/** @see {@link LogicService#getRule(String)} */
@Test
@Verifies(value = "should return ReferenceRule", method = "getRule(String)")
public void getRule_shouldReturnReferenceRule() throws Exception {
Rule rule = Context.getLogicService().getRule("%%person.birthdate");
Assert.assertNotNull(rule);
Assert.assertTrue(rule.getClass().isAssignableFrom(ReferenceRule.class));
}
/** TODO: should we still support this kind of notation? */
public void shouldReferenceRule() {
LogicService logicService = Context.getLogicService();
Cohort patients = new Cohort();
Map<Integer, Result> result = null;
patients.addMember(2);
try {
result = logicService.eval(patients, "%%obs.CD4 COUNT");
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("%%obs.CD4 COUNT").first());
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("%%person.BIRTHDATE"));
Assert.assertNotNull(result);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.YEAR, 1980);
cal.set(Calendar.MONTH, 0);
cal.set(Calendar.DAY_OF_MONTH, 1);
result =
logicService.eval(
patients, new LogicCriteriaImpl("%%person.BIRTHDATE").before(cal.getTime()));
Assert.assertNotNull(result);
} catch (LogicException e) {
log.error("Error generated", e);
}
}
/** @see {@link LogicService#getRule(String)} */
@Test(expected = LogicException.class)
@Verifies(
value = "should fail when no Rule is associated with the input token",
method = "getRule(String)")
public void getRule_shouldFailWhenNoRuleIsAssociatedWithTheInputToken() throws Exception {
Rule rule = Context.getLogicService().getRule("UNKNOWN RULE");
Assert.assertNull(rule);
}
/** @see {@link LogicService#findToken(String)} */
@Test
@Verifies(
value = "should return all registered token matching the input fully",
method = "getTokens(String)")
public void getTokens_shouldReturnAllRegisteredTokenMatchingTheInputFully() throws Exception {
LogicService logicService = Context.getLogicService();
List<String> tokens = logicService.getTokens("AGE");
Assert.assertEquals(1, tokens.size());
}
/** @see {@link LogicService#getRule(String)} */
@Test
@Verifies(
value = "should return Rule associated with the input token",
method = "getRule(String)")
public void getRule_shouldReturnRuleAssociatedWithTheInputToken() throws Exception {
Rule ageRule = Context.getLogicService().getRule("AGE");
Assert.assertNotNull(ageRule);
Assert.assertTrue(AgeRule.class.isAssignableFrom(ageRule.getClass()));
}
/** @see {@link LogicService#removeRule(String)} */
@Test(expected = LogicException.class)
@Verifies(value = "should remove rule", method = "removeRule(String)")
public void removeRule_shouldRemoveRule() throws Exception {
LogicService logicService = Context.getLogicService();
Rule ageRule = logicService.getRule("AGE");
Assert.assertNotNull(ageRule);
logicService.removeRule("AGE");
Rule afterDeleteAgeRule = logicService.getRule("AGE");
Assert.assertNull(afterDeleteAgeRule);
}
/** @see {@link LogicService#addTokenTag(String,String)} */
@Test
@Verifies(value = "should add tag for a token", method = "addTokenTag(String,String)")
public void addTokenTag_shouldAddTagForAToken() throws Exception {
LogicService logicService = Context.getLogicService();
int initialTags = logicService.getTokenTags("HIV POSITIVE").size();
logicService.addTokenTag("HIV POSITIVE", "a tag");
int finalTags = logicService.getTokenTags("HIV POSITIVE").size();
Assert.assertEquals(initialTags + 1, finalTags);
}
/** @see {@link LogicService#findToken(String)} */
@Test
@Verifies(
value = "should return all registered token matching the input partially",
method = "getTokens(String)")
public void getTokens_shouldReturnAllRegisteredTokenMatchingTheInputPartially() throws Exception {
LogicService logicService = Context.getLogicService();
Context.getService(TokenService.class)
.registerToken("One Another", new ClassRuleProvider(), "one");
Context.getService(TokenService.class)
.registerToken("Two Another", new ClassRuleProvider(), "two");
List<String> tokens = logicService.getTokens("ANOTHER");
Assert.assertEquals(2, tokens.size());
}
/** @see {@link LogicService#getTokensByTag(String)} */
@Test
@Verifies(
value = "should return set of token associated with a tag",
method = "getTokensWithTag(String)")
public void getTokensWithTag_shouldReturnSetOfTokenAssociatedWithATag() throws Exception {
LogicService logicService = Context.getLogicService();
String[] setOfTags = {"birth", "date", "born"};
Context.getService(TokenService.class)
.registerToken("ANOTHER AGE RULE", new ClassRuleProvider(), AgeRule.class.getName());
for (String tag : setOfTags) logicService.addTokenTag("ANOTHER AGE RULE", tag);
Collection<String> tokens = logicService.getTokensWithTag("birth");
Assert.assertEquals(1, tokens.size());
}
