/** @see {@link OrderValidator#validate(Object,Errors)} */
@Test
@Verifies(
value = "should pass validation if field lengths are correct",
method = "validate(Object,Errors)")
public void validate_shouldPassValidationIfFieldLengthsAreCorrect() throws Exception {
Order order = new Order();
Encounter encounter = new Encounter();
order.setConcept(Context.getConceptService().getConcept(88));
order.setOrderer(Context.getProviderService().getProvider(1));
Patient patient = Context.getPatientService().getPatient(2);
encounter.setPatient(patient);
order.setPatient(patient);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.DAY_OF_MONTH, cal.get(Calendar.DAY_OF_MONTH) - 1);
order.setDateActivated(cal.getTime());
order.setAutoExpireDate(new Date());
order.setCareSetting(new CareSetting());
order.setEncounter(encounter);
order.setUrgency(Order.Urgency.ROUTINE);
order.setAction(Order.Action.NEW);
order.setOrderReasonNonCoded("orderReasonNonCoded");
order.setAccessionNumber("accessionNumber");
order.setCommentToFulfiller("commentToFulfiller");
order.setVoidReason("voidReason");
Errors errors = new BindException(order, "order");
new OrderValidator().validate(order, errors);
Assert.assertFalse(errors.hasErrors());
}
/**
* Processes requests to retire concept reference terms
*
* @param request the {@link WebRequest} object
* @param conceptReferenceTermModel the concept reference term model for the term to retire
* @param retireReason the reason why the concept reference term is being retired
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/retireConceptReferenceTerm")
public String retireConceptReferenceTerm(
WebRequest request,
@ModelAttribute(value = "conceptReferenceTermModel")
ConceptReferenceTermModel conceptReferenceTermModel,
@RequestParam(required = false, value = "retireReason") String retireReason) {
if (!StringUtils.hasText(retireReason)) {
retireReason = Context.getMessageSourceService().getMessage("general.default.retireReason");
}
try {
ConceptReferenceTerm conceptReferenceTerm =
conceptReferenceTermModel.getConceptReferenceTerm();
Context.getConceptService().retireConceptReferenceTerm(conceptReferenceTerm, retireReason);
if (log.isDebugEnabled()) {
log.debug("Retired concept reference term with id: " + conceptReferenceTerm.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.retired"),
WebRequest.SCOPE_SESSION);
return "redirect:" + FIND_CONCEPT_REFERENCE_TERM_URL;
} catch (APIException e) {
log.error("Error occurred while retiring concept reference term", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.retire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred
return CONCEPT_REFERENCE_TERM_FORM;
}
/**
* Processes requests to purge a concept reference term
*
* @param request the {@link WebRequest} object
* @param conceptReferenceTermModel
* @return the url to forward to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/purgeConceptReferenceTerm")
public String purgeTerm(
WebRequest request,
@ModelAttribute(value = "conceptReferenceTermModel")
ConceptReferenceTermModel conceptReferenceTermModel) {
Integer id = conceptReferenceTermModel.getConceptReferenceTerm().getId();
try {
Context.getConceptService()
.purgeConceptReferenceTerm(conceptReferenceTermModel.getConceptReferenceTerm());
if (log.isDebugEnabled()) {
log.debug("Purged concept reference term with id: " + id);
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.purged"),
WebRequest.SCOPE_SESSION);
return "redirect:" + FIND_CONCEPT_REFERENCE_TERM_URL;
} catch (APIException e) {
log.warn("Error occurred while attempting to purge concept reference term", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.purge.error"),
WebRequest.SCOPE_SESSION);
}
// send the user back to form
return "redirect:" + CONCEPT_REFERENCE_TERM_FORM_URL + ".form?conceptReferenceTermId=" + id;
}
/**
* gets patients pediatrics who have adult who stage
*
* @param session
* @return patientsPediatricsWhoHaveAdultWhoStage
*/
public List<Patient> getPatientsPediatricsWhoHaveAdultWhoStage() {
List<Patient> patientsInHIVProgram = new ArrayList<Patient>();
List<Patient> patientsPediatricsInHIVProgram = new ArrayList<Patient>();
List<Patient> patientsPediatricsWhoHaveAdultWhoStage = new ArrayList<Patient>();
