public double calculateLogLikelihoodSingle( int[] patternWeights, int numberOfPatterns, ConditionalProbabilityStore conditionalProbabilityStore) { return base_.calculateLogLikelihoodSingle( model_, patternWeights, numberOfPatterns, conditionalProbabilityStore); }
public void calculateSingleExtendedDirect( double distance, int numberOfPatterns, ConditionalProbabilityStore conditionalProbabilities) { base_.calculateSingleExtendedDirect( distance, model_, numberOfPatterns, conditionalProbabilities); }
public double calculateLogLikelihood( PatternInfo centerPattern, ConditionalProbabilityStore leftConditionalProbabilities, ConditionalProbabilityStore rightConditionalProbabilities) { return base_.calculateLogLikelihood( model_, centerPattern, leftConditionalProbabilities, rightConditionalProbabilities); }
public void calculateFlat( PatternInfo centerPattern, ConditionalProbabilityStore leftConditionalProbabilities, ConditionalProbabilityStore rightConditionalProbabilities, ConditionalProbabilityStore resultStore) { base_.calculateFlat( centerPattern, leftConditionalProbabilities, rightConditionalProbabilities, resultStore); }
public SiteDetails calculateSiteDetailsRooted( PatternInfo centerPattern, ConditionalProbabilityStore leftConditionalProbabilitiesStore, ConditionalProbabilityStore rightConditionalProbabilitiesStore) { return base_.calculateSiteDetailsRooted( model_, centerPattern, leftConditionalProbabilitiesStore, rightConditionalProbabilitiesStore); }
public double calculateLogLikelihood( double distance, PatternInfo centerPattern, ConditionalProbabilityStore leftFlatConditionalProbabilities, ConditionalProbabilityStore rightFlatConditionalProbabilities, ConditionalProbabilityStore tempStore) { return base_.calculateLogLikelihood( distance, model_, centerPattern, leftFlatConditionalProbabilities, rightFlatConditionalProbabilities, tempStore); }
public void calculateExtended( double distance, PatternInfo centerPattern, ConditionalProbabilityStore leftConditionalProbabilities, ConditionalProbabilityStore rightConditionalProbabilities, ConditionalProbabilityStore resultStore) { base_.calculateExtended( distance, model_, centerPattern, leftConditionalProbabilities, rightConditionalProbabilities, resultStore); }
public SiteDetails calculateSiteDetailsUnrooted( double distance, PatternInfo centerPattern, ConditionalProbabilityStore leftConditionalProbabilitiesStore, ConditionalProbabilityStore rightConditionalProbabilitiesStore, ConditionalProbabilityStore tempStore) { return base_.calculateSiteDetailsUnrooted( distance, model_, centerPattern, leftConditionalProbabilitiesStore, rightConditionalProbabilitiesStore, tempStore); }