@Override
public boolean isAuthorized(String username, IacucProtocolTask task) {
ProtocolBase protocol = task.getProtocol();
return !(kraWorkflowService.isInWorkflow(protocol.getProtocolDocument())
&& kraWorkflowService.isCurrentNode(
protocol.getProtocolDocument(), Constants.PROTOCOL_IACUCREVIEW_ROUTE_NODE_NAME)
&& canExecuteAction(protocol, IacucProtocolActionType.ASSIGNED_TO_AGENDA)
&& isAssignedToCommittee(protocol))
&& hasPermission(username, protocol, PermissionConstants.PERFORM_IACUC_ACTIONS_ON_PROTO);
}
protected void performDisapprove(ProtocolBase protocol) throws Exception {
if (protocol.getProtocolDocument() != null) {
WorkflowDocument currentWorkflowDocument =
protocol.getProtocolDocument().getDocumentHeader().getWorkflowDocument();
if (currentWorkflowDocument != null) {
currentWorkflowDocument.disapprove(
"Protocol document disapproved after committee decision");
}
}
getProtocolOnlineReviewService()
.cancelOnlineReviews(
protocol.getProtocolSubmission(),
"Protocol Review cancelled - protocol has been disapproved.");
}
protected ProtocolDocument getReturnedVersionedDocument(ProtocolBase protocol) throws Exception {
getDocumentService()
.cancelDocument(
protocol.getProtocolDocument(),
"Protocol document cancelled - protocol has been returned for revisions.");
getProtocolOnlineReviewService()
.finalizeOnlineReviews(
protocol.getProtocolSubmission(),
"Protocol Review finalized - protocol has been returned for revisions.");
return (ProtocolDocument) getVersionedDocument(protocol);
}
@Override
public boolean isProtocolInStateToBeReviewed(ProtocolBase protocol) {
boolean isReviewable = false;
ProtocolSubmission submission =
(ProtocolSubmission) ((Protocol) protocol).getProtocolSubmission();
if (submission != null) {
try {
isReviewable =
StringUtils.isNotEmpty(submission.getScheduleId())
|| ProtocolReviewType.EXPEDITED_REVIEW_TYPE_CODE.equals(
submission.getProtocolReviewTypeCode())
|| (ProtocolReviewType.FYI_TYPE_CODE.equalsIgnoreCase(
submission.getProtocolReviewTypeCode())
&& ProtocolSubmissionType.NOTIFY_IRB.equalsIgnoreCase(
submission.getProtocolSubmissionType().getSubmissionTypeCode()));
isReviewable &=
(StringUtils.equals(
submission.getSubmissionStatusCode(),
ProtocolSubmissionStatus.SUBMITTED_TO_COMMITTEE)
|| StringUtils.equals(
submission.getSubmissionStatusCode(), ProtocolSubmissionStatus.IN_AGENDA));
ProtocolDocument protocolDocument =
(ProtocolDocument)
protocol
.getProtocolDocument(); // (ProtocolDocument)
// documentService.getByDocumentHeaderId(protocol.getProtocolDocument().getDocumentNumber());
isReviewable &=
getKraWorkflowService()
.isCurrentNode(protocolDocument, Constants.PROTOCOL_IRBREVIEW_ROUTE_NODE_NAME);
} catch (Exception e) {
String errorString =
String.format(
"WorkflowException checking route node for creating new ProtocolOnlineReviewDocument "
+ "for protocol %s",
submission.getProtocolNumber());
LOG.error(errorString, e);
throw new RuntimeException(errorString, e);
}
}
return isReviewable;
}
public boolean isProtocolInStateToBeReviewed(ProtocolBase protocol) {
boolean isReviewable = false;
ProtocolSubmissionBase submission =
(IacucProtocolSubmission) ((IacucProtocol) protocol).getProtocolSubmission();
if (submission != null) {
try {
isReviewable =
StringUtils.isNotEmpty(submission.getScheduleId())
|| StringUtils.equals(
submission.getProtocolSubmissionType().getSubmissionTypeCode(),
IacucProtocolSubmissionType.NOTIFY_IACUC);
isReviewable &=
(StringUtils.equals(
submission.getSubmissionStatusCode(),
IacucProtocolSubmissionStatus.SUBMITTED_TO_COMMITTEE)
|| StringUtils.equals(
submission.getSubmissionStatusCode(), IacucProtocolSubmissionStatus.IN_AGENDA));
ProtocolDocumentBase protocolDocument =
(ProtocolDocumentBase)
documentService.getByDocumentHeaderId(
protocol.getProtocolDocument().getDocumentNumber());
isReviewable &=
kraWorkflowService.isCurrentNode(
protocolDocument, Constants.IACUC_PROTOCOL_IACUCREVIEW_ROUTE_NODE_NAME);
} catch (WorkflowException e) {
String errorString =
String.format(
"WorkflowException checking route node for creating new ProtocolOnlineReviewDocumentBase "
+ "for protocol %s",
submission.getProtocolNumber());
LOG.error(errorString, e);
throw new RuntimeException(errorString, e);
}
}
return isReviewable;
}
/**
* Can the user on the current thread execute the given action for the given protocol?
*
* @param protocol
* @param protocolActionTypeCode
* @return true if the action can be executed; otherwise false
*/
protected final boolean canExecuteAction(ProtocolBase protocol, String protocolActionTypeCode) {
return protocol.isActive()
&& !protocol.getProtocolDocument().isViewOnly()
&& protocolActionService.isActionAllowed(protocolActionTypeCode, protocol);
}