List<Patient> patientsWhoHaveAdultWhoStage = new ArrayList<Patient>();
// List<Person> persons = new ArrayList<Person>();
// List<Obs> observers = new ArrayList<Obs>();
ProgramWorkflowService programService = Context.getProgramWorkflowService();
Program program = programService.getProgram(2);
patientsInHIVProgram = getPatientsCurrentlyInHIVProgram(program);
for (Patient patient : patientsInHIVProgram) {
if (patient.getAge() < 15) {
patientsPediatricsInHIVProgram.add(patient);
}
}
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Integer> patientIds = dqs.getPatientsWhoHaveAdultWhoStage();
for (Integer patientId : patientIds) {
patientsWhoHaveAdultWhoStage.add(getPatientById(patientId));
}
for (Patient patient : patientsWhoHaveAdultWhoStage) {
if (patientsPediatricsInHIVProgram.contains(patient)) {
patientsPediatricsWhoHaveAdultWhoStage.add(patient);
}
}
return patientsPediatricsWhoHaveAdultWhoStage;
}
/** @see org.openmrs.module.web.extension.AdministrationSectionExt#getLinks() */
@Override
public Map<String, String> getLinks() {
Map<String, String> map = new LinkedHashMap<String, String>();
if (Context.hasPrivilege(ReportingConstants.PRIV_RUN_REPORTS)) {
map.put("module/amrsreports/mohRender.form", "Run AMRS Reports");
}
if (Context.hasPrivilege(ReportingConstants.PRIV_VIEW_REPORTS)) {
map.put("module/amrsreports/mohHistory.form", "View AMRS Reports");
}
if (Context.hasPrivilege(PrivilegeConstants.VIEW_LOCATIONS)) {
map.put("module/amrsreports/facility.list", "View MOH Facilities");
}
if (Context.hasPrivilege(ReportingConstants.PRIV_RUN_REPORTS)) {
map.put("/module/amrsreports/cohortCounts.list", "View Cohort Counts");
}
if (Context.hasPrivilege(ReportingConstants.PRIV_RUN_REPORTS)) {
map.put("module/amrsreports/locationPrivileges.form", "Location Privileges");
}
map.put("module/amrsreports/settings.form", "Settings");
return map;
}
/**
* Processes requests to retire a concept map type
*
* @param request the {@link WebRequest} object
* @param conceptMapType the concept map type object to retire
* @param retireReason the reason why the concept map type is getting retired
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/retireConceptMapType")
public String retireConceptMapType(
WebRequest request,
@ModelAttribute(value = "conceptMapType") ConceptMapType conceptMapType,
@RequestParam(required = false, value = "retireReason") String retireReason) {
if (!StringUtils.hasText(retireReason)) {
retireReason = Context.getMessageSourceService().getMessage("general.default.retireReason");
}
try {
Context.getConceptService().retireConceptMapType(conceptMapType, retireReason);
if (log.isDebugEnabled()) {
log.debug("Retired concept map type with id: " + conceptMapType.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.retired"),
WebRequest.SCOPE_SESSION);
return "redirect:" + CONCEPT_MAP_TYPE_LIST_URL + ".list";
} catch (APIException e) {
log.error("Error occurred while attempting to retire concept map type", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.retire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred
return CONCEPT_MAP_TYPE_FORM;
}
/**
* @see RegimenManager#findDefinitions(String, org.openmrs.module.kenyaemr.regimen.RegimenOrder,
* boolean)
*/
@Test
public void findDefinitions_shouldFindDefinitionsForRegimen() {
// Create regimen that matches the regimen2 definition exactly
DrugOrder lamivudine = new DrugOrder();
lamivudine.setConcept(Context.getConceptService().getConcept(78643));
lamivudine.setDose(150d);
lamivudine.setUnits("mg");
lamivudine.setFrequency("BD");
DrugOrder stavudine = new DrugOrder();
stavudine.setConcept(Context.getConceptService().getConcept(84309));
stavudine.setDose(30d);
stavudine.setUnits("mg");
stavudine.setFrequency("OD");
RegimenOrder regimen =
new RegimenOrder(new HashSet<DrugOrder>(Arrays.asList(lamivudine, stavudine)));
// Test exact match
List<RegimenDefinition> defsExact = regimenManager.findDefinitions("category1", regimen, true);
Assert.assertEquals(1, defsExact.size());
Assert.assertEquals("regimen2", defsExact.get(0).getName());
// Test non-exact match
List<RegimenDefinition> defsNonExact =
regimenManager.findDefinitions("category1", regimen, false);
Assert.assertEquals(2, defsNonExact.size());
