/** Created by dsotnikov on 2/25/2014. */
public class IncludeDstu2Test {

  private static CloseableHttpClient ourClient;
  private static final org.slf4j.Logger ourLog =
      org.slf4j.LoggerFactory.getLogger(IncludeDstu2Test.class);
  private static int ourPort;
  private static Server ourServer;
  private static FhirContext ourCtx;

  @Test
  public void testNoIncludes() throws Exception {
    HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
    assertEquals(1, bundle.size());

    Patient p = bundle.getResources(Patient.class).get(0);
    assertEquals(0, p.getName().size());
    assertEquals("Hello", p.getId().getIdPart());
  }

  @Test
  public void testOneIncludeXml() throws Exception {
    HttpGet httpGet =
        new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());

    ourLog.info(responseContent);

    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
    assertEquals(1, bundle.size());

    Patient p = bundle.getResources(Patient.class).get(0);
    assertEquals(1, p.getName().size());
    assertEquals("Hello", p.getId().getIdPart());
    assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
  }

  @Test
  public void testOneIncludeJson() throws Exception {
    HttpGet httpGet =
        new HttpGet(
            "http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_format=json");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());

    ourLog.info(responseContent);

    Bundle bundle = ourCtx.newJsonParser().parseBundle(responseContent);
    assertEquals(1, bundle.size());

    Patient p = bundle.getResources(Patient.class).get(0);
    assertEquals(1, p.getName().size());
    assertEquals("Hello", p.getId().getIdPart());
    assertEquals("foo", p.getName().get(0).getFamilyFirstRep().getValue());
  }

  // @Test
  public void testMixedContainedAndNonContained() throws Exception {
    HttpGet httpGet =
        new HttpGet(
            "http://localhost:"
                + ourPort
                + "/DiagnosticReport?_query=stitchedInclude&_pretty=true");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    ourLog.info(responseContent);

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
    assertEquals(4, bundle.size());
  }

  @Test
  public void testIIncludedResourcesNonContained() throws Exception {
    HttpGet httpGet =
        new HttpGet("http://localhost:" + ourPort + "/Patient?_query=normalInclude&_pretty=true");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);

    ourLog.info(responseContent);

    assertEquals(3, bundle.size());
    assertEquals(
        new IdDt("Patient/p1"),
        bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Patient/p2"),
        bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Organization/o1"),
        bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
    assertEquals(
        BundleEntrySearchModeEnum.INCLUDE,
        bundle.getEntries().get(2).getSearchMode().getValueAsEnum());

    Patient p1 = (Patient) bundle.toListOfResources().get(0);
    assertEquals(0, p1.getContained().getContainedResources().size());

    Patient p2 = (Patient) bundle.toListOfResources().get(1);
    assertEquals(0, p2.getContained().getContainedResources().size());
  }

  @Test
  public void testIIncludedResourcesNonContainedInExtension() throws Exception {
    HttpGet httpGet =
        new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);

    ourLog.info(responseContent);

    assertEquals(3, bundle.size());
    assertEquals(
        new IdDt("Patient/p1"),
        bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Patient/p2"),
        bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Organization/o1"),
        bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
    assertEquals(
        BundleEntrySearchModeEnum.INCLUDE,
        bundle.getEntries().get(2).getSearchMode().getValueAsEnum());

    Patient p1 = (Patient) bundle.toListOfResources().get(0);
    assertEquals(0, p1.getContained().getContainedResources().size());

    Patient p2 = (Patient) bundle.toListOfResources().get(1);
    assertEquals(0, p2.getContained().getContainedResources().size());
  }

  @Test
  public void testIIncludedResourcesNonContainedInExtensionJson() throws Exception {
    HttpGet httpGet =
        new HttpGet(
            "http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true&_format=json");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newJsonParser().parseBundle(responseContent);

    ourLog.info(responseContent);

    assertEquals(3, bundle.size());
    assertEquals(
        new IdDt("Patient/p1"),
        bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Patient/p2"),
        bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Organization/o1"),
        bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
    assertEquals(
        BundleEntrySearchModeEnum.INCLUDE,
        bundle.getEntries().get(2).getSearchMode().getValueAsEnum());

    Patient p1 = (Patient) bundle.toListOfResources().get(0);
    assertEquals(0, p1.getContained().getContainedResources().size());

    Patient p2 = (Patient) bundle.toListOfResources().get(1);
    assertEquals(0, p2.getContained().getContainedResources().size());
  }

