@Test
public void loadLoaderFactory() throws Exception {
IDataHolder dataHolder = LoaderFactory.getData(testFileFolder + file, null);
IDataset data = dataHolder.getDataset("Portable Grey Map");
// Check the first data point
assertEquals(data.getDouble(0, 0), 0.0, 0.0);
// Check the middle data point
assertEquals(data.getDouble(512, 511), 15104.0, 0.0);
// Check the last data point
assertEquals(data.getDouble(1023, 1023), 0.0, 0.0);
}
@Test
public void lazyLoadLoaderFactory() throws Exception {
IDataHolder dataHolder = LoaderFactory.getData(testFileFolder + file, true, true, true, null);
ILazyDataset lazy = dataHolder.getLazyDataset("Portable Grey Map");
assertArrayEquals(new int[] {1024, 1024}, lazy.getShape());
IDataset data = lazy.getSlice();
// Check the first data point
assertEquals(data.getDouble(0, 0), 0.0, 0.0);
// Check the middle data point
assertEquals(data.getDouble(512, 511), 15104.0, 0.0);
// Check the last data point
assertEquals(data.getDouble(1023, 1023), 0.0, 0.0);
}
public static IDataset interpolate(IDataset oldx, IDataset oldy, IDataset newx) {
// TODO more sanity checks on inputs
DoubleDataset dx = (DoubleDataset) DatasetUtils.cast(oldx, Dataset.FLOAT64);
DoubleDataset dy = (DoubleDataset) DatasetUtils.cast(oldy, Dataset.FLOAT64);
boolean sorted = true;
double maxtest = oldx.getDouble(0);
for (int i = 1; i < ((Dataset) oldx).count(); i++) {
if (maxtest > oldx.getDouble(i)) {
sorted = false;
break;
}
maxtest = dx.getDouble(i);
}
double[] sortedx = null;
double[] sortedy = null;
if (!sorted) {
IntegerDataset sIdx = getIndiciesOfSorted(dx);
sortedx = new double[dx.getData().length];
sortedy = new double[dy.getData().length];
for (int i = 0; i < sIdx.getSize(); i++) {
sortedx[i] = dx.getDouble(sIdx.get(i));
sortedy[i] = dy.getDouble(sIdx.get(i));
}
} else {
sortedx = dx.getData();
sortedy = dy.getData();
}
SplineInterpolator si = new SplineInterpolator();
PolynomialSplineFunction poly = si.interpolate(sortedx, sortedy);
IDataset newy = newx.clone();
newy.setName(oldy.getName() + "_interpolated");
for (int i = 0; i < ((Dataset) newx).count(); i++) {
newy.set(poly.value(newx.getDouble(i)), i);
}
return newy;
}
@Override
public double calculateSignificance(int position, int windowSize, IDataset yData) {
double posVal = yData.getDouble(position);
// Calculate the averages of the the left & right windows.
// N.B. left & right diffs are in opposite directions.
Double leftAvg = 0.0;
Double rightAvg = 0.0;
for (int i = 0; i < windowSize; i++) {
leftAvg = leftAvg + yData.getDouble(position - i - 1);
rightAvg = rightAvg + yData.getDouble(position + i + 1);
}
leftAvg = leftAvg / windowSize;
rightAvg = rightAvg / windowSize;
// Calculate the average of difference of the point and the averages (i.e. significance)
double sig = ((posVal - leftAvg) + (posVal - rightAvg)) / 2;
return sig;
}