Assert.assertEquals("regimen2", defsNonExact.get(0).getName());
Assert.assertEquals("regimen3", defsNonExact.get(1).getName());
}
public ModelAndView handleRequest(HttpServletRequest request, HttpServletResponse response)
throws ServletException, IOException {
ModelMap model = new ModelMap();
// Integer patientId = (Integer) request.getAttribute("patientId");
String patientIdStr = (String) request.getParameter("patientId");
Integer patientId = Integer.valueOf(patientIdStr);
Patient p = Context.getPatientService().getPatient(patientId);
System.out.println(
"PatientNotesPortletController handleRequest **************************\n"
+ "Patient id: "
+ patientIdStr);
model.put("patient", p);
List<Note> nots = Context.getService(NoteService.class).getNotesByPatient(p);
ArrayList<Note> notes = new ArrayList<Note>();
if (nots.size() > 4) {
for (int i = 0; i < 4; i++) {
notes.add(nots.get(i));
}
} else {
notes.addAll(nots);
}
model.put("notes", notes);
String filepath;
// Put any files for reading in the following directory - unix/windows
if (OpenmrsConstants.UNIX_BASED_OPERATING_SYSTEM) {
filepath = System.getProperty("user.home") + File.separator + ".OpenMRS";
} else {
filepath =
System.getProperty("user.home")
+ File.separator
+ "Application Data"
+ File.separator
+ "OpenMRS";
}
filepath = filepath + File.separator;
File folder = new File(filepath);
if (!folder.exists()) {
model.put("prop", "NO SUCH FILE");
return new ModelAndView("/module/basicmodule/portlets/patientNotes", model);
}
BufferedReader r;
try {
String line = "";
r = new BufferedReader(new FileReader(filepath + "openmrs-runtime.properties.txtt"));
for (int i = 0; i < 3; i++) {
line += r.readLine() + "<br>";
}
System.out.println(
"Property file: " + filepath + "openmrs-runtime.properties.txtt" + " Line: " + line);
model.put("prop", line);
r.close();
} catch (Exception ex) {
Logger.getLogger(PatientNotesController.class.getName()).log(Level.SEVERE, null, ex);
}
return new ModelAndView("/module/basicmodule/portlets/patientNotes", model);
}
/**
* @see LabCatalogService#getLabTestPanels(String,Boolean,Integer,Integer)
* @verifies return LabTestPanel by String nameFragment, Boolean includeVoided, Integer start,
* Integer length
*/
@Test
public void
getLabTestPanels_shouldReturnLabTestPanelByStringNameFragmentBooleanIncludeVoidedIntegerStartIntegerLength()
throws Exception {
List<LabTestPanel> list;
// verify default case works like getAllLabTestPanels()
list = Context.getService(LabCatalogService.class).getLabTestPanels("", Boolean.FALSE, 0, 4);
Assert.assertNotNull("getAllLabTestPanels should not return null", list);
Assert.assertEquals("getAllLabTestPanels should return the right objects", 4, list.size());
// verify get by nameFragment
list =
Context.getService(LabCatalogService.class)
.getLabTestPanels("Hematology Panel", Boolean.FALSE, 0, 4);
Assert.assertNotNull("getLabTestPanels should not return null", list);
Assert.assertEquals(
"getLabTestPanels should return the right object when using name fragment",
"05de81e6-46d9-11e1-99f4-0024e8c61285",
list.get(0).getUuid());
// verify start and length restrictions
list = Context.getService(LabCatalogService.class).getLabTestPanels("", Boolean.FALSE, 1, 2);
Assert.assertNotNull("getLabTestPanels should not return null", list);
Assert.assertEquals(
"getLabTestPanels should return the right amount of objects", 2, list.size());
Assert.assertEquals(
"getLabTestPanels should return the right object",
"05dec1ac-46d9-11e1-99f4-0024e8c61285",
list.get(0).getUuid());
Assert.assertEquals(
"getLabTestPanels should return the right object",
"05df00e1-46d9-11e1-99f4-0024e8c61285",
list.get(1).getUuid());
}
/**
* Gets a concept by an identifier (mapping or UUID)
*
* @param identifier the identifier
* @return the concept
* @throws org.openmrs.module.metadatadeploy.MissingMetadataException if the concept could not be
* found
*/
public static Concept getConcept(String identifier) {
Concept concept;
if (identifier.contains(":")) {
String[] tokens = identifier.split(":");
concept = Context.getConceptService().getConceptByMapping(tokens[1].trim(), tokens[0].trim());
} else {
// Assume it's a UUID
concept = Context.getConceptService().getConceptByUuid(identifier);
}
if (concept == null) {
