public double calculateLogLikelihoodSingle(
int[] patternWeights,
int numberOfPatterns,
ConditionalProbabilityStore conditionalProbabilityStore) {
return base_.calculateLogLikelihoodSingle(
model_, patternWeights, numberOfPatterns, conditionalProbabilityStore);
}
public void calculateSingleExtendedDirect(
double distance,
int numberOfPatterns,
ConditionalProbabilityStore conditionalProbabilities) {
base_.calculateSingleExtendedDirect(
distance, model_, numberOfPatterns, conditionalProbabilities);
}
public double calculateLogLikelihood(
PatternInfo centerPattern,
ConditionalProbabilityStore leftConditionalProbabilities,
ConditionalProbabilityStore rightConditionalProbabilities) {
return base_.calculateLogLikelihood(
model_, centerPattern, leftConditionalProbabilities, rightConditionalProbabilities);
}
public void calculateFlat(
PatternInfo centerPattern,
ConditionalProbabilityStore leftConditionalProbabilities,
ConditionalProbabilityStore rightConditionalProbabilities,
ConditionalProbabilityStore resultStore) {
base_.calculateFlat(
centerPattern, leftConditionalProbabilities, rightConditionalProbabilities, resultStore);
}
public SiteDetails calculateSiteDetailsRooted(
PatternInfo centerPattern,
ConditionalProbabilityStore leftConditionalProbabilitiesStore,
ConditionalProbabilityStore rightConditionalProbabilitiesStore) {
return base_.calculateSiteDetailsRooted(
model_,
centerPattern,
leftConditionalProbabilitiesStore,
rightConditionalProbabilitiesStore);
}
public double calculateLogLikelihood(
double distance,
PatternInfo centerPattern,
ConditionalProbabilityStore leftFlatConditionalProbabilities,
ConditionalProbabilityStore rightFlatConditionalProbabilities,
ConditionalProbabilityStore tempStore) {
return base_.calculateLogLikelihood(
distance,
model_,
centerPattern,
leftFlatConditionalProbabilities,
rightFlatConditionalProbabilities,
tempStore);
}
public void calculateExtended(
double distance,
PatternInfo centerPattern,
ConditionalProbabilityStore leftConditionalProbabilities,
ConditionalProbabilityStore rightConditionalProbabilities,
ConditionalProbabilityStore resultStore) {
base_.calculateExtended(
distance,
model_,
centerPattern,
leftConditionalProbabilities,
rightConditionalProbabilities,
resultStore);
}
public SiteDetails calculateSiteDetailsUnrooted(
double distance,
PatternInfo centerPattern,
ConditionalProbabilityStore leftConditionalProbabilitiesStore,
ConditionalProbabilityStore rightConditionalProbabilitiesStore,
ConditionalProbabilityStore tempStore) {
return base_.calculateSiteDetailsUnrooted(
distance,
model_,
centerPattern,
leftConditionalProbabilitiesStore,
rightConditionalProbabilitiesStore,
tempStore);
}
