@Override public <G, D, L> void exportParameters( ParameterHelper helper, DataDocument<G, D, L> document, D dictionary) { document.addToDictionary( dictionary, "$name", helper.toClassName(MutableMeasurementProfile.class)); if (intensityDeviation != 0 && !Double.isNaN(intensityDeviation)) document.addToDictionary(dictionary, "intensityDeviation", getIntensityDeviation()); if (getMedianNoiseIntensity() != 0 && !Double.isNaN(getMedianNoiseIntensity())) document.addToDictionary(dictionary, "medianNoiseIntensity", getMedianNoiseIntensity()); if (formulaConstraints != null) document.addToDictionary( dictionary, "formulaConstraints", helper.wrap(document, getFormulaConstraints())); if (getAllowedMassDeviation() != null) document.addToDictionary( dictionary, "allowedMassDeviation", getAllowedMassDeviation().toString()); if (getStandardMs1MassDeviation() != null) document.addToDictionary( dictionary, "standardMs1MassDeviation", getStandardMs1MassDeviation().toString()); if (getStandardMs2MassDeviation() != null) document.addToDictionary( dictionary, "standardMs2MassDeviation", getStandardMs2MassDeviation().toString()); if (getStandardMassDifferenceDeviation() != null) document.addToDictionary( dictionary, "standardMassDifferenceDeviation", getStandardMassDifferenceDeviation().toString()); }
@Override public <G, D, L> void exportParameters( ParameterHelper helper, DataDocument<G, D, L> document, D dictionary) { document.addToDictionary(dictionary, "score", penalty); }
@Override public <G, D, L> void exportParameters( ParameterHelper helper, DataDocument<G, D, L> document, D dictionary) { document.addToDictionary(dictionary, "zeroIntensity", zeroIntensity); document.addToDictionary(dictionary, "fullIntensity", fullIntensity); }