@Override
protected void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
int noteId = fp.getInt(NOTE_ID, true);
DiscrepancyNoteBean note = (DiscrepancyNoteBean) dndao.findByPK(noteId);
String entityType = note.getEntityType();
UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
ArrayList notes = dndao.findAllEntityByPK(note.getEntityType(), noteId);
Date lastUpdatedDate = note.getCreatedDate();
UserAccountBean lastUpdator = (UserAccountBean) udao.findByPK(note.getOwnerId());
for (int i = 0; i < notes.size(); i++) {
DiscrepancyNoteBean n = (DiscrepancyNoteBean) notes.get(i);
int pId = n.getParentDnId();
if (pId == 0) {
note = n;
note.setLastUpdator((UserAccountBean) udao.findByPK(n.getOwnerId()));
note.setLastDateUpdated(n.getCreatedDate());
lastUpdatedDate = note.getLastDateUpdated();
lastUpdator = note.getLastUpdator();
}
}
for (int i = 0; i < notes.size(); i++) {
DiscrepancyNoteBean n = (DiscrepancyNoteBean) notes.get(i);
int pId = n.getParentDnId();
if (pId > 0) {
note.getChildren().add(n);
if (!n.getCreatedDate().before(lastUpdatedDate)) {
lastUpdatedDate = n.getCreatedDate();
lastUpdator = (UserAccountBean) udao.findByPK(n.getOwnerId());
note.setLastUpdator(lastUpdator);
note.setLastDateUpdated(lastUpdatedDate);
note.setResolutionStatusId(n.getResolutionStatusId());
note.setResStatus(ResolutionStatus.get(n.getResolutionStatusId()));
}
}
}
note.setNumChildren(note.getChildren().size());
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
logger.info("Just set Note: " + note.getCrfName() + " column " + note.getColumn());
request.setAttribute(DIS_NOTE, note);
forwardPage(Page.VIEW_SINGLE_NOTE);
}
/**
* Determines if a discrepancy note is closed or not. The note is closed if it has status closed,
* or any of its children have closed status.
*
* @param note The discrepancy note. The children should already be set.
* @return <code>true</code> if the note is closed, <code>false</code> otherwise.
*/
public static boolean noteIsClosed(DiscrepancyNoteBean note) {
if (note.getResolutionStatusId() == ResolutionStatus.CLOSED.getId()) {
return true;
}
ArrayList children = note.getChildren();
for (int i = 0; i < children.size(); i++) {
DiscrepancyNoteBean child = (DiscrepancyNoteBean) children.get(i);
if (child.getResolutionStatusId() == ResolutionStatus.CLOSED.getId()) {
return true;
}
}
return false;
}
/** Updates a Study event */
public EntityBean update(EntityBean eb) {
// update discrepancy_note set
// description =?,
// discrepancy_note_type_id =? ,
// resolution_status_id =? ,
// detailed_notes =?
// where discrepancy_note_id=?
DiscrepancyNoteBean dnb = (DiscrepancyNoteBean) eb;
dnb.setActive(false);
HashMap variables = new HashMap();
variables.put(new Integer(1), dnb.getDescription());
variables.put(new Integer(2), new Integer(dnb.getDiscrepancyNoteTypeId()));
variables.put(new Integer(3), new Integer(dnb.getResolutionStatusId()));
variables.put(new Integer(4), dnb.getDetailedNotes());
variables.put(new Integer(5), new Integer(dnb.getId()));
this.execute(digester.getQuery("update"), variables);
if (isQuerySuccessful()) {
dnb.setActive(true);
}
return dnb;
}
/** Creates a new discrepancy note */
public EntityBean create(EntityBean eb) {
DiscrepancyNoteBean sb = (DiscrepancyNoteBean) eb;
HashMap variables = new HashMap();
HashMap nullVars = new HashMap();
// INSERT INTO discrepancy_note
// (description, discrepancy_note_type_id ,
// resolution_status_id , detailed_notes , date_created,
// owner_id, parent_dn_id)
// VALUES (?,?,?,?,now(),?,?)
