRETE_VALUE);
      if (vp == null || value == null) {
        continue;
      }

      Object parsedValue = null;
      if (value.isTextual()) {
        parsedValue = vp.parseSerializableString(value.asText());
      } else {
        parsedValue = vp.parseSerializableString(value.toString());
      }

      view.setVisualProperty(vp, parsedValue);
    }
    return Response.ok().build();
  }
コード例 #6
0
  /**
   * Apply bypass
   *
   * @param netView
   * @param graphObjectView
   * @param vp
   */
  private final void applBypassValue(
      final CyNetworkView netView,
      final View<? extends CyIdentifiable> graphObjectView,
      VisualProperty<?> vp) {
    final ValueEditor<Object> editor =
        (ValueEditor<Object>) editorManager.getValueEditor(vp.getRange().getType());
    final Object bypassValue = editor.showEditor(null, graphObjectView.getVisualProperty(vp));

    // Set lock for the vp
    graphObjectView.setLockedValue(vp, bypassValue);

    // Apply the new value only for the given view
    // TODO don't do this, because it overwrites some bypassed values with default ones!!! Calling
    // setLockedValue should be enough
    //		final CyRow row = netView.getModel().getRow(graphObjectView.getModel());
    //		vmm.getCurrentVisualStyle().apply(row, graphObjectView);

    // Redraw the view
    netView.updateView();
  }
コード例 #7
0
ファイル: VisualStyleMapper.java プロジェクト: tmuetze/cyREST
  @SuppressWarnings({"rawtypes", "unchecked"})
  private final DiscreteMapping parseDiscrete(
      String columnName,
      Class<?> type,
      VisualProperty<?> vp,
      VisualMappingFunctionFactory factory,
      JsonNode discreteMapping) {
    DiscreteMapping mapping =
        (DiscreteMapping) factory.createVisualMappingFunction(columnName, type, vp);

    final Map map = new HashMap();
    for (JsonNode pair : discreteMapping) {
      final Object key = parseKeyValue(type, pair.get(MAPPING_DISCRETE_KEY).textValue());
      if (key != null) {
        map.put(key, vp.parseSerializableString(pair.get(MAPPING_DISCRETE_VALUE).textValue()));
      }
    }
    mapping.putAll(map);
    return mapping;
  }
コード例 #8
0
  @Override
  @SuppressWarnings({"unchecked", "rawtypes"})
  public void clearValueLock(final VisualProperty<?> vp) {
    final boolean isDefault;
    synchronized (graphView.m_lock) {
      isDefault = !visualProperties.containsKey(vp);
    }
    super.clearValueLock(vp);

    // Reset to the visual style default if visualProperties map doesn't contain this vp
    if (isDefault) {
      if (vp
          == BasicVisualLexicon
              .NODE_VISIBLE) // TODO: what if the default value of the visual style is different
                             // (e.g. invisible)?
      applyVisualProperty((VisualProperty) vp, vp.getDefault());
      else
        graphView.nodeViewDefaultSupport.setViewDefault(
            (VisualProperty) vp, graphView.m_nodeDetails.getDefaultValue(vp));
    }
  }
コード例 #9
0
  /**
   * @param netView
   * @param view a View&lt;CyNode&gt;, View&lt;CyEdge&gt; or View&lt;CyNetwork&gt; object
   * @return
   */
  public CyMenuItem build(final CyNetworkView netView, final View<? extends CyIdentifiable> view) {
    final Class<? extends CyIdentifiable> targetClass = view.getModel().getClass();
    final Queue<VisualLexiconNode> queue =
        new PriorityQueue<VisualLexiconNode>(50, new VisualLexiconNodeComparator());
    final Map<VisualLexiconNode, JMenuItem> menuMap = new HashMap<VisualLexiconNode, JMenuItem>();

    final JMenu rootJMenu = new JMenu(ROOT_MENU_LABEL);

    final CyMenuItem rootMenu = new CyMenuItem(rootJMenu, ROOT_GRAVITY);
    queue.addAll(root.getChildren());
    menuMap.put(root, rootMenu.getMenuItem());