throw new MissingMetadataException(Concept.class, identifier);
}
// getConcept doesn't always return ConceptNumeric for numeric concepts
if (concept.getDatatype().isNumeric() && !(concept instanceof ConceptNumeric)) {
concept = Context.getConceptService().getConceptNumeric(concept.getId());
if (concept == null) {
throw new MissingMetadataException(ConceptNumeric.class, identifier);
}
}
return concept;
}
private List<String> getRefTermAncestors(
UiSessionContext context, String id, Locale locale, ConceptSource conceptSource)
throws Exception {
ConceptService conceptService = (ConceptService) Context.getService(ConceptService.class);
ConceptManagementAppsService conceptManagementAppsService =
(ConceptManagementAppsService) Context.getService(ConceptManagementAppsService.class);
// there are no mappings so we need to send it through blank and let the user know
if (StringUtils.isEmpty(id) || StringUtils.isBlank(id) || id.contains("empty")) {
id = "0";
Set<ConceptReferenceTerm> parentTerms = new HashSet<ConceptReferenceTerm>();
Set<ConceptReferenceTerm> childTerms = new HashSet<ConceptReferenceTerm>();
return formatByRefTermForUIWithGson(conceptService, id, childTerms, parentTerms, locale);
}
Set<ConceptReferenceTerm> parentTerms =
conceptManagementAppsService.getRefTermParentReferenceTerms(
conceptService.getConceptReferenceTerm(Integer.parseInt(id)), conceptSource);
Set<ConceptReferenceTerm> childTerms =
conceptManagementAppsService.getRefTermChildReferenceTerms(
conceptService.getConceptReferenceTerm(Integer.parseInt(id)), conceptSource);
return formatByRefTermForUIWithGson(conceptService, id, childTerms, parentTerms, locale);
}
/** @see Moh731CohortLibrary#revisitsArt() */
@Test
public void revisitsArt() throws Exception {
EncounterType hivConsult =
MetadataUtils.getEncounterType(HivMetadata._EncounterType.HIV_CONSULTATION);
Concept stavudine = Context.getConceptService().getConcept(84309);
// Start patient #6 this month and give them a visit in the reporting period + 2 months
TestUtils.saveDrugOrder(TestUtils.getPatient(6), stavudine, TestUtils.date(2012, 6, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(6), hivConsult, TestUtils.date(2012, 6, 20));
// Start patient #7 in previous month and give them a visit in the reporting period + 2 months
TestUtils.saveDrugOrder(TestUtils.getPatient(7), stavudine, TestUtils.date(2012, 5, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(7), hivConsult, TestUtils.date(2012, 6, 20));
// Start patient #8 and give them visit outside of reporting period + 2 month window
TestUtils.saveDrugOrder(TestUtils.getPatient(8), stavudine, TestUtils.date(2012, 1, 10), null);
TestUtils.saveEncounter(TestUtils.getPatient(8), hivConsult, TestUtils.date(2012, 1, 20));
CohortDefinition cd = moh731Cohorts.revisitsArt();
context.addParameterValue("fromDate", PERIOD_START);
context.addParameterValue("toDate", PERIOD_END);
EvaluatedCohort evaluated =
Context.getService(CohortDefinitionService.class).evaluate(cd, context);
ReportingTestUtils.assertCohortEquals(Arrays.asList(7), evaluated);
}
@Test
public void evaluate_shouldReturnHivPatientsNotScreenedForTb() throws Exception {
// Get HIV Program and TB screening encounter type
Program hivProgram = MetadataUtils.getProgram(Metadata.HIV_PROGRAM);
EncounterType screeningEncType =
MetadataUtils.getEncounterType(Metadata.TB_SCREENING_ENCOUNTER_TYPE);
// Enroll patients #6 and #7
PatientService ps = Context.getPatientService();
TestUtils.enrollInProgram(ps.getPatient(6), hivProgram, TestUtils.date(2011, 1, 1));
TestUtils.enrollInProgram(ps.getPatient(7), hivProgram, TestUtils.date(2011, 1, 1));
// Screen patient #6 for TB a year later
TestUtils.saveEncounter(ps.getPatient(6), screeningEncType, TestUtils.date(2012, 1, 1));
Context.flushSession();
List<Integer> cohort = Arrays.asList(6, 7, 8);
CalculationResultMap resultMap =
Context.getService(PatientCalculationService.class)
.evaluate(cohort, new NeverScreenedForTbCalculation());
Assert.assertFalse((Boolean) resultMap.get(6).getValue());
Assert.assertTrue((Boolean) resultMap.get(7).getValue());
Assert.assertNull(resultMap.get(8)); // not in HIV program
}
/**
* Gets the default locale specified as a global property.
*
* @return default locale object.
