protected void runScript(String[] cmd, JTextArea txaMsg) {
String strg = "";
if (cmd == null) return;
Process prcs = null;
try {
Messages.postDebug("Running script: " + cmd[2]);
Runtime rt = Runtime.getRuntime();
prcs = rt.exec(cmd);
if (prcs == null) return;
InputStream istrm = prcs.getInputStream();
if (istrm == null) return;
BufferedReader bfr = new BufferedReader(new InputStreamReader(istrm));
while ((strg = bfr.readLine()) != null) {
// System.out.println(strg);
strg = strg.trim();
// Messages.postDebug(strg);
strg = strg.toLowerCase();
if (txaMsg != null) {
txaMsg.append(strg);
txaMsg.append("\n");
}
}
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
Messages.postDebug(e.toString());
} finally {
// It is my understanding that these streams are left
// open sometimes depending on the garbage collector.
// So, close them.
try {
if (prcs != null) {
OutputStream os = prcs.getOutputStream();
if (os != null) os.close();
InputStream is = prcs.getInputStream();
if (is != null) is.close();
is = prcs.getErrorStream();
if (is != null) is.close();
}
} catch (Exception ex) {
Messages.writeStackTrace(ex);
}
}
}
protected void buildPanel(String strPath) {
BufferedReader reader = WFileUtil.openReadFile(strPath);
String strLine;
if (reader == null) return;
try {
while ((strLine = reader.readLine()) != null) {
if (strLine.startsWith("#") || strLine.startsWith("%") || strLine.startsWith("@"))
continue;
StringTokenizer sTokLine = new StringTokenizer(strLine, ":");
// first token is the label e.g. Password Length
if (sTokLine.hasMoreTokens()) {
createLabel(sTokLine.nextToken(), this);
}
// second token is the value
String strValue = sTokLine.hasMoreTokens() ? sTokLine.nextToken() : "";
if (strValue.equalsIgnoreCase("yes") || strValue.equalsIgnoreCase("no"))
createChkBox(strValue, this);
else createTxf(strValue, this);
}
} catch (Exception e) {
Messages.writeStackTrace(e);
// e.printStackTrace();
Messages.postDebug(e.toString());
}
}
public void buildPanel() {
String path = FileUtil.getLayoutPath(layoutDir, fname);
if (path == null) {
Messages.postError("Could not open xml file:" + fname);
return;
}
removeAll();
try {
LayoutBuilder.build(pane, vnmrIf, path);
} catch (Exception e) {
String strError = "Error building file: " + path;
Messages.postError(strError);
Messages.writeStackTrace(e);
return;
}
if (bScrollBar) {
spane =
new JScrollPane(
pane,
JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED,
JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
add(spane);
} else {
spane = null;
add(pane);
}
paramsLayout.preferredLayoutSize(pane);
}
/** Displays the labels and the values for the panel. */
protected void displayPnlFields(HashMap hmPnl) {
if (hmPnl == null || hmPnl.isEmpty()) return;
Iterator keySetItr = hmPnl.keySet().iterator();
String strLabel = "";
String strValue = "";
// if the file is empty, then create an empty set of textfields.
if (hmPnl == null || hmPnl.isEmpty()) {
displayNewTxf("", "");
return;
}
Container container = getParent();
if (container != null) container.setVisible(false);
try {
// Get each set of label and value, and display them.