    // Node size, width and height
    JMenuItem menuItemNodeSize = null;
    JMenuItem menuItemNodeWidth = null;
    JMenuItem menuItemNodeHeight = null;

    final Set<VisualLexiconNode> nextNodes = new HashSet<VisualLexiconNode>();

    while (!queue.isEmpty()) {
      final VisualLexiconNode curretNode = queue.poll();
      final VisualProperty<?> vp = curretNode.getVisualProperty();

      if (vp.getTargetDataType().isAssignableFrom(targetClass)) {
        final Collection<VisualLexiconNode> children = curretNode.getChildren();
        nextNodes.addAll(children);

        final JMenuItem menu;
        if (children.isEmpty() && PropertySheetUtil.isCompatible(vp)) {
          final boolean lock = view.isDirectlyLocked(vp);
          if (lock) {
            menu = new JMenu(vp.getDisplayName());
            final JMenuItem clear = new JMenuItem("Clear");
            clear.addActionListener(
                new ActionListener() {
                  @Override
                  public void actionPerformed(ActionEvent e) {
                    view.clearValueLock(vp);
                    netView.updateView();
                  }
                });

            final JMenuItem edit = new JMenuItem("Edit Bypass");
            edit.addActionListener(
                new ActionListener() {
                  @Override
                  public void actionPerformed(ActionEvent e) {
                    applBypassValue(netView, view, vp);
                  }
                });
            menu.add(clear);
            menu.add(edit);

            // Update color
            menu.setForeground(ENABLED_COLOR);
            menu.setIcon(ENABLED_ICON);
            menu.setFont(ENABLED_FONT);
            VisualLexiconNode parent = curretNode.getParent();

            while (parent != root) {
              JMenuItem enabledPath = menuMap.get(parent);
              enabledPath.setForeground(ENABLED_COLOR);
              enabledPath.setIcon(ENABLED_ICON);
              enabledPath.setFont(ENABLED_FONT);
              parent = parent.getParent();
            }

            rootJMenu.setIcon(ENABLED_ICON);
            rootJMenu.setForeground(ENABLED_COLOR);
            rootJMenu.setFont(ENABLED_FONT);

            vpSet.add(vp);
          } else {
            menu = new JMenuItem(vp.getDisplayName());
            menu.addActionListener(
                new ActionListener() {
                  @Override
                  public void actionPerformed(ActionEvent e) {
                    applBypassValue(netView, view, vp);
                  }
                });

            if (vp.getDisplayName()
                .equalsIgnoreCase(BasicVisualLexicon.NODE_WIDTH.getDisplayName())) {
              menuItemNodeWidth = menu;
            }
            if (vp.getDisplayName()
                .equalsIgnoreCase(BasicVisualLexicon.NODE_HEIGHT.getDisplayName())) {
              menuItemNodeHeight = menu;
            }
          }
        } else {

          menu = new JMenu(vp.getDisplayName());

          if (vp.getDisplayName().equalsIgnoreCase(BasicVisualLexicon.NODE_SIZE.getDisplayName())) {
            menuItemNodeSize = menu;
            vp_nodeSize = vp;
          }
        }

        if (PropertySheetUtil.isCompatible(vp)) {
          menuMap.get(curretNode.getParent()).add(menu);
          menuMap.put(curretNode, menu);
        }
      }

      if (queue.isEmpty()) {
        queue.addAll(nextNodes);
        nextNodes.clear();
      }
    }

    // handle node size
    if (menuItemNodeSize != null) {
      //
      JMenuItem menuItemNodeSize1 = new JMenuItem(vp_nodeSize.getDisplayName());
      menuItemNodeSize1.addActionListener(
          new ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
              applBypassValue(netView, view, vp_nodeSize);
            }
          });

      menuItemNodeSize.add(menuItemNodeSize1);