  @Test
  public void testIIncludedResourcesNonContainedInDeclaredExtension() throws Exception {
    HttpGet httpGet =
        new HttpGet(
            "http://localhost:" + ourPort + "/Patient?_query=declaredExtInclude&_pretty=true");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);

    ourLog.info(responseContent);

    assertEquals(4, bundle.size());
    assertEquals(
        new IdDt("Patient/p1"),
        bundle.toListOfResources().get(0).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Patient/p2"),
        bundle.toListOfResources().get(1).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Organization/o1"),
        bundle.toListOfResources().get(2).getId().toUnqualifiedVersionless());
    assertEquals(
        new IdDt("Organization/o2"),
        bundle.toListOfResources().get(3).getId().toUnqualifiedVersionless());
    assertEquals(
        BundleEntrySearchModeEnum.INCLUDE,
        bundle.getEntries().get(2).getSearchMode().getValueAsEnum());
    assertEquals(
        BundleEntrySearchModeEnum.INCLUDE,
        bundle.getEntries().get(3).getSearchMode().getValueAsEnum());

    Patient p1 = (Patient) bundle.toListOfResources().get(0);
    assertEquals(0, p1.getContained().getContainedResources().size());

    Patient p2 = (Patient) bundle.toListOfResources().get(1);
    assertEquals(0, p2.getContained().getContainedResources().size());
  }

  @Test
  public void testTwoInclude() throws Exception {
    HttpGet httpGet =
        new HttpGet(
            "http://localhost:"
                + ourPort
                + "/Patient?name=Hello&_include=foo&_include=bar&_pretty=true");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());

    ourLog.info(responseContent);

    assertEquals(200, status.getStatusLine().getStatusCode());
    Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
    assertEquals(1, bundle.size());

    Patient p = bundle.getResources(Patient.class).get(0);
    assertEquals(2, p.getName().size());
    assertEquals("Hello", p.getId().getIdPart());

    Set<String> values = new HashSet<String>();
    values.add(p.getName().get(0).getFamilyFirstRep().getValue());
    values.add(p.getName().get(1).getFamilyFirstRep().getValue());
    assertThat(values, containsInAnyOrder("foo", "bar"));
  }

  @Test
  public void testBadInclude() throws Exception {
    HttpGet httpGet =
        new HttpGet(
            "http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=baz");
    HttpResponse status = ourClient.execute(httpGet);
    assertEquals(400, status.getStatusLine().getStatusCode());
  }

  @AfterClass
  public static void afterClass() throws Exception {
    ourServer.stop();
  }

  @BeforeClass
  public static void beforeClass() throws Exception {

    ourCtx = FhirContext.forDstu2();
    ourPort = PortUtil.findFreePort();
    ourServer = new Server(ourPort);

    DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider();

    ServletHandler proxyHandler = new ServletHandler();
    RestfulServer servlet = new RestfulServer(ourCtx);
    servlet.setResourceProviders(patientProvider, new DummyDiagnosticReportResourceProvider());
    servlet.setBundleInclusionRule(BundleInclusionRule.BASED_ON_RESOURCE_PRESENCE);
    ServletHolder servletHolder = new ServletHolder(servlet);
    proxyHandler.addServletWithMapping(servletHolder, "/*");
    ourServer.setHandler(proxyHandler);
    ourServer.start();

    PoolingHttpClientConnectionManager connectionManager =
        new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
    HttpClientBuilder builder = HttpClientBuilder.create();
    builder.setConnectionManager(connectionManager);
    ourClient = builder.build();
  }

  @ResourceDef(name = "Patient")
  public static class ExtPatient extends Patient {
    @Child(name = "secondOrg")
    @Extension(url = "http://foo#secondOrg", definedLocally = false, isModifier = false)
    private ResourceReferenceDt mySecondOrg;

    @Override
    public boolean isEmpty() {
      return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg);
    }

    public ResourceReferenceDt getSecondOrg() {
      if (mySecondOrg == null) {
        mySecondOrg = new ResourceReferenceDt();
      }
      return mySecondOrg;
    }

    public void setSecondOrg(ResourceReferenceDt theSecondOrg) {
      mySecondOrg = theSecondOrg;
    }
  }

  /** Created by dsotnikov on 2/25/2014. */
  public static class DummyDiagnosticReportResourceProvider implements IResourceProvider {

    @Override
    public Class<? extends IResource> getResourceType() {
      return DiagnosticReport.class;
    }

    @Search(queryName = "stitchedInclude")
    public List<DiagnosticReport> stitchedInclude() {
      Practitioner pr1 = new Practitioner();
      pr1.setId("Practitioner/001");
      pr1.getName().addFamily("Pract1");

      Practitioner pr2 = new Practitioner();
      pr2.setId("Practitioner/002");
      pr2.getName().addFamily("Pract2");

      Practitioner pr3 = new Practitioner();
      pr3.setId("Practitioner/003");
      pr3.getName().addFamily("Pract3");

      Observation o1 = new Observation();
      o1.getCode().setText("Obs1");
      o1.addPerformer().setResource(pr1);

