@Override protected void processRequest() throws Exception { FormProcessor fp = new FormProcessor(request); DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource()); int noteId = fp.getInt(NOTE_ID, true); DiscrepancyNoteBean note = (DiscrepancyNoteBean) dndao.findByPK(noteId); String entityType = note.getEntityType(); UserAccountDAO udao = new UserAccountDAO(sm.getDataSource()); ArrayList notes = dndao.findAllEntityByPK(note.getEntityType(), noteId); Date lastUpdatedDate = note.getCreatedDate(); UserAccountBean lastUpdator = (UserAccountBean) udao.findByPK(note.getOwnerId()); for (int i = 0; i < notes.size(); i++) { DiscrepancyNoteBean n = (DiscrepancyNoteBean) notes.get(i); int pId = n.getParentDnId(); if (pId == 0) { note = n; note.setLastUpdator((UserAccountBean) udao.findByPK(n.getOwnerId())); note.setLastDateUpdated(n.getCreatedDate()); lastUpdatedDate = note.getLastDateUpdated(); lastUpdator = note.getLastUpdator(); } } for (int i = 0; i < notes.size(); i++) { DiscrepancyNoteBean n = (DiscrepancyNoteBean) notes.get(i); int pId = n.getParentDnId(); if (pId > 0) { note.getChildren().add(n); if (!n.getCreatedDate().before(lastUpdatedDate)) { lastUpdatedDate = n.getCreatedDate(); lastUpdator = (UserAccountBean) udao.findByPK(n.getOwnerId()); note.setLastUpdator(lastUpdator); note.setLastDateUpdated(lastUpdatedDate); note.setResolutionStatusId(n.getResolutionStatusId()); note.setResStatus(ResolutionStatus.get(n.getResolutionStatusId())); } } } note.setNumChildren(note.getChildren().size()); note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId())); logger.info("Just set Note: " + note.getCrfName() + " column " + note.getColumn()); request.setAttribute(DIS_NOTE, note); forwardPage(Page.VIEW_SINGLE_NOTE); }
/** * Determines if a discrepancy note is closed or not. The note is closed if it has status closed, * or any of its children have closed status. * * @param note The discrepancy note. The children should already be set. * @return <code>true</code> if the note is closed, <code>false</code> otherwise. */ public static boolean noteIsClosed(DiscrepancyNoteBean note) { if (note.getResolutionStatusId() == ResolutionStatus.CLOSED.getId()) { return true; } ArrayList children = note.getChildren(); for (int i = 0; i < children.size(); i++) { DiscrepancyNoteBean child = (DiscrepancyNoteBean) children.get(i); if (child.getResolutionStatusId() == ResolutionStatus.CLOSED.getId()) { return true; } } return false; }
/** Updates a Study event */ public EntityBean update(EntityBean eb) { // update discrepancy_note set // description =?, // discrepancy_note_type_id =? , // resolution_status_id =? , // detailed_notes =? // where discrepancy_note_id=? DiscrepancyNoteBean dnb = (DiscrepancyNoteBean) eb; dnb.setActive(false); HashMap variables = new HashMap(); variables.put(new Integer(1), dnb.getDescription()); variables.put(new Integer(2), new Integer(dnb.getDiscrepancyNoteTypeId())); variables.put(new Integer(3), new Integer(dnb.getResolutionStatusId())); variables.put(new Integer(4), dnb.getDetailedNotes()); variables.put(new Integer(5), new Integer(dnb.getId())); this.execute(digester.getQuery("update"), variables); if (isQuerySuccessful()) { dnb.setActive(true); } return dnb; }
/** Creates a new discrepancy note */ public EntityBean create(EntityBean eb) { DiscrepancyNoteBean sb = (DiscrepancyNoteBean) eb; HashMap variables = new HashMap(); HashMap nullVars = new HashMap(); // INSERT INTO discrepancy_note // (description, discrepancy_note_type_id , // resolution_status_id , detailed_notes , date_created, // owner_id, parent_dn_id) // VALUES (?,?,?,?,now(),?,?) variables.put(new Integer(1), sb.getDescription()); variables.put(new Integer(2), new Integer(sb.getDiscrepancyNoteTypeId())); variables.put(new Integer(3), new Integer(sb.getResolutionStatusId())); variables.put(new Integer(4), sb.getDetailedNotes()); variables.put(new Integer(5), new Integer(sb.getOwner().getId())); if (sb.getParentDnId() == 0) { nullVars.put(new Integer(6), new Integer(Types.INTEGER)); variables.put(new Integer(6), null); } else { variables.put(new Integer(6), new Integer(sb.getParentDnId())); } variables.put(new Integer(7), sb.getEntityType()); variables.put(new Integer(8), new Integer(sb.getStudyId())); this.executeWithPK(digester.getQuery("create"), variables, nullVars); if (isQuerySuccessful()) { sb.setId(getLatestPK()); } return sb; }