/** TODO make this test use assert statements instead of printing to stdout */
@Test
public void shouldHIVPositiveRule() {
LogicService logicService = Context.getLogicService();
Cohort patients = new Cohort();
Map<Integer, Result> result = null;
patients.addMember(2);
try {
result =
logicService.eval(
patients,
new LogicCriteriaImpl("PROBLEM ADDED")
.contains("HUMAN IMMUNODEFICIENCY VIRUS")
.first());
Assert.assertNotNull(result);
result =
logicService.eval(
patients, new LogicCriteriaImpl("PROBLEM ADDED").contains("HIV INFECTED").first());
Assert.assertNotNull(result);
result =
logicService.eval(
patients,
new LogicCriteriaImpl("PROBLEM ADDED")
.contains("ASYMPTOMATIC HIV INFECTION")
.first());
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("HIV VIRAL LOAD").first());
Assert.assertNotNull(result);
result =
logicService.eval(patients, new LogicCriteriaImpl("HIV VIRAL LOAD, QUALITATIVE").first());
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").lt(200).first());
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("HIV POSITIVE"));
Assert.assertNotNull(result);
} catch (LogicException e) {
log.error("Error generated", e);
}
}
/** @see {@link LogicService#findTags(String)} */
@Test
@Verifies(
value = "should return set of tags matching input tag partially",
method = "getTags(String)")
public void getTags_shouldReturnSetOfTagsMatchingInputTagPartially() throws Exception {
LogicService logicService = Context.getLogicService();
TokenService tokenService = Context.getService(TokenService.class);
String[] similarTags = {"tags01", "tags02", "tags03", "tags04", "tags05"};
Rule rule = logicService.getRule("AGE");
Assert.assertNotNull(rule);
tokenService.registerToken("ANOTHER AGE", new ClassRuleProvider(), AgeRule.class.getName());
for (String tag : similarTags) logicService.addTokenTag("ANOTHER AGE", tag);
List<String> tags = logicService.getTags("tags");
Assert.assertEquals(similarTags.length, tags.size());
}
/** @see {@link LogicService#removeTokenTag(String,String)} */
@Test
@Verifies(value = "should remove tag from a token", method = "removeTokenTag(String,String)")
public void removeTokenTag_shouldRemoveTagFromAToken() throws Exception {
LogicService logicService = Context.getLogicService();
String[] setOfTags = {"birth", "date", "born"};
Context.getService(TokenService.class)
.registerToken("ANOTHER AGE RULE", new ClassRuleProvider(), AgeRule.class.getName());
for (String tag : setOfTags) logicService.addTokenTag("ANOTHER AGE RULE", tag);
Collection<String> retrievedTags = logicService.getTokenTags("ANOTHER AGE RULE");
Assert.assertEquals(setOfTags.length, retrievedTags.size());
logicService.removeTokenTag("ANOTHER AGE RULE", "date");
retrievedTags = logicService.getTokenTags("ANOTHER AGE RULE");
Assert.assertEquals(setOfTags.length - 1, retrievedTags.size());
}
/** @see {@link LogicService#getTagsByToken(String)} */
@Test
@Verifies(
value = "should return set of tags for a certain token",
method = "getTokenTags(String)")
public void getTokenTags_shouldReturnSetOfTagsForACertainToken() throws Exception {
LogicService logicService = Context.getLogicService();
String[] setOfTags = {"birth", "date", "born"};
Context.getService(TokenService.class)
.registerToken("ANOTHER AGE RULE", new ClassRuleProvider(), AgeRule.class.getName());
for (String tag : setOfTags) logicService.addTokenTag("ANOTHER AGE RULE", tag);
Set<String> retrievedTags = logicService.getTokenTags("ANOTHER AGE RULE");
Assert.assertEquals(setOfTags.length, retrievedTags.size());
logicService.addTokenTag("ANOTHER AGE RULE", "tag");
retrievedTags = logicService.getTokenTags("ANOTHER AGE RULE");
Assert.assertEquals(setOfTags.length + 1, retrievedTags.size());
}
/** TODO make this test use assert statements instead of printing to stdout */
@Test
public void shouldDemographicsRule() {
LogicService logicService = Context.getLogicService();
Cohort patients = new Cohort();
Map<Integer, Result> result;
patients.addMember(2);
try {
result = logicService.eval(patients, new LogicCriteriaImpl("BIRTHDATE"));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("AGE"));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("AGE").gt(10));
Assert.assertNotNull(result);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.YEAR, 2000);
result = logicService.eval(patients, new LogicCriteriaImpl("BIRTHDATE").after(cal.getTime()));
Assert.assertNotNull(result);
result =
logicService.eval(patients, new LogicCriteriaImpl("BIRTHDATE").before(cal.getTime()));
Assert.assertNotNull(result);
// test the index date functionality
Calendar index = Calendar.getInstance();
index.set(1970, 0, 1);
result = logicService.eval(patients, new LogicCriteriaImpl("BIRTHDATE"));