while (keySetItr.hasNext()) {
strLabel = (String) keySetItr.next();
strValue = (String) hmPnl.get(strLabel);
displayNewTxf(strLabel, strValue);
}
if (container != null) container.setVisible(true);
revalidate();
repaint();
} catch (Exception e) {
Messages.writeStackTrace(e);
// e.printStackTrace();
Messages.postDebug(e.toString());
}
}
/** Write file with position and size of the login box */
public static void writePersistence() {
Messages.postDebug("LoginBox", "LoginBox.writePersistence");
// If the panel has not been created, don't try to write a file
if (position == null) return;
String filepath = FileUtil.savePath("USER/PERSISTENCE/LoginPanel");
FileWriter fw;
PrintWriter os;
try {
File file = new File(filepath);
fw = new FileWriter(file);
os = new PrintWriter(fw);
os.println("Login Panel");
os.println(height);
os.println(width);
double xd = position.getX();
int xi = (int) xd;
os.println(xi);
double yd = position.getY();
int yi = (int) yd;
os.println(yi);
os.close();
} catch (Exception er) {
Messages.postError("Problem creating " + filepath);
Messages.writeStackTrace(er);
}
}
private void setCaretValue(String s) {
try {
int i = Integer.parseInt(s);
setCaretValue(i);
} catch (NumberFormatException e) {
Messages.writeStackTrace(e);
// System.out.println("invalid caret position "+caretValue);
}
}
public void setVisible(boolean bShow, String title) {
if (bShow) {
String strDir = "";
String strFreq = "";
String strTraynum = "";
m_strHelpFile = getHelpFile(title);
String strSampleName = getSampleName(title);
String frameBounds = getFrameBounds(title);
StringTokenizer tok = new QuotedStringTokenizer(title);
if (tok.hasMoreTokens()) strDir = tok.nextToken();
if (tok.hasMoreTokens()) strFreq = tok.nextToken();
if (tok.hasMoreTokens()) strTraynum = tok.nextToken();
else {
try {
Integer.parseInt(strDir);
// if strdir is number, then strdir is empty, and the
// strfreq is the number
strTraynum = strFreq;
strFreq = strDir;
strDir = "";
} catch (Exception e) {
}
}
try {
setTitle(gettitle(strFreq));
m_lblSampleName.setText("3");
boolean bVast = isVast(strTraynum);
CardLayout layout = (CardLayout) m_pnlSampleName.getLayout();
if (!bVast) {
if (strSampleName == null) {
strSampleName = getSampleName(strDir, strTraynum);
}
m_lblSampleName.setText(strSampleName);
layout.show(m_pnlSampleName, OTHER);
} else {
m_strDir = strDir;
setTrays();
layout.show(m_pnlSampleName, VAST);
m_trayTimer.start();
}
boolean bSample = bVast || !strSampleName.trim().equals("");
m_pnlSampleName.setVisible(bSample);
m_lblLogin.setForeground(getBackground());
m_lblLogin.setVisible(false);
m_passwordField.setText("");
m_passwordField.setCaretPosition(0);
} catch (Exception e) {
Messages.writeStackTrace(e);
}
setBounds(frameBounds);
ExpPanel exp = Util.getActiveView();
if (exp != null) exp.waitLogin(true);
}
writePersistence();
setVisible(bShow);
}
protected String getSampleName(String strDir, String strTray) {
String strSampleName = "";
String strSample;
int nTray = 0;
try {
nTray = Integer.parseInt(strTray);
} catch (Exception e) {
}
if (nTray <= 0) return strSampleName;
String cmd =
"SELECT loc_,studystatus from study WHERE (autodir=\'"
+ strDir
+ "\') AND (hostname=\'"
+ getHost()
+ "\')";
// NB: bArrSample[0] is not used; array implicitly initialized false
boolean[] bArrSample = new boolean[nTray + 1];
m_dbResult = null;
try {
m_dbResult = getdbmanager().executeQuery(cmd);
} catch (Exception e) {
return strSampleName;
}
if (m_dbResult == null) return strSampleName;
try {
while (m_dbResult.next()) {
strSample = m_dbResult.getString(1);
int nSample = 0;
nSample = Integer.parseInt(strSample);
try {
bArrSample[nSample] = true;
} catch (IndexOutOfBoundsException ioobe) {
Messages.postDebug("getSampleName: index out of bounds: " + nSample);
}
}
for (int i = 1; i < bArrSample.length; i++) {
if (!bArrSample[i]) {
strSampleName = String.valueOf(i);
break;
}
}
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
return strSampleName;
}
private void addTool(String key, Class tool) {
Class[] constructArgs = null;
if (key.equals("XMLToolPanel")) {
constructArgs = new Class[3];
constructArgs[0] = vnmr.ui.SessionShare.class;
constructArgs[1] = String.class;
constructArgs[2] = String.class;
} else {
constructArgs = new Class[1];
constructArgs[0] = vnmr.ui.SessionShare.class;
}
try {
Constructor c = tool.getConstructor(constructArgs);
