@SuppressWarnings({"unchecked"})
public SimulationPanel(final MainFrame frame, final PartitionDataList dataList) {
this.frame = frame;
this.dataList = dataList;
optionPanel = new OptionsPanel(12, 12, SwingConstants.CENTER);
simulationsNumberField = new WholeNumberField(1, Integer.MAX_VALUE);
simulationsNumberField.setColumns(10);
simulationsNumberField.setValue(dataList.simulationsCount);
optionPanel.addComponentWithLabel("Number of simulations:", simulationsNumberField);
setSeed = new JCheckBox();
setSeed.addItemListener(new SetSeedCheckBoxListener());
setSeed.setSelected(dataList.setSeed);
optionPanel.addComponentWithLabel("Set seed:", setSeed);
startingSeedNumberField = new WholeNumberField(1, Long.MAX_VALUE);
startingSeedNumberField.setColumns(10);
startingSeedNumberField.setValue(dataList.startingSeed);
startingSeedNumberField.setEnabled(dataList.setSeed);
optionPanel.addComponentWithLabel("Starting seed:", startingSeedNumberField);
outputFormat = new JComboBox();
optionPanel.addComponentWithLabel("Output format:", outputFormat);
outputFormatModel = new DefaultComboBoxModel(SimpleAlignment.OutputType.values());
outputFormat.setModel(outputFormatModel);
outputAncestralSequences = new JCheckBox();
outputAncestralSequences.addItemListener(new outputAncestralSequencesCheckBoxListener());
outputAncestralSequences.setSelected(dataList.useParallel);
optionPanel.addComponentWithLabel("Output ancestral sequences:", outputAncestralSequences);
useParallel = new JCheckBox();
useParallel.addItemListener(new UseParallelCheckBoxListener());
useParallel.setSelected(dataList.useParallel);
optionPanel.addComponentWithLabel("Use parallel implementation:", useParallel);
// Buttons holder
JPanel buttonsHolder = new JPanel();
buttonsHolder.setOpaque(false);
// simulate button
simulate = new JButton("Simulate", Utils.createImageIcon(Utils.BIOHAZARD_ICON));
simulate.addActionListener(new ListenSimulate());
buttonsHolder.add(simulate);
generateXML = new JButton("Generate XML", Utils.createImageIcon(Utils.HAMMER_ICON));
generateXML.addActionListener(new ListenGenerateXML());
buttonsHolder.add(generateXML);
setOpaque(false);
setLayout(new BorderLayout());
add(optionPanel, BorderLayout.NORTH);
add(buttonsHolder, BorderLayout.SOUTH);
} // END: SimulationPanel
public final void collectSettings() {
dataList.simulationsCount = simulationsNumberField.getValue();
if (dataList.setSeed) {
dataList.startingSeed = startingSeedNumberField.getValue();
}
dataList.outputFormat =
SimpleAlignment.OutputType.parseFromString(outputFormat.getSelectedItem().toString());
} // END: collectSettings