variables.put(new Integer(1), sb.getDescription());
variables.put(new Integer(2), new Integer(sb.getDiscrepancyNoteTypeId()));
variables.put(new Integer(3), new Integer(sb.getResolutionStatusId()));
variables.put(new Integer(4), sb.getDetailedNotes());
variables.put(new Integer(5), new Integer(sb.getOwner().getId()));
if (sb.getParentDnId() == 0) {
nullVars.put(new Integer(6), new Integer(Types.INTEGER));
variables.put(new Integer(6), null);
} else {
variables.put(new Integer(6), new Integer(sb.getParentDnId()));
}
variables.put(new Integer(7), sb.getEntityType());
variables.put(new Integer(8), new Integer(sb.getStudyId()));
this.executeWithPK(digester.getQuery("create"), variables, nullVars);
if (isQuerySuccessful()) {
sb.setId(getLatestPK());
}
return sb;
}
/** getEntityFromHashMap, the method that gets the object from the database query. */
public Object getEntityFromHashMap(HashMap hm) {
DiscrepancyNoteBean eb = new DiscrepancyNoteBean();
Date dateCreated = (Date) hm.get("date_created");
Integer ownerId = (Integer) hm.get("owner_id");
eb.setCreatedDate(dateCreated);
eb.setOwnerId(ownerId.intValue());
// discrepancy_note_id serial NOT NULL,
// description varchar(255),
// discrepancy_note_type_id numeric,
// resolution_status_id numeric,
// detailed_notes varchar(1000),
// date_created date,
// owner_id numeric,
// parent_dn_id numeric,
eb.setId(selectInt(hm, "discrepancy_note_id"));
eb.setDescription((String) hm.get("description"));
eb.setDiscrepancyNoteTypeId(((Integer) hm.get("discrepancy_note_type_id")).intValue());
eb.setResolutionStatusId(((Integer) hm.get("resolution_status_id")).intValue());
eb.setParentDnId(((Integer) hm.get("parent_dn_id")).intValue());
eb.setDetailedNotes((String) hm.get("detailed_notes"));
eb.setEntityType((String) hm.get("entity_type"));
eb.setDisType(DiscrepancyNoteType.get(eb.getDiscrepancyNoteTypeId()));
eb.setResStatus(ResolutionStatus.get(eb.getResolutionStatusId()));
eb.setStudyId(selectInt(hm, "study_id"));
return eb;
}
@Override
public void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int studySubId = fp.getInt(STUDY_SUB_ID, true);
int eventCRFId = fp.getInt(EVENT_CRF_ID);
String action = request.getParameter("action");
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyDAO sdao = new StudyDAO(sm.getDataSource());
if (eventCRFId == 0) {
addPageMessage(respage.getString("please_choose_an_event_CRF_to_delete"));
request.setAttribute("id", new Integer(studySubId).toString());
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
} else {
EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId);
StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
request.setAttribute("studySub", studySub);
// construct info needed on view event crf page
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
int crfVersionId = eventCRF.getCRFVersionId();
CRFBean cb = cdao.findByVersionId(crfVersionId);
eventCRF.setCrf(cb);
CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
eventCRF.setCrfVersion(cvb);
// then get the definition so we can call
// DisplayEventCRFBean.setFlags
int studyEventId = eventCRF.getStudyEventId();
StudyEventBean event = (StudyEventBean) sedao.findByPK(studyEventId);
int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyEventDefinitionBean sed =
(StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId);
event.setStudyEventDefinition(sed);
request.setAttribute("event", event);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
StudyBean study = (StudyBean) sdao.findByPK(studySub.getStudyId());
EventDefinitionCRFBean edc =
edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId());
DisplayEventCRFBean dec = new DisplayEventCRFBean();
dec.setEventCRF(eventCRF);
dec.setFlags(eventCRF, ub, currentRole, edc.isDoubleEntry());
// find all item data
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