vobjs.put(key, c);
} catch (NoSuchMethodException nse) {
Messages.postError("Problem initiating " + key + " area.");
Messages.writeStackTrace(nse, tool + " not found.");
} catch (SecurityException se) {
Messages.postError("Problem initiating " + key + " area.");
Messages.writeStackTrace(se);
}
}
protected void setTrayPresent(String strPath) {
String strzone = "zones";
BufferedReader reader = WFileUtil.openReadFile(strPath);
if (reader == null) return;
String strLine;
try {
// if the zones are set to 0, then there is no tray present
// set rackInfo(1,zones) 3 => tray 1 present
// set rackInfo(2,zones) 0 => tray 2 not present
while ((strLine = reader.readLine()) != null) {
int index = strLine.indexOf(strzone);
if (index < 0) continue;
String strTray = strLine.substring(index - 2, index - 1);
int nTray = 0;
try {
nTray = Integer.parseInt(strTray);
} catch (Exception e) {
}
if (nTray <= 0) continue;
int nZone = 0;
try {
strTray = strLine.substring(index + strzone.length() + 2, strLine.length());
nZone = Integer.parseInt(strTray);
} catch (Exception e) {
}
Color colorbg = Color.white;
String strTooltip = TRAY;
if (nZone <= 0) {
colorbg = Color.black;
strTooltip = NOTRAY;
}
VBox pnlVast = m_pnlVast[nTray - 1];
pnlVast.setbackground(colorbg);
pnlVast.setToolTipText(Util.getTooltipString(strTooltip));
}
reader.close();
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
}
protected void setTrayActive(String strDir) {
String strTray;
String strStudy;
String strActive = "Active";
String cmd =
"SELECT vrack_,studystatus from study WHERE (autodir=\'"
+ strDir
+ "\') AND (hostname=\'"
+ getHost()
+ "\')";
m_dbResult = null;
try {
m_dbResult = getdbmanager().executeQuery(cmd);
} catch (Exception e) {
return;
}
if (m_dbResult == null) return;
int nTray = 0;
try {
while (m_dbResult.next()) {
strTray = m_dbResult.getString(1);
strStudy = m_dbResult.getString(2);
if (strStudy != null && strStudy.equalsIgnoreCase(strActive)) {
try {
nTray = Integer.parseInt(strTray);
} catch (Exception e) {
}
if (nTray > 0) {
m_pnlVast[nTray - 1].setbackground(Color.blue);
m_pnlVast[nTray - 1].setToolTipText(Util.getTooltipString(TRAYACTIVE));
break;
}
}
}
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
}
protected static boolean vnmrjPassword(String strUser, char[] password) {
boolean blogin = false;
try {
PasswordService objPassword = PasswordService.getInstance();
String encrPassword = objPassword.encrypt(new String(password));
if (pwprops == null) {
String strPath = FileUtil.openPath(WUserUtil.PASSWORD);
if (strPath == null) return blogin;
pwprops = new Properties();
FileInputStream fis = new FileInputStream(strPath);
pwprops.load(fis);
fis.close();
}
String stoPassword = pwprops.getProperty(strUser);
if (encrPassword.equals(stoPassword)) blogin = true;
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
return blogin;
}
protected void setVast() {
String strPath = FileUtil.openPath("SYSTEM/asm/gilsonNumber");
if (strPath == null) return;
BufferedReader reader = WFileUtil.openReadFile(strPath);
if (reader == null) return;
String strLine;
int i = 0;
try {
while ((strLine = reader.readLine()) != null) {
strLine = strLine.trim();
if (i == 0 || !m_aStrVast[i - 1].equals(strLine)) {
m_aStrVast[i] = strLine;
i = i + 1;
}
}
reader.close();
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
}
public void buildConfig() {
BufferedReader in = WFileUtil.openReadFile(m_strPath);
String strLine = null;
if (in == null) {
Messages.postError("Error opening file " + m_strPath);
return;
}
try {
m_pnlDisplay.removeAll();
m_pnlDisplay.setLayout(new WGridLayout(0, 2));
m_aListComp.clear();
while ((strLine = in.readLine()) != null) {
if (strLine.startsWith("#") || strLine.startsWith("%") || strLine.startsWith("@")) continue;
StringTokenizer sTokLine = new StringTokenizer(strLine, File.pathSeparator);
createJComps(sTokLine);
}
setVisible(true);
} catch (Exception e) {
// e.printStackTrace();
Messages.writeStackTrace(e);
}
}
/**
* Save the data to the file. Read the data from the file, and copy everything to the
* stringbuffer. The lines in the file are of the form:
* auditDir:system:/vnmr/part11/auditTrails:system file:standard:text:yes Based on these formats,
* get the value of either the directory or the checkbox from the corresponding components, and
* replace that value in the stringbuffer.