* @since 1.5
* @should not return null if global property does not exist
* @should not fail with empty global property value
* @should not fail with bogus global property value
* @should return locale object for global property
* @should not cache locale when session is not open
*/
public static Locale getDefaultLocale() {
if (defaultLocaleCache == null) {
if (Context.isSessionOpen()) {
try {
String locale =
Context.getAdministrationService()
.getGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_DEFAULT_LOCALE);
if (StringUtils.hasLength(locale)) {
try {
defaultLocaleCache = fromSpecification(locale);
} catch (Exception t) {
log.warn("Unable to parse default locale global property value: " + locale, t);
}
}
} catch (Exception e) {
// swallow most of the stack trace for most users
log.warn("Unable to get locale global property value. " + e.getMessage());
log.trace("Unable to get locale global property value", e);
}
// if we weren't able to load the locale from the global property,
// use the default one
if (defaultLocaleCache == null)
defaultLocaleCache =
fromSpecification(OpenmrsConstants.GLOBAL_PROPERTY_DEFAULT_LOCALE_DEFAULT_VALUE);
} else {
// if session is not open, return the default locale without caching
return fromSpecification(OpenmrsConstants.GLOBAL_PROPERTY_DEFAULT_LOCALE_DEFAULT_VALUE);
}
}
return defaultLocaleCache;
}
/** @see org.openmrs.api.EncounterService#purgeEncounter(Encounter, boolean) */
public void purgeEncounter(Encounter encounter, boolean cascade) throws APIException {
// if authenticated user is not supposed to edit encounter of certain type
if (!canEditEncounter(encounter, null)) {
throw new APIException(
"Encounter.error.privilege.required.purge",
new Object[] {encounter.getEncounterType().getEditPrivilege()});
}
if (cascade) {
ObsService obsService = Context.getObsService();
List<Encounter> justThisEncounter = new ArrayList<Encounter>();
justThisEncounter.add(encounter);
List<Obs> observations = new Vector<Obs>();
observations.addAll(
obsService.getObservations(
null, justThisEncounter, null, null, null, null, null, null, null, null, null, true));
for (Obs o : observations) {
obsService.purgeObs(o);
}
Set<Order> orders = encounter.getOrders();
for (Order o : orders) {
Context.getOrderService().purgeOrder(o);
}
}
Context.getEncounterService().purgeEncounter(encounter);
}
@Test
@Verifies(
value = "should return encounter with all child objects voided according to schema",
method = "voidEncounterByHtmlFormSchema")
public void testVoidEncounterByHtmlFormSchema_shouldReturnEncounterVoided() throws Exception {
executeDataSet(
XML_DATASET_PATH + new TestUtil().getTestDatasetFilename(XML_REGRESSION_TEST_DATASET));
Encounter e = new Encounter();
e.setPatient(Context.getPatientService().getPatient(2));
Date date = Context.getDateFormat().parse("01/02/2003");
e.setDateCreated(new Date());
e.setEncounterDatetime(date);
e.setLocation(Context.getLocationService().getLocation(2));
e.setProvider(Context.getPersonService().getPerson(502));
// add a bunch of obs...
TestUtil.addObs(e, 2474, Context.getConceptService().getConcept(656), date); // matches
Form form = new Form();
HtmlForm htmlform = new HtmlForm();
htmlform.setForm(form);
form.setEncounterType(new EncounterType());
htmlform.setDateChanged(new Date());
htmlform.setXmlData(
new TestUtil()
.loadXmlFromFile(
XML_DATASET_PATH + "returnSectionsAndConceptsInSectionsTestFormWithGroups.xml"));
HtmlFormEntryUtil.voidEncounterByHtmlFormSchema(e, htmlform, null);
// this is going to test out the voided state of the obs in the encounter after processing:
Assert.assertTrue(e.isVoided());
}
public List<SimpleObject> getPatients(
@RequestParam(value = "searchValue", required = true) String searchValue,
@RequestParam(value = "excludePatientsOf", required = false) Person excludePatientsOf,
@RequestParam(value = "existingRelationshipTypeToExclude", required = false)
RelationshipType existingRelationshipTypeToExclude,
@RequestParam(value = "resultFields[]", required = true) String[] resultFields,
UiUtils ui)
throws PersonIsNotProviderException, InvalidRelationshipTypeException {
if (resultFields == null || resultFields.length == 0) {
resultFields = new String[] {"personName"};
}
// always want to return the id of the result objects
resultFields = ArrayUtils.add(resultFields, "id");
// now fetch the results
List<Patient> patients = Context.getPatientService().getPatients(searchValue);
// exclude any patients if specified
if (excludePatientsOf != null && existingRelationshipTypeToExclude != null) {
List<Patient> patientsToExclude =
Context.getService(ProviderManagementService.class)
.getPatientsOfProvider(
excludePatientsOf, existingRelationshipTypeToExclude, new Date());
patients.removeAll(patientsToExclude);
}
return SimpleObject.fromCollection(patients, ui, resultFields);
}
@Test
@Verifies(
value = "should return program enrollment after specified date",
method = "getClosestFutureProgramEnrollment(Patient,Program,Date)")
public void shouldReturnPatientProgramWithEnrollmentAfterSpecifiedDate() throws Exception {
// load this data set so that we get the additional patient program created in this data case
executeDataSet(
XML_DATASET_PATH + new TestUtil().getTestDatasetFilename(XML_REGRESSION_TEST_DATASET));
ProgramWorkflowService pws = Context.getProgramWorkflowService();
Patient patient = Context.getPatientService().getPatient(2);
