@Override
public ModuleQuestionnaireBean getModuleQnBean() {
String baseProtocolNumber = protocol.getProtocolNumber();
baseProtocolNumber = baseProtocolNumber.replaceAll("[A-Z]+", "");
return new ProtocolModuleQuestionnaireBean(
getModuleCode(),
baseProtocolNumber,
CoeusSubModule.PROTOCOL_SUBMISSION,
StringUtils.isNotBlank(submissionNumber) ? submissionNumber : actionTypeCode,
StringUtils.isNotBlank(submissionNumber)
|| protocol.getProtocolNumber().endsWith(SUFFIX_T)
|| readOnlyView);
}
@Override
public List<CommitteeMembershipBase> getAvailableCommitteeMembersForCurrentSubmission(
ProtocolBase protocol) {
List<CommitteeMembershipBase> results = new ArrayList<CommitteeMembershipBase>();
ProtocolSubmissionBase submission = protocol.getProtocolSubmission();
submission.refreshReferenceObject("protocolOnlineReviews");
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Fetching available committee members for protocol %s, submission %s",
protocol.getProtocolNumber(), submission.getSubmissionNumber()));
}
List<ProtocolOnlineReviewBase> currentReviews = submission.getProtocolOnlineReviews();
List<CommitteeMembershipBase> committeeMembers =
getCommitteeService()
.getAvailableMembers(submission.getCommitteeId(), submission.getScheduleId());
// TODO: Make this better.
for (CommitteeMembershipBase member : committeeMembers) {
boolean found = false;
for (ProtocolOnlineReviewBase review : currentReviews) {
if (review.getProtocolReviewer().isProtocolReviewerFromCommitteeMembership(member)
&& review.isActive()) {
found = true;
break;
}
}
if (!found && !isProtocolPersonnel(protocol, member)) {
results.add(member);
}
}
return results;
}
protected void buildAndAttachProtocolCorrespondence(
ProtocolBase protocol, byte[] data, String correspTypeCode) {
ProtocolCorrespondence protocolCorrespondence = getNewProtocolCorrespondenceHook();
protocolCorrespondence.setProtocol(protocol);
protocolCorrespondence.setProtocolId(protocol.getProtocolId());
protocolCorrespondence.setProtocolNumber(protocol.getProtocolNumber());
protocolCorrespondence.setSequenceNumber(protocol.getSequenceNumber());
protocolCorrespondence.setProtoCorrespTypeCode(correspTypeCode);
ProtocolActionBase lastAction = protocol.getLastProtocolAction();
protocolCorrespondence.setProtocolAction(lastAction);
protocolCorrespondence.setActionIdFk(lastAction.getProtocolActionId());
protocolCorrespondence.setCorrespondence(data);
protocolCorrespondence.setActionId(lastAction.getActionId());
// What is Final flag used for? ANSWER: the final flag is used by the IRB admin to denote
// correspondences
// that are ready to be sent/published to the PI etc.
protocolCorrespondence.setFinalFlag(false);
protocolCorrespondence.setCreateUser(GlobalVariables.getUserSession().getPrincipalName());
protocolCorrespondence.setCreateTimestamp(dateTimeService.getCurrentTimestamp());
if (lastAction.getProtocolCorrespondences() == null) {
List<ProtocolCorrespondence> correspondences = new ArrayList<ProtocolCorrespondence>();
correspondences.add(protocolCorrespondence);
lastAction.setProtocolCorrespondences(correspondences);
protocol.refreshReferenceObject("protocolSubmissions");
} else {
lastAction.getProtocolCorrespondences().add(protocolCorrespondence);
}
getBusinessObjectService().save(protocolCorrespondence);
getBusinessObjectService().save(protocol);
}
/**
* Is the protocol an amendment or renewal protocol? Including continuation here - since
* continuation is similar to renewal
*
* @param protocol the protocol
* @return true if the protocol is an amendment or renewal; otherwise false
*/
protected final boolean isAmendmentOrRenewal(ProtocolBase protocol) {
return protocol.getProtocolNumber() != null
&& (protocol.getProtocolNumber().contains("A")
|| protocol.getProtocolNumber().contains("R")
|| protocol.getProtocolNumber().contains("C"));
}