      // Check if nose size is locked
      boolean nodeSizeIsLocked = false;
      java.util.Iterator it =
          vmm.getCurrentVisualStyle().getAllVisualPropertyDependencies().iterator();
      while (it.hasNext()) {
        org.cytoscape.view.vizmap.VisualPropertyDependency dep =
            (org.cytoscape.view.vizmap.VisualPropertyDependency) it.next();

        if (dep.getDisplayName().equalsIgnoreCase("Lock node width and height")
            && dep.isDependencyEnabled()) {
          nodeSizeIsLocked = true;
        }
      }

      if (nodeSizeIsLocked) {
        // In case the Node size is locked, disable menuItem Node_width and Nod_height
        if (menuItemNodeWidth != null) menuItemNodeWidth.setEnabled(false);
        if (menuItemNodeHeight != null) menuItemNodeHeight.setEnabled(false);
      } else {
        // In case the Node size is not locked, disable menuItem Node_size
        if (menuItemNodeSize1 != null) menuItemNodeSize1.setEnabled(false);
      }
    }

    final JSeparator separator = new JSeparator();
    final JMenuItem resetMenu = new JMenuItem("Reset All");
    resetMenu.addActionListener(
        new ActionListener() {

          @Override
          public void actionPerformed(ActionEvent e) {
            clearAll(netView, view);
          }
        });

    rootJMenu.add(separator);
    rootJMenu.add(resetMenu);

    return rootMenu;
  }
  /** Edit all selected cells at once. This is for Discrete Mapping only. */
  @Override
  @SuppressWarnings({"rawtypes", "unchecked"})
  public void actionPerformed(final ActionEvent e) {
    final VizMapperMainPanel vizMapperMainPanel = getVizMapperMainPanel();

    if (vizMapperMainPanel == null) return;

    final VisualPropertySheet vpSheet = vizMapperMainPanel.getSelectedVisualPropertySheet();

    if (vpSheet == null) return;

    for (final VisualPropertySheetItem<?> vpSheetItem : vpSheet.getSelectedItems()) {
      final VisualPropertySheetItemModel<?> model = vpSheetItem.getModel();
      final PropertySheetTable table = vpSheetItem.getPropSheetPnl().getTable();
      final int[] selected = table.getSelectedRows();

      if (selected == null
          || selected.length == 0
          || !(model.getVisualMappingFunction() instanceof DiscreteMapping)) continue;

      // Test with the first selected item
      final DiscreteMapping dm = (DiscreteMapping) model.getVisualMappingFunction();
      final VisualProperty vp = dm.getVisualProperty();

      Object newValue = null;

      try {
        // Get new value
        newValue =
            editorManager.showVisualPropertyValueEditor(vizMapperMainPanel, vp, vp.getDefault());
      } catch (Exception ex) {
        logger.error("Could not edit value.", ex);
      }

      if (newValue == null) continue;

      final Map<Object, Object> newValues = new HashMap<Object, Object>();
      final Map<Object, Object> previousValues = new HashMap<Object, Object>();

      for (int i = 0; i < selected.length; i++) {
        final Item item = ((Item) table.getValueAt(selected[i], 0));

        if (item != null && item.getProperty() instanceof VizMapperProperty) {
          final VizMapperProperty<?, ?, ?> prop = (VizMapperProperty<?, ?, ?>) item.getProperty();

          if (prop.getCellType() == CellType.DISCRETE) {
            // Save the current value for undo
            previousValues.put(prop.getKey(), prop.getValue());

            // New value
            newValues.put(prop.getKey(), newValue);
          }
        }
      }

      // Save the mapping->old_values for undo
      if (!previousValues.isEmpty()) previousMappingValues.put(dm, previousValues);

      // Save the mapping->new_values for redo
      if (!newValues.isEmpty()) newMappingValues.put(dm, newValues);

      // Update the visual mapping
      dm.putAll(newValues);
    }

    // Undo support
    if (!previousMappingValues.isEmpty()) {
      final UndoSupport undo = servicesUtil.get(UndoSupport.class);
      undo.postEdit(new EditSelectedDiscreteValuesEdit());
    }
  }
コード例 #11
0
  @Override
  @SuppressWarnings("unchecked")
  protected <T, V extends T> void applyVisualProperty(
      final VisualProperty<? extends T> vpOriginal, V value) {
    VisualProperty<?> vp = vpOriginal;

    // Check to make sure our view hasn't gotten disconnected somewhere along the line
    if (graphView.getNodeView(this.getModel()) == null) return;