Program program = pws.getProgram(1);
Calendar cal = Calendar.getInstance();
cal.set(2001, 6, 31);
Date date = cal.getTime();
PatientProgram pp = HtmlFormEntryUtil.getClosestFutureProgramEnrollment(patient, program, date);
Assert.assertEquals("32296060-03aa-102d-b0e3-001ec94a0cc5", pp.getUuid());
// now, if we roll the date back a year earlier, it should get the earlier of the two programs
// for this patient
cal.set(2000, 6, 31);
date = cal.getTime();
pp = HtmlFormEntryUtil.getClosestFutureProgramEnrollment(patient, program, date);
Assert.assertEquals("32596060-03aa-102d-b0e3-001ec94a0cc5", pp.getUuid());
}
/**
* Processes requests to unretire a concept map type
*
* @param request the {@link WebRequest} object
* @param conceptMapType the concept map type object to unretire
* @return the url to redirect to
*/
@RequestMapping(method = RequestMethod.POST, value = "/admin/concepts/unretireConceptMapType")
public String unretireConceptMapType(
WebRequest request, @ModelAttribute(value = "conceptMapType") ConceptMapType conceptMapType) {
try {
Context.getConceptService().unretireConceptMapType(conceptMapType);
if (log.isDebugEnabled()) {
log.debug("Unretired concept map type with id: " + conceptMapType.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.unretired"),
WebRequest.SCOPE_SESSION);
return "redirect:" + CONCEPT_MAP_TYPE_LIST_URL + ".list";
} catch (APIException e) {
log.error("Error occurred while attempting to unretire concept map type", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptMapType.unretire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred
return CONCEPT_MAP_TYPE_FORM;
}
@RequestMapping("/module/hirifxray/participant.form")
public String viewParticipant(
ModelMap model,
@RequestParam(value = "id", required = true) Integer id,
@RequestParam(value = "type", required = false) Concept type,
@RequestParam(value = "xrayId", required = false) Encounter encounter) {
User currentUser = Context.getAuthenticatedUser();
if (currentUser == null) {
return "redirect:/login.htm";
}
Xray xray = new Xray(encounter);
model.addAttribute("type", type);
model.addAttribute("xray", xray);
Patient patient = Context.getPatientService().getPatient(id);
model.addAttribute("patient", patient);
model.addAttribute("xrayTypes", HirifMetadata.getXrayTypes());
model.addAttribute("xraysByType", HirifUtil.getXraysByType(patient));
model.addAttribute("xrayLocations", HirifMetadata.getXrayLocations());
model.addAttribute("xrayStatuses", HirifMetadata.getXrayStatuses());
model.addAttribute("notDoneStatus", HirifMetadata.getNotDoneStatus());
model.addAttribute("completedStatus", HirifMetadata.getCompletedStatus());
return null;
}
/**
* Refresh the local cache of Flags by loading all enabled Flags from the database Also refresh
* the privilege cache Note that flags and tags must be eagerly loaded for this to work
*/
private void refreshCache() {
// get the enabled flags and all tags for the flag and tag caches
flagCache = dao.getAllEnabledFlags();
tagCache = getAllTags();
// alphabetize the flags, and sort by by priority ranking so that result sets are returned that
// way
Collections.sort(flagCache, new FlagAlphaComparator());
Collections.sort(flagCache, new FlagPriorityComparator());
// get the privileges associate with the patient flags default user for the privileges cache
try {
Context.addProxyPrivilege("View Users");
String username =
Context.getAdministrationService().getGlobalProperty("patientflags.username");
User user = Context.getUserService().getUserByUsername(username);
if (user != null) {
if (user.isSuperUser()) { // need to explicitly get all privileges if user is a super user
privilegeCache = Context.getUserService().getAllPrivileges();
} else {
privilegeCache = user.getPrivileges();
}
} else {
privilegeCache = null;
}
} finally {
Context.removeProxyPrivilege("View Users");
}
// set the initialized flag to true
isInitialized = true;
}
@Test
public void should_fail_to_persist_if_conceptSetRow_introduces_cycle() throws Exception {
ConceptSetRow row1 = new ConceptSetRow();
row1.name = "ConceptA";
row1.conceptClass = "New Class";
row1.description = "some description";
List<KeyValue> children = new ArrayList<>();
children.add(new KeyValue("1", "Child1"));
children.add(new KeyValue("2", "Child2"));
row1.children = children;
Messages persistErrorMessages = conceptSetPersister.persist(row1);
assertTrue(persistErrorMessages.isEmpty());
Context.openSession();
Context.authenticate("admin", "test");
Concept persistedConcept = conceptService.getConceptByName(row1.name);
assertNotNull(persistedConcept);
ConceptSetRow row2 = new ConceptSetRow();
row2.name = "Child2";
row2.conceptClass = "New Class";
row2.description = "some description";
List<KeyValue> children1 = new ArrayList<>();
children1.add(new KeyValue("1", "ConceptA"));
children1.add(new KeyValue("2", "Child3"));
row2.children = children1;
Messages persistErrorMessages1 = conceptSetPersister.persist(row2);
assertFalse(persistErrorMessages1.isEmpty());
Context.flushSession();
Context.closeSession();
}
/**
* @return string representation of the result. For non-text results, this will either be the
* overridden text value (if specifically defined) or a string representation of the default
* datatype value. If the result is a list, then the string representation of all members a
* joined with commas.