Assert.assertNotNull(result);
result =
logicService.eval(patients, new LogicCriteriaImpl("BIRTHDATE").within(Duration.years(5)));
Assert.assertNotNull(result);
} catch (LogicException e) {
log.error("testDemographicsRule: Error generated", e);
}
}
/** @see {@link LogicService#getTokens()} */
@Test
@Verifies(value = "should return all registered token", method = "getAllTokens()")
public void getAllTokens_shouldReturnAllRegisteredToken() throws Exception {
Collection<String> tokens = Context.getLogicService().getAllTokens();
Assert.assertEquals(19, tokens.size());
}
/** @see {@link LogicService#findToken(String)} */
@Test
@Verifies(value = "should not fail when input is null", method = "getTokens(String)")
public void getTokens_shouldNotFailWhenInputIsNull() throws Exception {
Collection<String> tokens = Context.getLogicService().getTokens(null);
Assert.assertNotNull(tokens);
}
/** TODO make this test use assert statements instead of printing to stdout */
@Test
public void shouldObservationRule() {
LogicService logicService = Context.getLogicService();
Cohort patients = new Cohort();
Map<Integer, Result> result = null;
patients.addMember(2);
try {
Result r = logicService.eval(2, new LogicCriteriaImpl("CD4 COUNT"));
Assert.assertNotNull(r);
Assert.assertEquals(0, r.size());
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT"));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").lt(170));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").gt(185));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").equalTo(190));
Assert.assertNotNull(result);
Calendar cal = Calendar.getInstance();
cal.set(2006, 3, 11);
result =
logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").before(cal.getTime()));
Assert.assertNotNull(result);
result =
logicService.eval(
patients, new LogicCriteriaImpl("CD4 COUNT").lt(190).before(cal.getTime()));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").after(cal.getTime()));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").last());
Assert.assertNotNull(result);
result =
logicService.eval(
patients, new LogicCriteriaImpl("CD4 COUNT").last().before(cal.getTime()));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").not().lt(150));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").not().not().lt(150));
Assert.assertNotNull(result);
patients.addMember(2);
patients.addMember(3);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT").lt(200));
Assert.assertNotNull(result);
patients.addMember(39);
result =
logicService.eval(
patients,
new LogicCriteriaImpl("PROBLEM ADDED").contains("HUMAN IMMUNODEFICIENCY VIRUS"));
Assert.assertNotNull(result);
result = logicService.eval(patients, new LogicCriteriaImpl("CD4 COUNT"));
Assert.assertNotNull(result);
result =
logicService.eval(
patients, new LogicCriteriaImpl("CD4 COUNT").within(Duration.months(1)));
Assert.assertNotNull(result);
} catch (LogicException e) {
log.error("testObservationRule: Error generated", e);
}
}
public class getLastObs implements Rule {
private Log log = LogFactory.getLog(this.getClass());
private LogicService logicService = Context.getLogicService();
/**
* *
*
* @see org.openmrs.logic.rule.Rule#getParameterList()
*/
public Set<RuleParameterInfo> getParameterList() {
return null;
}
/**
* *
*
* @see org.openmrs.logic.rule.Rule#getDependencies()
*/
public String[] getDependencies() {
return new String[] {};
}
/**
* *
*
* @see org.openmrs.logic.rule.Rule#getTTL()
*/
public int getTTL() {
return 0; // 60 * 30; // 30 minutes
}
/**
* *
*
* @see org.openmrs.logic.rule.Rule#getDatatype(String)
*/
public Datatype getDefaultDatatype() {
return Datatype.CODED;
}
/**
* Limits results by a given encounter id
*
* @see org.openmrs.logic.Rule#eval(org.openmrs.logic.LogicContext, org.openmrs.Patient,
* java.util.Map)
*/
public Result eval(LogicContext context, Integer patientId, Map<String, Object> parameters)
throws LogicException {
if (parameters == null) {
return Result.emptyResult();
}
String conceptName = (String) parameters.get("param1");
if (conceptName == null) {
return Result.emptyResult();
}
Result ruleResult = null;
Integer encounterId = (Integer) parameters.get("encounterId");
if (encounterId == null) {
return Result.emptyResult();
}
LogicCriteria conceptCriteria = new LogicCriteriaImpl(conceptName);
LogicCriteria fullCriteria = null;
LogicCriteria encounterCriteria =
new LogicCriteriaImpl("encounterId").equalTo(encounterId.intValue());
fullCriteria = conceptCriteria.and(encounterCriteria);
ruleResult = context.read(patientId, context.getLogicDataSource("obs"), fullCriteria.last());
if (ruleResult != null && ruleResult.size() > 0) {
return ruleResult.get(0);
}
return Result.emptyResult();
}
}