Beispiel #1
0
  @SuppressWarnings({"unchecked"})
  public SimulationPanel(final MainFrame frame, final PartitionDataList dataList) {

    this.frame = frame;
    this.dataList = dataList;

    optionPanel = new OptionsPanel(12, 12, SwingConstants.CENTER);

    simulationsNumberField = new WholeNumberField(1, Integer.MAX_VALUE);
    simulationsNumberField.setColumns(10);
    simulationsNumberField.setValue(dataList.simulationsCount);
    optionPanel.addComponentWithLabel("Number of simulations:", simulationsNumberField);

    setSeed = new JCheckBox();
    setSeed.addItemListener(new SetSeedCheckBoxListener());
    setSeed.setSelected(dataList.setSeed);
    optionPanel.addComponentWithLabel("Set seed:", setSeed);

    startingSeedNumberField = new WholeNumberField(1, Long.MAX_VALUE);
    startingSeedNumberField.setColumns(10);
    startingSeedNumberField.setValue(dataList.startingSeed);
    startingSeedNumberField.setEnabled(dataList.setSeed);
    optionPanel.addComponentWithLabel("Starting seed:", startingSeedNumberField);

    outputFormat = new JComboBox();
    optionPanel.addComponentWithLabel("Output format:", outputFormat);
    outputFormatModel = new DefaultComboBoxModel(SimpleAlignment.OutputType.values());
    outputFormat.setModel(outputFormatModel);

    outputAncestralSequences = new JCheckBox();
    outputAncestralSequences.addItemListener(new outputAncestralSequencesCheckBoxListener());
    outputAncestralSequences.setSelected(dataList.useParallel);
    optionPanel.addComponentWithLabel("Output ancestral sequences:", outputAncestralSequences);

    useParallel = new JCheckBox();
    useParallel.addItemListener(new UseParallelCheckBoxListener());
    useParallel.setSelected(dataList.useParallel);
    optionPanel.addComponentWithLabel("Use parallel implementation:", useParallel);

    // Buttons holder
    JPanel buttonsHolder = new JPanel();
    buttonsHolder.setOpaque(false);

    // simulate button
    simulate = new JButton("Simulate", Utils.createImageIcon(Utils.BIOHAZARD_ICON));
    simulate.addActionListener(new ListenSimulate());
    buttonsHolder.add(simulate);

    generateXML = new JButton("Generate XML", Utils.createImageIcon(Utils.HAMMER_ICON));
    generateXML.addActionListener(new ListenGenerateXML());
    buttonsHolder.add(generateXML);

    setOpaque(false);
    setLayout(new BorderLayout());
    add(optionPanel, BorderLayout.NORTH);
    add(buttonsHolder, BorderLayout.SOUTH);
  } // END: SimulationPanel
Beispiel #2
0
  public final void collectSettings() {

    dataList.simulationsCount = simulationsNumberField.getValue();
    if (dataList.setSeed) {
      dataList.startingSeed = startingSeedNumberField.getValue();
    }

    dataList.outputFormat =
        SimpleAlignment.OutputType.parseFromString(outputFormat.getSelectedItem().toString());
  } // END: collectSettings