*/
public String toString() {
if (isSingleResult()) {
if (datatype == null) {
return valueText == null ? "" : valueText;
}
switch (datatype) {
case BOOLEAN:
return (valueBoolean ? "true" : "false");
case CODED:
return (valueCoded == null ? "" : valueCoded.getBestName(Context.getLocale()).getName());
case DATETIME:
return (valueDatetime == null ? "" : Context.getDateFormat().format(valueDatetime));
case NUMERIC:
return (valueNumeric == null ? "" : String.valueOf(valueNumeric));
case TEXT:
return (valueText == null ? "" : valueText);
default:
return valueText;
}
}
StringBuffer s = new StringBuffer();
for (Result r : this) {
if (s.length() > 0) {
s.append(",");
}
s.append(r.toString());
}
return s.toString();
}
@Test
public void addSetMembers() throws Exception {
ConceptSetRow conceptRow = new ConceptSetRow();
conceptRow.name = "New concept";
conceptRow.conceptClass = "New Class";
conceptRow.description = "some description";
List<KeyValue> children = new ArrayList<>();
children.add(new KeyValue("1", "Child1"));
children.add(new KeyValue("2", "Child2"));
conceptRow.children = children;
Messages persistErrorMessages = conceptSetPersister.persist(conceptRow);
assertTrue(persistErrorMessages.isEmpty());
Context.openSession();
Context.authenticate("admin", "test");
Concept persistedConcept = conceptService.getConceptByName(conceptRow.name);
assertNotNull(persistedConcept);
assertEquals(conceptRow.name, persistedConcept.getName(Context.getLocale()).getName());
assertEquals(conceptRow.conceptClass, persistedConcept.getConceptClass().getName());
assertEquals("some description", persistedConcept.getDescription().getDescription());
assertEquals(2, persistedConcept.getSetMembers().size());
assertEquals("some description", persistedConcept.getDescription().getDescription());
assertEquals(0, persistedConcept.getSynonyms().size());
assertTrue(persistedConcept.isSet());
Context.flushSession();
Context.closeSession();
}
private DicomObject doNCreate(DicomObject rq, DicomObject data, DicomObject rsp)
throws DicomServiceException {
String iuid = rq.getString(Tag.AffectedSOPInstanceUID);
if (iuid == null) iuid = rsp.getString(Tag.AffectedSOPInstanceUID);
File f = mkFile(iuid);
if (f.exists()) {
throw new DicomServiceException(rq, Status.DuplicateSOPinstance);
}
data.initFileMetaInformation(
UID.ModalityPerformedProcedureStepSOPClass, iuid, UID.ExplicitVRLittleEndian);
try {
store(f, data);
try {
Context.openSession();
DicomUtils.updateStudyPerformedStatusByMpps(data);
} catch (Exception e) {
debug("Can not update database with");
debug(data.toString());
e.printStackTrace();
} finally {
Context.closeSession();
}
} catch (Exception e) {
throw new DicomServiceException(rq, Status.ProcessingFailure);
}
return null;
}
/**
* Creates a new person stub.
*
* @param given
* @param middle
* @param family
* @param birthdate
* @param dateformat
* @param age
* @param gender
* @return PersonListItem person stub created
*/
public Object createPerson(
String given,
String middle,
String family,
String birthdate,
String dateformat,
String age,
String gender) {
log.error(
given
+ " "
+ middle
+ " "
+ family
+ " "
+ birthdate
+ " "
+ dateformat
+ " "
+ age
+ " "
+ gender);
User user = Context.getAuthenticatedUser();
Person p = new Person();
p.setPersonCreator(user);
p.setPersonDateCreated(new Date());
p.setPersonChangedBy(user);
p.setPersonDateChanged(new Date());
if (StringUtils.isEmpty(gender)) {
log.error("Gender cannot be null.");
return String.valueOf("Gender cannot be null.");
} else if (gender.toUpperCase().contains("M")) {
p.setGender("M");
} else if (gender.toUpperCase().contains("F")) {
p.setGender("F");
} else {
log.error("Gender must be 'M' or 'F'.");
return new String("Gender must be 'M' or 'F'.");
}
if ("".equals(given) || "".equals(family)) {
log.error("Given name and family name cannot be null.");
return new String("Given name and family name cannot be null.");
}
PersonName name = new PersonName(given, middle, family);
name.setCreator(user);
name.setDateCreated(new Date());
name.setChangedBy(user);
name.setDateChanged(new Date());
p.addName(name);
try {
Date d = updateAge(birthdate, dateformat, age);
p.setBirthdate(d);
} catch (java.text.ParseException pe) {
log.error(pe);
return new String("Birthdate cannot be parsed.");
}
p.setGender(gender);
Person person = Context.getPersonService().savePerson(p);
return PersonListItem.createBestMatch(person);
}
/**
* Processes requests to unretire concept reference terms
*