/** getEntityFromHashMap, the method that gets the object from the database query. */ public Object getEntityFromHashMap(HashMap hm) { DiscrepancyNoteBean eb = new DiscrepancyNoteBean(); Date dateCreated = (Date) hm.get("date_created"); Integer ownerId = (Integer) hm.get("owner_id"); eb.setCreatedDate(dateCreated); eb.setOwnerId(ownerId.intValue()); // discrepancy_note_id serial NOT NULL, // description varchar(255), // discrepancy_note_type_id numeric, // resolution_status_id numeric, // detailed_notes varchar(1000), // date_created date, // owner_id numeric, // parent_dn_id numeric, eb.setId(selectInt(hm, "discrepancy_note_id")); eb.setDescription((String) hm.get("description")); eb.setDiscrepancyNoteTypeId(((Integer) hm.get("discrepancy_note_type_id")).intValue()); eb.setResolutionStatusId(((Integer) hm.get("resolution_status_id")).intValue()); eb.setParentDnId(((Integer) hm.get("parent_dn_id")).intValue()); eb.setDetailedNotes((String) hm.get("detailed_notes")); eb.setEntityType((String) hm.get("entity_type")); eb.setDisType(DiscrepancyNoteType.get(eb.getDiscrepancyNoteTypeId())); eb.setResStatus(ResolutionStatus.get(eb.getResolutionStatusId())); eb.setStudyId(selectInt(hm, "study_id")); return eb; }
@Override public void processRequest() throws Exception { FormProcessor fp = new FormProcessor(request); int studySubId = fp.getInt(STUDY_SUB_ID, true); int eventCRFId = fp.getInt(EVENT_CRF_ID); String action = request.getParameter("action"); StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource()); StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource()); EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource()); StudyDAO sdao = new StudyDAO(sm.getDataSource()); if (eventCRFId == 0) { addPageMessage(respage.getString("please_choose_an_event_CRF_to_delete")); request.setAttribute("id", new Integer(studySubId).toString()); forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET); } else { EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId); StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId); request.setAttribute("studySub", studySub); // construct info needed on view event crf page CRFDAO cdao = new CRFDAO(sm.getDataSource()); CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource()); int crfVersionId = eventCRF.getCRFVersionId(); CRFBean cb = cdao.findByVersionId(crfVersionId); eventCRF.setCrf(cb); CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId); eventCRF.setCrfVersion(cvb); // then get the definition so we can call // DisplayEventCRFBean.setFlags int studyEventId = eventCRF.getStudyEventId(); StudyEventBean event = (StudyEventBean) sedao.findByPK(studyEventId); int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId); StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource()); StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId); event.setStudyEventDefinition(sed); request.setAttribute("event", event); EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource()); StudyBean study = (StudyBean) sdao.findByPK(studySub.getStudyId()); EventDefinitionCRFBean edc = edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId()); DisplayEventCRFBean dec = new DisplayEventCRFBean(); dec.setEventCRF(eventCRF); dec.setFlags(eventCRF, ub, currentRole, edc.isDoubleEntry()); // find all item data ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource()); dnDao = new DiscrepancyNoteDAO(sm.getDataSource()); ArrayList<ItemDataBean> itemData = iddao.findAllByEventCRFId(eventCRF.getId()); request.setAttribute("items", itemData); if ("confirm".equalsIgnoreCase(action)) { request.setAttribute("displayEventCRF", dec); forwardPage(Page.DELETE_EVENT_CRF); } else { logger.info("submit to delete the event CRF from event"); // OC-6303 Deleting Event CRF resets Show / Hide logic // delete records from DynamicItemForm and DynamicItemGroup getDynamicsItemFormMetadataDao().delete(eventCRFId); getDynamicsItemGroupMetadataDao().delete(eventCRFId); eventCRF.setOldStatus(eventCRF.getStatus()); eventCRF.setStatus(Status.RESET); eventCRF.setUpdater(ub); ecdao.update(eventCRF); for (ItemDataBean itemdata : itemData) { // OC-6343 Rule behaviour must be reset if an Event CRF is deleted // delete the records from ruleActionRunLogDao getRuleActionRunLogDao().delete(itemdata.getId()); // OC-6344 Notes & Discrepancies must be set to "closed" when event CRF is deleted // parentDiscrepancyNoteList is the list of the parent DNs records only ArrayList<DiscrepancyNoteBean> parentDiscrepancyNoteList = getDnDao().findParentNotesOnlyByItemData(itemdata.getId()); for (DiscrepancyNoteBean parentDiscrepancyNote : parentDiscrepancyNoteList) { if (parentDiscrepancyNote.getResolutionStatusId() != 4) { // if the DN's resolution status is not set to Closed String description = resword.getString("dn_auto-closed_description"); String detailedNotes = resword.getString("dn_auto_closed_detailed_notes"); // create new DN record , new DN Map record , also update the parent record createDiscrepancyNoteBean( description, detailedNotes, itemdata.getId(), study, ub, parentDiscrepancyNote); } } iddao = new ItemDataDAO(sm.getDataSource()); ifmdao = new ItemFormMetadataDAO(sm.getDataSource()); ItemDataBean idBean = (ItemDataBean) iddao.findByPK(itemdata.getId()); ItemFormMetadataBean ifmBean = ifmdao.findByItemIdAndCRFVersionId(idBean.getItemId(), crfVersionId); // Updating Dn_item_data_map actovated column into false for the existing DNs ArrayList<DiscrepancyNoteBean> dnBeans = getDnDao().findExistingNotesForItemData(itemdata.getId()); if (dnBeans.size() != 0) { DiscrepancyNoteBean dnBean = new DiscrepancyNoteBean(); dnBean.setEntityId(itemdata.getId()); dnBean.setActivated(false); getDnDao().updateDnMapActivation(dnBean); } // Default Values are not addressed itemdata.setValue(""); itemdata.setOldStatus(itemdata.getStatus()); itemdata.setOwner(ub); itemdata.setStatus(Status.AVAILABLE); itemdata.setUpdater(ub); iddao.updateUser(itemdata); iddao.update(itemdata); } // OC-6291 event_crf status change eventCRF.setOldStatus(eventCRF.getStatus()); eventCRF.setStatus(Status.AVAILABLE); eventCRF.setUpdater(ub); ecdao.update(eventCRF); if (event.getSubjectEventStatus().isCompleted() || event.getSubjectEventStatus().isSigned()) { event.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED); event.setUpdater(ub); sedao = new StudyEventDAO(sm.getDataSource()); sedao.update(event); } String emailBody = respage.getString("the_event_CRF") + cb.getName() + respage.getString("has_been_deleted_from_the_event") + event.getStudyEventDefinition().getName() + ". " + respage.getString("has_been_deleted_from_the_event_cont"); addPageMessage(emailBody); // sendEmail(emailBody); request.setAttribute("id", new Integer(studySubId).toString()); forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET); } } }
public static boolean parentNoteIsClosed(DiscrepancyNoteBean parentNote) { if (parentNote.getResolutionStatusId() == ResolutionStatus.CLOSED.getId()) { return true; } return false; }