    // Null means set value to VP's default.
    if (value == null) value = (V) vp.getDefault();

    if (vp == DVisualLexicon.NODE_SHAPE) {
      setShape(((NodeShape) value));
    } else if (vp == DVisualLexicon.NODE_SELECTED_PAINT) {
      setSelectedPaint((Paint) value);
    } else if (vp == BasicVisualLexicon.NODE_SELECTED) {
      setSelected((Boolean) value);
    } else if (vp == BasicVisualLexicon.NODE_VISIBLE) {
      if (((Boolean) value).booleanValue()) {
        graphView.showGraphObject(this);
        isVisible = true;
      } else {
        graphView.hideGraphObject(this);
        isVisible = false;
      }
    } else if (vp == BasicVisualLexicon.NODE_FILL_COLOR) {
      setUnselectedPaint((Paint) value);
    } else if (vp == DVisualLexicon.NODE_BORDER_PAINT) {
      setBorderPaint((Color) value);
    } else if (vp == DVisualLexicon.NODE_BORDER_TRANSPARENCY) {
      final Integer opacity = ((Number) value).intValue();
      setBorderTransparency(opacity);
    } else if (vp == DVisualLexicon.NODE_BORDER_WIDTH) {
      setBorderWidth(((Number) value).floatValue());
    } else if (vp == DVisualLexicon.NODE_BORDER_LINE_TYPE) {
      final DLineType dLineType = DLineType.getDLineType((LineType) value);
      final float currentBorderWidth = graphView.m_nodeDetails.getBorderWidth(model);
      setBorder(dLineType.getStroke(currentBorderWidth));
    } else if (vp == DVisualLexicon.NODE_TRANSPARENCY) {
      setTransparency(((Number) value).intValue());
    } else if (vp == BasicVisualLexicon.NODE_WIDTH) {
      setWidth(((Number) value).doubleValue());
    } else if (vp == BasicVisualLexicon.NODE_HEIGHT) {
      setHeight(((Number) value).doubleValue());
    } else if (vp == BasicVisualLexicon.NODE_LABEL) {
      setText(value.toString());
    } else if (vp == BasicVisualLexicon.NODE_LABEL_WIDTH) {
      setLabelWidth(((Number) value).doubleValue());
    } else if (vp == BasicVisualLexicon.NODE_X_LOCATION) {
      setXPosition(((Number) value).doubleValue());
    } else if (vp == BasicVisualLexicon.NODE_Y_LOCATION) {
      setYPosition(((Number) value).doubleValue());
    } else if (vp == BasicVisualLexicon.NODE_Z_LOCATION) {
      setZPosition(((Number) value).doubleValue());
    } else if (vp == DVisualLexicon.NODE_TOOLTIP) {
      setToolTip(value.toString());
    } else if (vp == BasicVisualLexicon.NODE_LABEL_COLOR) {
      setTextPaint((Color) value);
    } else if (vp == BasicVisualLexicon.NODE_LABEL_TRANSPARENCY) {
      final int opacity = ((Number) value).intValue();
      setLabelTransparency(opacity);
    } else if (vp == DVisualLexicon.NODE_LABEL_FONT_FACE) {
      final float currentFontSize = graphView.m_nodeDetails.getLabelFont(model, 0).getSize();
      final Font newFont = ((Font) value).deriveFont(currentFontSize);
      setFont(newFont);
    } else if (vp == DVisualLexicon.NODE_LABEL_FONT_SIZE) {
      final float newSize = ((Number) value).floatValue();
      final Font newFont = graphView.m_nodeDetails.getLabelFont(model, 0).deriveFont(newSize);
      setFont(newFont);
    } else if (vp == DVisualLexicon.NODE_LABEL_POSITION) {
      this.setLabelPosition((ObjectPosition) value);
    } else if (vp == BasicVisualLexicon.NODE_NESTED_NETWORK_IMAGE_VISIBLE) {
      setNestedNetworkImgVisible(Boolean.TRUE.equals(value));
    } else if (vp instanceof CustomGraphicsVisualProperty) {
      applyCustomGraphics(vp, (CyCustomGraphics<CustomGraphicLayer>) value);
    } else if (vp instanceof ObjectPositionVisualProperty) {
      applyCustomGraphicsPosition(vp, (ObjectPosition) value);
    }
  }