* @param request the {@link WebRequest} object
* @param conceptReferenceTermModel the concept reference term model object for the term to
* unretire
* @param retireReason the reason why the concept reference term is being unretired
* @return the url to redirect to
*/
@RequestMapping(
method = RequestMethod.POST,
value = "/admin/concepts/unretireConceptReferenceTerm")
public String unretireConceptReferenceTerm(
WebRequest request,
@ModelAttribute(value = "conceptReferenceTermModel")
ConceptReferenceTermModel conceptReferenceTermModel) {
try {
ConceptReferenceTerm conceptReferenceTerm =
conceptReferenceTermModel.getConceptReferenceTerm();
Context.getConceptService().unretireConceptReferenceTerm(conceptReferenceTerm);
if (log.isDebugEnabled()) {
log.debug("Unretired concept reference term with id: " + conceptReferenceTerm.getId());
}
request.setAttribute(
WebConstants.OPENMRS_MSG_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.unretired"),
WebRequest.SCOPE_SESSION);
return "redirect:"
+ CONCEPT_REFERENCE_TERM_FORM_URL
+ ".form?conceptReferenceTermId="
+ conceptReferenceTerm.getConceptReferenceTermId();
} catch (APIException e) {
log.error("Error occurred while unretiring concept reference term", e);
request.setAttribute(
WebConstants.OPENMRS_ERROR_ATTR,
Context.getMessageSourceService().getMessage("ConceptReferenceTerm.unretire.error"),
WebRequest.SCOPE_SESSION);
}
// an error occurred, show the form
return CONCEPT_REFERENCE_TERM_FORM;
}
/** @see org.openmrs.api.EncounterService#unvoidEncounter(org.openmrs.Encounter) */
public Encounter unvoidEncounter(Encounter encounter) throws APIException {
// if authenticated user is not supposed to edit encounter of certain type
if (!canEditEncounter(encounter, null)) {
throw new APIException(
"Encounter.error.privilege.required.unvoid",
new Object[] {encounter.getEncounterType().getEditPrivilege()});
}
String voidReason = encounter.getVoidReason();
if (voidReason == null) {
voidReason = "";
}
ObsService os = Context.getObsService();
for (Obs o : encounter.getObsAtTopLevel(true)) {
if (voidReason.equals(o.getVoidReason())) {
os.unvoidObs(o);
}
}
OrderService orderService = Context.getOrderService();
for (Order o : encounter.getOrders()) {
if (voidReason.equals(o.getVoidReason())) {
orderService.unvoidOrder(o);
}
}
encounter.setVoided(false);
encounter.setVoidedBy(null);
encounter.setDateVoided(null);
encounter.setVoidReason(null);
Context.getEncounterService().saveEncounter(encounter);
return encounter;
}
/**
* @see
* org.springframework.web.servlet.mvc.SimpleFormController#referenceData(javax.servlet.http.HttpServletRequest,
* java.lang.Object, org.springframework.validation.Errors)
*/
protected Map<String, Object> referenceData(HttpServletRequest request, Object obj, Errors errs)
throws Exception {
Drug drug = (Drug) obj;
Map<String, Object> map = new HashMap<String, Object>();
String defaultVerbose = "false";
if (Context.isAuthenticated()) {
if (drug.getConcept() != null)
map.put("conceptName", drug.getConcept().getName(request.getLocale()));
defaultVerbose =
Context.getAuthenticatedUser()
.getUserProperty(OpenmrsConstants.USER_PROPERTY_SHOW_VERBOSE);
}
map.put("defaultVerbose", defaultVerbose.equals("true") ? true : false);
String editReason = request.getParameter("editReason");
if (editReason == null) editReason = "";
map.put("editReason", editReason);
return map;
}
/** @see {@link OrderValidator#validate(Object,Errors)} */
@Test
@Verifies(
value = "should pass validation if all fields are correct",
method = "validate(Object,Errors)")
public void validate_shouldPassValidationIfAllFieldsAreCorrect() throws Exception {
Order order = new DrugOrder();
Encounter encounter = new Encounter();
order.setConcept(Context.getConceptService().getConcept(88));
order.setOrderer(Context.getProviderService().getProvider(1));
Patient patient = Context.getPatientService().getPatient(2);
encounter.setPatient(patient);
order.setPatient(patient);
Calendar cal = Calendar.getInstance();
cal.set(Calendar.DAY_OF_MONTH, cal.get(Calendar.DAY_OF_MONTH) - 1);
order.setDateActivated(cal.getTime());
order.setAutoExpireDate(new Date());
order.setCareSetting(new CareSetting());
order.setEncounter(encounter);
order.setUrgency(Order.Urgency.ROUTINE);
order.setAction(Order.Action.NEW);
order.setOrderType(Context.getOrderService().getOrderTypeByName("Drug order"));
Errors errors = new BindException(order, "order");
new OrderValidator().validate(order, errors);
Assert.assertFalse(errors.hasErrors());
}