      Observation o2 = new Observation();
      o2.getCode().setText("Obs2");
      o2.addPerformer().setResource(pr2);

      Observation o3 = new Observation();
      o3.getCode().setText("Obs3");
      o3.addPerformer().setResource(pr3);

      DiagnosticReport rep = new DiagnosticReport();
      rep.setId("DiagnosticReport/999");
      rep.getName().setText("Rep");
      rep.addResult().setResource(o1);
      rep.addResult().setResource(o2);
      rep.addResult().setResource(o3);

      return Collections.singletonList(rep);
    }
  }

  /** Created by dsotnikov on 2/25/2014. */
  public static class DummyPatientResourceProvider implements IResourceProvider {

    @Search(queryName = "normalInclude")
    public List<Patient> normalInclude() {
      Organization o1 = new Organization();
      o1.getNameElement().setValue("o1");
      o1.setId("o1");

      Patient p1 = new Patient();
      p1.setId("p1");
      p1.addIdentifier().setValue("p1");
      p1.getManagingOrganization().setResource(o1);

      Patient p2 = new Patient();
      p2.setId("p2");
      p2.addIdentifier().setValue("p2");
      p2.getManagingOrganization().setResource(o1);

      return Arrays.asList(p1, p2);
    }

    @Search(queryName = "extInclude")
    public List<Patient> extInclude() {
      Organization o1 = new Organization();
      o1.getNameElement().setValue("o1");
      o1.setId("o1");

      Patient p1 = new Patient();
      p1.setId("p1");
      p1.addIdentifier().setValue("p1");
      p1.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));

      Patient p2 = new Patient();
      p2.setId("p2");
      p2.addIdentifier().setValue("p2");
      p2.addUndeclaredExtension(false, "http://foo", new ResourceReferenceDt(o1));

      return Arrays.asList(p1, p2);
    }

    @Search(queryName = "declaredExtInclude")
    public List<ExtPatient> declaredExtInclude() {
      Organization o1 = new Organization();
      o1.getNameElement().setValue("o1");
      o1.setId("o1");

      Organization o2 = new Organization();
      o2.getNameElement().setValue("o2");
      o2.setId("o2");
      o1.getPartOf().setResource(o2);

      ExtPatient p1 = new ExtPatient();
      p1.setId("p1");
      p1.addIdentifier().setValue("p1");
      p1.getSecondOrg().setResource(o1);

      ExtPatient p2 = new ExtPatient();
      p2.setId("p2");
      p2.addIdentifier().setValue("p2");
      p2.getSecondOrg().setResource(o1);

      return Arrays.asList(p1, p2);
    }

    @Search(queryName = "containedInclude")
    public List<Patient> containedInclude() {
      Organization o1 = new Organization();
      o1.getNameElement().setValue("o1");

      Patient p1 = new Patient();
      p1.setId("p1");
      p1.addIdentifier().setValue("p1");
      p1.getManagingOrganization().setResource(o1);

      Patient p2 = new Patient();
      p2.setId("p2");
      p2.addIdentifier().setValue("p2");
      p2.getManagingOrganization().setResource(o1);

      return Arrays.asList(p1, p2);
    }

    @Search
    public List<Patient> findPatient(
        @RequiredParam(name = Patient.SP_NAME) StringDt theName,
        @IncludeParam(allow = {"foo", "bar"}) Set<Include> theIncludes) {
      ArrayList<Patient> retVal = new ArrayList<Patient>();

      Patient p = new Patient();
      p.addIdentifier().setSystem("foo").setValue("bar");

      p.setId(theName.getValue());

      if (theIncludes != null) {
        for (Include next : theIncludes) {
          p.addName().addFamily().setValue(next.getValue());
        }
      }
      retVal.add(p);

      return retVal;
    }

    @Override
    public Class<? extends IResource> getResourceType() {
      return Patient.class;
    }
  }
}
Esempio n. 2
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public class ElementsParamTest {

  private static CloseableHttpClient ourClient;
  private static FhirContext ourCtx = FhirContext.forDstu2();
  private static Set<String> ourLastElements;
  private static final org.slf4j.Logger ourLog =
      org.slf4j.LoggerFactory.getLogger(ElementsParamTest.class);
  private static int ourPort;
  private static Server ourServer;