dnDao = new DiscrepancyNoteDAO(sm.getDataSource());
ArrayList<ItemDataBean> itemData = iddao.findAllByEventCRFId(eventCRF.getId());
request.setAttribute("items", itemData);
if ("confirm".equalsIgnoreCase(action)) {
request.setAttribute("displayEventCRF", dec);
forwardPage(Page.DELETE_EVENT_CRF);
} else {
logger.info("submit to delete the event CRF from event");
// OC-6303 Deleting Event CRF resets Show / Hide logic
// delete records from DynamicItemForm and DynamicItemGroup
getDynamicsItemFormMetadataDao().delete(eventCRFId);
getDynamicsItemGroupMetadataDao().delete(eventCRFId);
eventCRF.setOldStatus(eventCRF.getStatus());
eventCRF.setStatus(Status.RESET);
eventCRF.setUpdater(ub);
ecdao.update(eventCRF);
for (ItemDataBean itemdata : itemData) {
// OC-6343 Rule behaviour must be reset if an Event CRF is deleted
// delete the records from ruleActionRunLogDao
getRuleActionRunLogDao().delete(itemdata.getId());
// OC-6344 Notes & Discrepancies must be set to "closed" when event CRF is deleted
// parentDiscrepancyNoteList is the list of the parent DNs records only
ArrayList<DiscrepancyNoteBean> parentDiscrepancyNoteList =
getDnDao().findParentNotesOnlyByItemData(itemdata.getId());
for (DiscrepancyNoteBean parentDiscrepancyNote : parentDiscrepancyNoteList) {
if (parentDiscrepancyNote.getResolutionStatusId()
!= 4) { // if the DN's resolution status is not set to Closed
String description = resword.getString("dn_auto-closed_description");
String detailedNotes = resword.getString("dn_auto_closed_detailed_notes");
// create new DN record , new DN Map record , also update the parent record
createDiscrepancyNoteBean(
description, detailedNotes, itemdata.getId(), study, ub, parentDiscrepancyNote);
}
}
iddao = new ItemDataDAO(sm.getDataSource());
ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
ItemDataBean idBean = (ItemDataBean) iddao.findByPK(itemdata.getId());
ItemFormMetadataBean ifmBean =
ifmdao.findByItemIdAndCRFVersionId(idBean.getItemId(), crfVersionId);
// Updating Dn_item_data_map actovated column into false for the existing DNs
ArrayList<DiscrepancyNoteBean> dnBeans =
getDnDao().findExistingNotesForItemData(itemdata.getId());
if (dnBeans.size() != 0) {
DiscrepancyNoteBean dnBean = new DiscrepancyNoteBean();
dnBean.setEntityId(itemdata.getId());
dnBean.setActivated(false);
getDnDao().updateDnMapActivation(dnBean);
}
// Default Values are not addressed
itemdata.setValue("");
itemdata.setOldStatus(itemdata.getStatus());
itemdata.setOwner(ub);
itemdata.setStatus(Status.AVAILABLE);
itemdata.setUpdater(ub);
iddao.updateUser(itemdata);
iddao.update(itemdata);
}
// OC-6291 event_crf status change
eventCRF.setOldStatus(eventCRF.getStatus());
eventCRF.setStatus(Status.AVAILABLE);
eventCRF.setUpdater(ub);
ecdao.update(eventCRF);
if (event.getSubjectEventStatus().isCompleted()
|| event.getSubjectEventStatus().isSigned()) {
event.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
event.setUpdater(ub);
sedao = new StudyEventDAO(sm.getDataSource());
sedao.update(event);
}
String emailBody =
respage.getString("the_event_CRF")
+ cb.getName()
+ respage.getString("has_been_deleted_from_the_event")
+ event.getStudyEventDefinition().getName()
+ ". "
+ respage.getString("has_been_deleted_from_the_event_cont");
addPageMessage(emailBody);
// sendEmail(emailBody);
request.setAttribute("id", new Integer(studySubId).toString());
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
}
}
}
public static boolean parentNoteIsClosed(DiscrepancyNoteBean parentNote) {
if (parentNote.getResolutionStatusId() == ResolutionStatus.CLOSED.getId()) {
return true;
}
return false;
}
/*
* (non-Javadoc)
*
* @see org.akaza.openclinica.control.core.SecureController#processRequest()
*/
@Override
protected void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int noteId = fp.getInt(INPUT_NOTE_ID);