/* * (non-Javadoc) * * @see org.akaza.openclinica.control.core.SecureController#processRequest() */ @Override protected void processRequest() throws Exception { FormProcessor fp = new FormProcessor(request); int noteId = fp.getInt(INPUT_NOTE_ID); String module = (String) session.getAttribute("module"); // Integer subjectId = (Integer) session.getAttribute("subjectId"); StudySubjectDAO studySubjectDAO = new StudySubjectDAO(sm.getDataSource()); DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource()); dndao.setFetchMapping(true); // check that the note exists DiscrepancyNoteBean discrepancyNoteBean = (DiscrepancyNoteBean) dndao.findByPK(noteId); if (!discrepancyNoteBean.isActive()) { throw new InconsistentStateException( Page.MANAGE_STUDY_SERVLET, resexception.getString("you_are_trying_resolve_discrepancy_not_exist")); } // check that the note has not already been closed ArrayList children = dndao.findAllByParent(discrepancyNoteBean); discrepancyNoteBean.setChildren(children); // This logic has been reverted, issue-7459 // if (parentNoteIsClosed(discrepancyNoteBean)) { // throw new InconsistentStateException(Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET, // respage // .getString("the_discrepancy_choose_has_been_closed_resolved_create_new")); // } // all clear, send the user to the resolved screen String entityType = discrepancyNoteBean.getEntityType().toLowerCase(); discrepancyNoteBean.setResStatus( ResolutionStatus.get(discrepancyNoteBean.getResolutionStatusId())); discrepancyNoteBean.setDisType( DiscrepancyNoteType.get(discrepancyNoteBean.getDiscrepancyNoteTypeId())); // BWP 03/17/2009 3166: if it's not an ItemData type note, redirect // Monitors to View Subject or // View Study Events << if (currentRole.getRole().equals(Role.MONITOR) && !"itemdata".equalsIgnoreCase(entityType) && !"eventcrf".equalsIgnoreCase(entityType)) { redirectMonitor(module, discrepancyNoteBean); return; } // >> // If Study is Frozen or Locked if (currentStudy.getStatus().isFrozen() && !"itemdata".equalsIgnoreCase(entityType) && !"eventcrf".equalsIgnoreCase(entityType)) { redirectMonitor(module, discrepancyNoteBean); return; } boolean toView = false; boolean isCompleted = false; if ("itemdata".equalsIgnoreCase(entityType)) { ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource()); ItemDataBean idb = (ItemDataBean) iddao.findByPK(discrepancyNoteBean.getEntityId()); EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource()); EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId()); StudySubjectBean studySubjectBean = (StudySubjectBean) studySubjectDAO.findByPK(ecb.getStudySubjectId()); discrepancyNoteBean.setSubjectId(studySubjectBean.getId()); discrepancyNoteBean.setItemId(idb.getItemId()); if (ecb.getStatus().equals(Status.UNAVAILABLE)) { isCompleted = true; } toView = true; // we want to go to view note page if the note is // for item data } // logger.info("set up pop up url: " + createNoteURL); // System.out.println("set up pop up url: " + createNoteURL); boolean goNext = prepareRequestForResolution( request, sm.getDataSource(), currentStudy, discrepancyNoteBean, isCompleted); Page p = getPageForForwarding(discrepancyNoteBean, isCompleted); // logger.info("found page for forwarding: " + p.getFileName()); if (p == null) { throw new InconsistentStateException( Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET, resexception.getString("the_discrepancy_note_triying_resolve_has_invalid_type")); } else { if (p.getFileName().contains("?")) { if (!p.getFileName().contains("fromViewNotes=1")) { p.setFileName(p.getFileName() + "&fromViewNotes=1"); } } else { p.setFileName(p.getFileName() + "?fromViewNotes=1"); } String createNoteURL = CreateDiscrepancyNoteServlet.getAddChildURL( discrepancyNoteBean, ResolutionStatus.CLOSED, true); setPopUpURL(createNoteURL); } if (!goNext) { setPopUpURL(""); addPageMessage( respage.getString("you_may_not_perform_admin_edit_on_CRF_not_completed_by_user")); p = Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET; } forwardPage(p); }