  @Before
  public void before() {
    ourLastElements = null;
  }

  @Test
  public void testReadSummaryData() throws Exception {
    HttpGet httpGet =
        new HttpGet("http://localhost:" + ourPort + "/Patient/1?_elements=name,maritalStatus");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());
    ourLog.info(responseContent);

    assertEquals(200, status.getStatusLine().getStatusCode());
    assertEquals(
        Constants.CT_FHIR_XML + Constants.CHARSET_UTF8_CTSUFFIX.replace(" ", "").toLowerCase(),
        status.getEntity().getContentType().getValue().replace(" ", "").replace("UTF", "utf"));
    assertThat(responseContent, not(containsString("<Bundle")));
    assertThat(responseContent, (containsString("<Patien")));
    assertThat(responseContent, not(containsString("<div>THE DIV</div>")));
    assertThat(responseContent, (containsString("family")));
    assertThat(responseContent, (containsString("maritalStatus")));
    assertThat(ourLastElements, containsInAnyOrder("name", "maritalStatus"));
  }

  @Test
  public void testReadSummaryTrue() throws Exception {
    HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient/1?_elements=name");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());
    ourLog.info(responseContent);

    assertEquals(200, status.getStatusLine().getStatusCode());
    assertEquals(
        Constants.CT_FHIR_XML + Constants.CHARSET_UTF8_CTSUFFIX.replace(" ", "").toLowerCase(),
        status.getEntity().getContentType().getValue().replace(" ", "").replace("UTF", "utf"));
    assertThat(responseContent, not(containsString("<Bundle")));
    assertThat(responseContent, (containsString("<Patien")));
    assertThat(responseContent, not(containsString("<div>THE DIV</div>")));
    assertThat(responseContent, (containsString("family")));
    assertThat(responseContent, not(containsString("maritalStatus")));
    assertThat(ourLastElements, containsInAnyOrder("name"));
  }

  @Test
  public void testSearchSummaryData() throws Exception {
    HttpGet httpGet =
        new HttpGet("http://localhost:" + ourPort + "/Patient?_elements=name,maritalStatus");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());
    ourLog.info(responseContent);

    assertEquals(200, status.getStatusLine().getStatusCode());
    assertThat(responseContent, containsString("<Patient"));
    assertThat(responseContent, not(containsString("THE DIV")));
    assertThat(responseContent, containsString("family"));
    assertThat(responseContent, containsString("maritalStatus"));
    assertThat(ourLastElements, containsInAnyOrder("name", "maritalStatus"));
  }

  @Test
  public void testSearchSummaryText() throws Exception {
    HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_elements=text");
    HttpResponse status = ourClient.execute(httpGet);
    String responseContent = IOUtils.toString(status.getEntity().getContent());
    IOUtils.closeQuietly(status.getEntity().getContent());
    ourLog.info(responseContent);

    assertEquals(200, status.getStatusLine().getStatusCode());
    assertThat(responseContent, (containsString("<total value=\"1\"/>")));
    assertThat(responseContent, (containsString("entry")));
    assertThat(responseContent, (containsString("THE DIV")));
    assertThat(responseContent, not(containsString("family")));
    assertThat(responseContent, not(containsString("maritalStatus")));
    assertThat(ourLastElements, containsInAnyOrder("text"));
  }

  @AfterClass
  public static void afterClassClearContext() throws Exception {
    ourServer.stop();
    TestUtil.clearAllStaticFieldsForUnitTest();
  }

  @BeforeClass
  public static void beforeClass() throws Exception {
    ourPort = PortUtil.findFreePort();
    ourServer = new Server(ourPort);

    DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider();

    ServletHandler proxyHandler = new ServletHandler();
    RestfulServer servlet = new RestfulServer(ourCtx);

    servlet.setResourceProviders(patientProvider);
    ServletHolder servletHolder = new ServletHolder(servlet);
    proxyHandler.addServletWithMapping(servletHolder, "/*");
    ourServer.setHandler(proxyHandler);
    ourServer.start();

    PoolingHttpClientConnectionManager connectionManager =
        new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS);
    HttpClientBuilder builder = HttpClientBuilder.create();
    builder.setConnectionManager(connectionManager);
    ourClient = builder.build();
  }

  public static class DummyPatientResourceProvider implements IResourceProvider {

    @Override
    public Class<? extends IResource> getResourceType() {
      return Patient.class;
    }

    @Read
    public Patient read(@IdParam IdDt theId, @Elements Set<String> theElements) {
      ourLastElements = theElements;
      Patient patient = new Patient();
      patient.setId("Patient/1/_history/1");
      patient.getText().setDiv("<div>THE DIV</div>");
      patient.addName().addFamily("FAMILY");
      patient.setMaritalStatus(MaritalStatusCodesEnum.D);
      return patient;
    }

    @Search()
    public Patient search(@Elements Set<String> theElements) {
      ourLastElements = theElements;
      Patient patient = new Patient();
      patient.setId("Patient/1/_history/1");
      patient.getText().setDiv("<div>THE DIV</div>");
      patient.addName().addFamily("FAMILY");
      patient.setMaritalStatus(MaritalStatusCodesEnum.D);
      return patient;
    }
  }
}