String module = (String) session.getAttribute("module");
// Integer subjectId = (Integer) session.getAttribute("subjectId");
StudySubjectDAO studySubjectDAO = new StudySubjectDAO(sm.getDataSource());
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
dndao.setFetchMapping(true);
// check that the note exists
DiscrepancyNoteBean discrepancyNoteBean = (DiscrepancyNoteBean) dndao.findByPK(noteId);
if (!discrepancyNoteBean.isActive()) {
throw new InconsistentStateException(
Page.MANAGE_STUDY_SERVLET,
resexception.getString("you_are_trying_resolve_discrepancy_not_exist"));
}
// check that the note has not already been closed
ArrayList children = dndao.findAllByParent(discrepancyNoteBean);
discrepancyNoteBean.setChildren(children);
// This logic has been reverted, issue-7459
// if (parentNoteIsClosed(discrepancyNoteBean)) {
// throw new InconsistentStateException(Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET,
// respage
// .getString("the_discrepancy_choose_has_been_closed_resolved_create_new"));
// }
// all clear, send the user to the resolved screen
String entityType = discrepancyNoteBean.getEntityType().toLowerCase();
discrepancyNoteBean.setResStatus(
ResolutionStatus.get(discrepancyNoteBean.getResolutionStatusId()));
discrepancyNoteBean.setDisType(
DiscrepancyNoteType.get(discrepancyNoteBean.getDiscrepancyNoteTypeId()));
// BWP 03/17/2009 3166: if it's not an ItemData type note, redirect
// Monitors to View Subject or
// View Study Events <<
if (currentRole.getRole().equals(Role.MONITOR)
&& !"itemdata".equalsIgnoreCase(entityType)
&& !"eventcrf".equalsIgnoreCase(entityType)) {
redirectMonitor(module, discrepancyNoteBean);
return;
}
// >>
// If Study is Frozen or Locked
if (currentStudy.getStatus().isFrozen()
&& !"itemdata".equalsIgnoreCase(entityType)
&& !"eventcrf".equalsIgnoreCase(entityType)) {
redirectMonitor(module, discrepancyNoteBean);
return;
}
boolean toView = false;
boolean isCompleted = false;
if ("itemdata".equalsIgnoreCase(entityType)) {
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
ItemDataBean idb = (ItemDataBean) iddao.findByPK(discrepancyNoteBean.getEntityId());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
EventCRFBean ecb = (EventCRFBean) ecdao.findByPK(idb.getEventCRFId());
StudySubjectBean studySubjectBean =
(StudySubjectBean) studySubjectDAO.findByPK(ecb.getStudySubjectId());
discrepancyNoteBean.setSubjectId(studySubjectBean.getId());
discrepancyNoteBean.setItemId(idb.getItemId());
if (ecb.getStatus().equals(Status.UNAVAILABLE)) {
isCompleted = true;
}
toView = true; // we want to go to view note page if the note is
// for item data
}
// logger.info("set up pop up url: " + createNoteURL);
// System.out.println("set up pop up url: " + createNoteURL);
boolean goNext =
prepareRequestForResolution(
request, sm.getDataSource(), currentStudy, discrepancyNoteBean, isCompleted);
Page p = getPageForForwarding(discrepancyNoteBean, isCompleted);
// logger.info("found page for forwarding: " + p.getFileName());
if (p == null) {
throw new InconsistentStateException(
Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET,
resexception.getString("the_discrepancy_note_triying_resolve_has_invalid_type"));
} else {
if (p.getFileName().contains("?")) {
if (!p.getFileName().contains("fromViewNotes=1")) {
p.setFileName(p.getFileName() + "&fromViewNotes=1");
}
} else {
p.setFileName(p.getFileName() + "?fromViewNotes=1");
}
String createNoteURL =
CreateDiscrepancyNoteServlet.getAddChildURL(
discrepancyNoteBean, ResolutionStatus.CLOSED, true);
setPopUpURL(createNoteURL);
}
if (!goNext) {
setPopUpURL("");
addPageMessage(
respage.getString("you_may_not_perform_admin_edit_on_CRF_not_completed_by_user"));
p = Page.VIEW_DISCREPANCY_NOTES_IN_STUDY_SERVLET;
}
forwardPage(p);
}