*/
protected void saveData() {
BufferedReader reader = WFileUtil.openReadFile(m_strPath);
String strLine = null;
StringBuffer sbData = new StringBuffer();
if (reader == null) return;
int nLineInd = 0;
try {
while ((strLine = reader.readLine()) != null) {
// if the line starts with a comment from sccs, add '#' to it,
// to make it a comment
if (strLine.startsWith("%") || strLine.startsWith("@")) strLine = "# " + strLine;
if (strLine.startsWith("#")) {
sbData.append(strLine + "\n");
continue;
}
StringTokenizer sTok = new StringTokenizer(strLine, File.pathSeparator);
boolean bFile = false;
boolean bLineEnd = false;
boolean bDir = false;
for (int i = 0; sTok.hasMoreTokens(); i++) {
String strValue = sTok.nextToken();
if (i == 0) {
bFile = strValue.equalsIgnoreCase("file") ? true : false;
bDir = false;
if (strValue.equalsIgnoreCase("dir")) bDir = true;
} else {
// Case => file:standard:procpar:yes
// skip over 'standard', 'procpar',
// and get the value 'yes' or 'no' from the checkbox
if (bFile) {
if (i == 3) {
String strNewValue = getValue(nLineInd);
if (strNewValue != null) strValue = strNewValue;
bLineEnd = true;
} else bLineEnd = false;
} else if (bDir) {
bLineEnd = false;
if (i == 3) bLineEnd = true;
}
// Case => part11Dir:/vnmr/part11/data 0r
// Case => dataType:FDA
// skip over 'part11Dir'
// and get the value of the directory from the textfield,
// or from the combobox
else {
if (i == 1) {
String strNewValue = getValue(nLineInd);
if (strNewValue != null) strValue = strNewValue;
bLineEnd = true;
} else bLineEnd = false;
}
}
// copy the value to the stringbuffer
sbData.append(strValue);
if (!bLineEnd) sbData.append(File.pathSeparator);
}
nLineInd++;
sbData.append("\n");
}
// write the data to the file
reader.close();
BufferedWriter writer = WFileUtil.openWriteFile(m_strPath);
WFileUtil.writeAndClose(writer, sbData);
m_objTimer =
new javax.swing.Timer(
200,
new ActionListener() {
public void actionPerformed(ActionEvent e) {
VItemAreaIF.firePropertyChng(Global.PART11_CONFIG_FILE, "all", "");
m_objTimer.stop();
}
});
m_objTimer.start();
} catch (Exception e) {
Messages.writeStackTrace(e);
// e.printStackTrace();
Messages.postDebug(e.toString());
}
}
/** Reads the file, and sets the label and the values in the hashmap. */
protected void setHM(String strPath, HashMap hmPnl) {
BufferedReader reader = WFileUtil.openReadFile(strPath);
boolean bFileEmpty = true;
boolean bPart11Pnl = isPart11Pnl();
boolean bDefaultFile = isDefaultFile();
// if the file is empty, then create an empty set of textfields.
if (reader == null) {
// displayNewTxf("","");
return;
}
String strLine = null;
StringTokenizer strTok;
try {
// read the file, and create a new set of textfields,
// with the values from the file.
while ((strLine = reader.readLine()) != null) {
String strLabel = "";
String strValue = "";
bFileEmpty = false;
if (strLine.startsWith("#")
|| strLine.startsWith("@")
|| strLine.startsWith("%")
|| strLine.startsWith("\"@")) continue;
if (strLine.startsWith("\"")) strTok = new StringTokenizer(strLine, "\"");
else strTok = new StringTokenizer(strLine, File.pathSeparator + ",\n");
if (!strTok.hasMoreTokens()) continue;
strLabel = strTok.nextToken();
// the format for the part11 Default file is a little different
// only parse out the part11Dir, and don't display other defaults
if (bPart11Pnl && bDefaultFile) {
if (!strLabel.equalsIgnoreCase("part11Dir")) continue;
}
if (strTok.hasMoreTokens()) {
while (strTok.hasMoreTokens()) {
strValue += strTok.nextToken();
if (strTok.hasMoreTokens()) strValue += " ";
}
}
// append "/data/$name" to part11Dir
if (bPart11Pnl && bDefaultFile && strLabel.equalsIgnoreCase("part11Dir")) {
StringBuffer sbDir = new StringBuffer(strValue);
if (sbDir.lastIndexOf(File.separator) < sbDir.length() - 1)
sbDir.append(File.separator);
sbDir.append("data" + File.separator + "$");
sbDir.append(WGlobal.NAME);
strValue = sbDir.toString();
}
// displayNewTxf(strLabel, strValue);
if (strLabel != null && strLabel.trim().length() > 0) hmPnl.put(strLabel, strValue);
}
reader.close();
} catch (Exception e) {
Messages.writeStackTrace(e);
// e.printStackTrace();
Messages.postDebug(e.toString());
}
}